Wall clock time and date at job start Tue Mar 31 2020 11:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81402 * 102.99848 * 2 1 4 4 H 1.08996 * 109.47297 * 55.00136 * 3 2 1 5 5 C 1.53004 * 109.47072 * 294.99648 * 3 2 1 6 6 C 1.50701 * 109.47017 * 175.00147 * 3 2 1 7 7 O 1.21281 * 120.00324 * 36.11537 * 6 3 2 8 8 N 1.34780 * 119.99815 * 216.11422 * 6 3 2 9 9 C 1.46497 * 119.99933 * 184.23173 * 8 6 3 10 10 C 1.53007 * 109.47212 * 178.36007 * 9 8 6 11 11 H 1.09000 * 109.70107 * 61.33691 * 10 9 8 12 12 C 1.53618 * 109.66461 * 181.93378 * 10 9 8 13 13 C 1.53046 * 109.24191 * 174.54808 * 12 10 9 14 14 C 1.53043 * 109.53652 * 298.50907 * 13 12 10 15 15 C 1.53000 * 109.49672 * 301.41415 * 14 13 12 16 16 C 1.52999 * 109.49602 * 181.31253 * 14 13 12 17 17 C 1.53192 * 109.31055 * 61.36355 * 14 13 12 18 18 N 1.46927 * 108.78117 * 305.36610 * 17 14 13 19 19 C 1.36935 * 120.63129 * 233.59094 * 18 17 14 20 20 H 1.08000 * 120.00319 * 140.62049 * 19 18 17 21 21 C 1.38815 * 119.99640 * 320.61588 * 19 18 17 22 22 N 1.31616 * 120.00166 * 344.93862 * 21 19 18 23 23 Si 1.86803 * 119.99699 * 164.66453 * 21 19 18 24 24 H 1.48491 * 109.47207 * 270.91466 * 23 21 19 25 25 H 1.48504 * 109.46853 * 30.91371 * 23 21 19 26 26 H 1.48502 * 109.46944 * 150.90952 * 23 21 19 27 27 H 1.08999 * 109.47519 * 60.00313 * 1 2 3 28 28 H 1.09007 * 109.47146 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47174 * 300.00004 * 1 2 3 30 30 H 1.09003 * 109.46552 * 63.94599 * 5 3 2 31 31 H 1.09000 * 109.47079 * 183.94069 * 5 3 2 32 32 H 1.08997 * 109.47092 * 303.94468 * 5 3 2 33 33 H 0.96994 * 120.00196 * 4.23623 * 8 6 3 34 34 H 1.09001 * 109.47466 * 58.36096 * 9 8 6 35 35 H 1.09005 * 109.47403 * 298.35424 * 9 8 6 36 36 H 1.09000 * 109.63823 * 54.55501 * 12 10 9 37 37 H 1.09005 * 109.46117 * 294.43281 * 12 10 9 38 38 H 1.08997 * 109.45939 * 178.49235 * 13 12 10 39 39 H 1.08996 * 109.46105 * 58.53133 * 13 12 10 40 40 H 1.09004 * 109.46726 * 179.83593 * 15 14 13 41 41 H 1.08993 * 109.47181 * 299.83253 * 15 14 13 42 42 H 1.09003 * 109.47096 * 59.84187 * 15 14 13 43 43 H 1.08997 * 109.47426 * 300.16334 * 16 14 13 44 44 H 1.08998 * 109.46797 * 60.16743 * 16 14 13 45 45 H 1.09004 * 109.47037 * 180.16170 * 16 14 13 46 46 H 1.09005 * 109.58813 * 185.57325 * 17 14 13 47 47 H 1.09006 * 109.70244 * 65.22172 * 17 14 13 48 48 H 0.96998 * 119.99588 * 354.14594 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2219 1.7675 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7427 2.4016 -1.3074 6 6 3.7141 1.9386 0.1238 7 8 4.4617 1.1525 -0.4184 8 7 4.2178 2.9653 0.8371 9 6 5.6653 3.1860 0.8813 10 6 5.9663 4.4301 1.7196 11 1 5.6123 4.2803 2.7396 12 6 7.4796 4.6935 1.7289 13 6 7.7576 6.0124 2.4539 14 6 7.0738 7.1605 1.7078 15 6 7.5943 7.2171 0.2702 16 6 7.3792 8.4825 2.4148 17 6 5.5600 6.9256 1.6946 18 7 5.2926 5.5955 1.1306 19 6 4.4279 5.4442 0.0797 20 1 4.6541 4.7421 -0.7091 21 6 3.2603 6.1933 0.0283 22 7 2.8319 6.8190 1.1041 23 14 2.3013 6.3196 -1.5697 24 1 2.8044 7.4723 -2.3591 25 1 2.4764 5.0697 -2.3522 26 1 0.8607 6.5171 -1.2682 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.6559 2.3399 -1.3640 31 1 2.0494 3.4471 -1.3380 32 1 2.1813 1.8694 -2.1515 33 1 3.6219 3.5579 1.3213 34 1 6.0420 3.3304 -0.1314 35 1 6.1516 2.3195 1.3297 36 1 7.8467 4.7571 0.7045 37 1 7.9868 3.8796 2.2471 38 1 8.8326 6.1896 2.4860 39 1 7.3683 5.9571 3.4704 40 1 7.1048 8.0331 -0.2615 41 1 8.6713 7.3843 0.2801 42 1 7.3774 6.2744 -0.2321 43 1 7.0093 8.4407 3.4392 44 1 8.4563 8.6492 2.4239 45 1 6.8896 9.2996 1.8848 46 1 5.0775 7.6864 1.0810 47 1 5.1714 6.9760 2.7118 48 1 3.2833 6.6889 1.9528 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098922693.