Wall clock time and date at job start Tue Mar 31 2020 11:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81402 * 102.99848 * 2 1 4 4 H 1.08996 * 109.47297 * 55.00136 * 3 2 1 5 5 C 1.53004 * 109.47072 * 294.99648 * 3 2 1 6 6 C 1.50701 * 109.47017 * 175.00147 * 3 2 1 7 7 O 1.21281 * 120.00324 * 36.11537 * 6 3 2 8 8 N 1.34780 * 119.99815 * 216.11422 * 6 3 2 9 9 C 1.46497 * 119.99933 * 184.23173 * 8 6 3 10 10 C 1.53007 * 109.47212 * 178.36007 * 9 8 6 11 11 H 1.09000 * 109.70107 * 61.33691 * 10 9 8 12 12 C 1.53618 * 109.66461 * 181.93378 * 10 9 8 13 13 C 1.53046 * 109.24191 * 174.54808 * 12 10 9 14 14 C 1.53043 * 109.53652 * 298.50907 * 13 12 10 15 15 C 1.53000 * 109.49672 * 301.41415 * 14 13 12 16 16 C 1.52999 * 109.49602 * 181.31253 * 14 13 12 17 17 C 1.53192 * 109.31055 * 61.36355 * 14 13 12 18 18 N 1.46927 * 108.78117 * 305.36610 * 17 14 13 19 19 C 1.36935 * 120.63129 * 233.59094 * 18 17 14 20 20 H 1.08000 * 120.00319 * 140.62049 * 19 18 17 21 21 C 1.38815 * 119.99640 * 320.61588 * 19 18 17 22 22 N 1.31616 * 120.00166 * 344.93862 * 21 19 18 23 23 Si 1.86803 * 119.99699 * 164.66453 * 21 19 18 24 24 H 1.48491 * 109.47207 * 270.91466 * 23 21 19 25 25 H 1.48504 * 109.46853 * 30.91371 * 23 21 19 26 26 H 1.48502 * 109.46944 * 150.90952 * 23 21 19 27 27 H 1.08999 * 109.47519 * 60.00313 * 1 2 3 28 28 H 1.09007 * 109.47146 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47174 * 300.00004 * 1 2 3 30 30 H 1.09003 * 109.46552 * 63.94599 * 5 3 2 31 31 H 1.09000 * 109.47079 * 183.94069 * 5 3 2 32 32 H 1.08997 * 109.47092 * 303.94468 * 5 3 2 33 33 H 0.96994 * 120.00196 * 4.23623 * 8 6 3 34 34 H 1.09001 * 109.47466 * 58.36096 * 9 8 6 35 35 H 1.09005 * 109.47403 * 298.35424 * 9 8 6 36 36 H 1.09000 * 109.63823 * 54.55501 * 12 10 9 37 37 H 1.09005 * 109.46117 * 294.43281 * 12 10 9 38 38 H 1.08997 * 109.45939 * 178.49235 * 13 12 10 39 39 H 1.08996 * 109.46105 * 58.53133 * 13 12 10 40 40 H 1.09004 * 109.46726 * 179.83593 * 15 14 13 41 41 H 1.08993 * 109.47181 * 299.83253 * 15 14 13 42 42 H 1.09003 * 109.47096 * 59.84187 * 15 14 13 43 43 H 1.08997 * 109.47426 * 300.16334 * 16 14 13 44 44 H 1.08998 * 109.46797 * 60.16743 * 16 14 13 45 45 H 1.09004 * 109.47037 * 180.16170 * 16 14 13 46 46 H 1.09005 * 109.58813 * 185.57325 * 17 14 13 47 47 H 1.09006 * 109.70244 * 65.22172 * 17 14 13 48 48 H 0.96998 * 119.99588 * 354.14594 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2219 1.7675 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7427 2.4016 -1.3074 6 6 3.7141 1.9386 0.1238 7 8 4.4617 1.1525 -0.4184 8 7 4.2178 2.9653 0.8371 9 6 5.6653 3.1860 0.8813 10 6 5.9663 4.4301 1.7196 11 1 5.6123 4.2803 2.7396 12 6 7.4796 4.6935 1.7289 13 6 7.7576 6.0124 2.4539 14 6 7.0738 7.1605 1.7078 15 6 7.5943 7.2171 0.2702 16 6 7.3792 8.4825 2.4148 17 6 5.5600 6.9256 1.6946 18 7 5.2926 5.5955 1.1306 19 6 4.4279 5.4442 0.0797 20 1 4.6541 4.7421 -0.7091 21 6 3.2603 6.1933 0.0283 22 7 2.8319 6.8190 1.1041 23 14 2.3013 6.3196 -1.5697 24 1 2.8044 7.4723 -2.3591 25 1 2.4764 5.0697 -2.3522 26 1 0.8607 6.5171 -1.2682 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.6559 2.3399 -1.3640 31 1 2.0494 3.4471 -1.3380 32 1 2.1813 1.8694 -2.1515 33 1 3.6219 3.5579 1.3213 34 1 6.0420 3.3304 -0.1314 35 1 6.1516 2.3195 1.3297 36 1 7.8467 4.7571 0.7045 37 1 7.9868 3.8796 2.2471 38 1 8.8326 6.1896 2.4860 39 1 7.3683 5.9571 3.4704 40 1 7.1048 8.0331 -0.2615 41 1 8.6713 7.3843 0.2801 42 1 7.3774 6.2744 -0.2321 43 1 7.0093 8.4407 3.4392 44 1 8.4563 8.6492 2.4239 45 1 6.8896 9.2996 1.8848 46 1 5.0775 7.6864 1.0810 47 1 5.1714 6.9760 2.7118 48 1 3.2833 6.6889 1.9528 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098922693.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:04 Heat of formation + Delta-G solvation = -47.302930 kcal Electronic energy + Delta-G solvation = -26369.538947 eV Core-core repulsion = 22971.042109 eV Total energy + Delta-G solvation = -3398.496837 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.99986 -40.05565 -36.72495 -35.21099 -34.46901 -33.38757 -31.55816 -