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:05 Heat of formation + Delta-G solvation = -33.330888 kcal Electronic energy + Delta-G solvation = -26368.933073 eV Core-core repulsion = 22971.042109 eV Total energy + Delta-G solvation = -3397.890964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.44043 -38.53835 -35.18222 -33.46214 -33.05212 -31.94181 -29.87065 -28.79759 -27.53775 -26.75528 -25.49957 -24.63071 -22.90650 -22.20104 -20.31333 -19.82101 -17.96346 -17.45679 -16.51006 -16.29704 -15.48994 -14.97820 -14.52416 -14.39806 -14.21849 -14.05339 -13.74947 -13.49526 -13.48072 -13.42211 -13.14176 -12.79041 -12.56548 -12.15879 -12.13010 -11.90688 -11.76309 -11.55781 -11.49852 -11.41299 -11.29815 -10.81503 -10.79228 -10.70559 -10.32331 -10.17377 -10.02787 -9.92899 -9.66484 -9.64956 -9.34471 -9.10364 -8.60519 -8.22654 -7.53496 -6.88689 -6.06713 -3.49374 1.63416 2.62570 3.21321 3.33946 3.38935 3.52559 3.85467 4.41535 5.00095 5.07621 5.09756 5.15094 5.16797 5.21010 5.31880 5.37224 5.41340 5.48188 5.63026 5.64908 5.76096 5.83723 5.89488 5.97752 6.00286 6.05814 6.11661 6.20118 6.24286 6.33829 6.34751 6.36397 6.37777 6.40909 6.52750 6.70249 6.79811 6.83873 6.89893 7.11415 7.12383 7.17795 8.03839 8.20415 8.50115 8.81515 8.99097 9.70014 10.20602 11.11398 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.016083 B = 0.004872 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.599905 B = 5746.202407 C = 6880.483927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.209 6.209 3 C -0.080 4.080 4 H 0.102 0.898 5 C -0.147 4.147 6 C 0.530 3.470 7 O -0.548 6.548 8 N -0.681 5.681 9 C 0.141 3.859 10 C 0.161 3.839 11 H 0.030 0.970 12 C -0.130 4.130 13 C -0.096 4.096 14 C -0.089 4.089 15 C -0.125 4.125 16 C -0.136 4.136 17 C 0.169 3.831 18 N -0.592 5.592 19 C -0.337 4.337 20 H 0.055 0.945 21 C -0.015 4.015 22 N -0.918 5.918 23 Si 1.053 2.947 24 H -0.293 1.293 25 H -0.284 1.284 26 H -0.288 1.288 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.413 0.587 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.045 0.955 41 H 0.033 0.967 42 H 0.066 0.934 43 H 0.048 0.952 44 H 0.044 0.956 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.016 0.984 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 -4.376 1.518 4.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.016 5.984 3 C -0.212 4.212 4 H 0.120 0.880 5 C -0.206 4.206 6 C 0.313 3.687 7 O -0.427 6.427 8 N -0.332 5.332 9 C 0.017 3.983 10 C 0.054 3.946 11 H 0.048 0.952 12 C -0.169 4.169 13 C -0.133 4.133 14 C -0.090 4.090 15 C -0.182 4.182 16 C -0.194 4.194 17 C 0.043 3.957 18 N -0.317 5.317 19 C -0.467 4.467 20 H 0.072 0.928 21 C -0.219 4.219 22 N -0.557 5.557 23 Si 0.883 3.117 24 H -0.220 1.220 25 H -0.210 1.210 26 H -0.214 1.214 27 H 0.096 0.904 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.251 0.749 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.034 0.966 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.712 -5.078 0.397 5.143 hybrid contribution 0.167 0.844 0.962 1.291 sum 0.879 -4.234 1.360 4.533 Atomic orbital electron populations 1.23483 0.95736 1.06163 1.05004 1.87103 1.05011 1.08361 1.97917 1.23253 0.98205 0.96185 1.03520 0.88001 1.22106 1.01021 1.02766 0.94712 1.19454 0.88275 0.81520 0.79458 1.90664 1.60020 1.44098 1.47916 1.45852 1.08722 1.29061 1.49552 1.21212 0.80464 0.95960 1.00697 1.20854 0.91477 0.87659 0.94617 0.95234 1.22069 0.97407 0.96620 1.00843 1.21407 0.98701 0.94796 0.98425 1.21117 0.99211 0.93572 0.95142 1.21702 0.97990 1.02504 0.96008 1.21791 1.00142 0.97458 0.99986 1.20982 0.89928 0.88438 0.96354 1.44077 1.50647 0.99349 1.37581 1.19879 0.99724 1.27407 0.99674 0.92786 1.25860 0.94583 0.98092 1.03350 1.70748 1.41407 1.43679 0.99890 0.83745 0.76449 0.76195 0.75269 1.22036 1.21048 1.21393 0.90386 0.88188 0.90614 0.91880 0.89828 0.90850 0.74925 0.91679 0.92795 0.91547 0.93034 0.93386 0.92938 0.93571 0.94797 0.91485 0.93296 0.93659 0.92983 0.91089 0.96580 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 10.46 101.05 1.06 -0.40 16 2 S -0.21 -3.23 21.27 -107.50 -2.29 -5.51 16 3 C -0.08 -1.32 3.18 -27.88 -0.09 -1.41 16 4 H 0.10 1.56 8.08 -51.93 -0.42 1.14 16 5 C -0.15 -2.36 9.03 37.16 0.34 -2.03 16 6 C 0.53 10.33 6.82 -10.98 -0.07 10.25 16 7 O -0.55 -12.23 16.40 5.56 0.09 -12.14 16 8 N -0.68 -13.08 3.89 -60.29 -0.23 -13.31 16 9 C 0.14 2.65 4.47 -4.04 -0.02 2.63 16 10 C 0.16 2.97 3.04 -67.37 -0.20 2.76 16 11 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 12 C -0.13 -2.10 5.05 -26.39 -0.13 -2.23 16 13 C -0.10 -1.49 4.71 -26.68 -0.13 -1.62 16 14 C -0.09 -1.51 0.77 -154.39 -0.12 -1.62 16 15 C -0.12 -2.14 7.99 37.16 0.30 -1.85 16 16 C -0.14 -2.03 8.48 37.16 0.32 -1.72 16 17 C 0.17 3.48 3.34 -3.71 -0.01 3.47 16 18 N -0.59 -12.50 2.15 -164.51 -0.35 -12.86 16 19 C -0.34 -7.89 6.47 -15.06 -0.10 -7.99 16 20 H 0.05 1.35 6.36 -52.49 -0.33 1.02 16 21 C -0.02 -0.38 4.91 -17.43 -0.09 -0.46 16 22 N -0.92 -24.29 12.74 55.49 0.71 -23.58 16 23 Si 1.05 23.10 28.68 -169.99 -4.88 18.22 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -5.84 5.98 56.52 0.34 -5.50 16 26 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 27 H 0.08 0.78 7.26 -51.92 -0.38 0.41 16 28 H 0.10 0.91 8.14 -51.92 -0.42 0.48 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.84 7.10 -51.93 -0.37 0.47 16 31 H 0.08 1.51 5.46 -51.93 -0.28 1.23 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.41 8.21 7.32 -40.82 -0.30 7.91 16 34 H 0.06 1.34 7.48 -51.93 -0.39 0.96 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.12 6.33 -51.93 -0.33 0.79 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 1.27 5.97 -51.93 -0.31 0.96 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.07 1.69 6.88 -51.93 -0.36 1.33 16 47 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 48 H 0.27 7.21 6.36 -40.82 -0.26 6.95 16 LS Contribution 372.17 15.07 5.61 5.61 Total: -1.00 -26.98 372.17 -8.78 -35.76 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -8.48 Total: 10.02 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 1.04 Total: -2.20 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.12 Total: -49.75 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.88 Total: 18.22 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -2.29 Total: -5.51 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -26.98 -8.78 -35.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098922693.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.424 kcal (2) G-P(sol) polarization free energy of solvation -26.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds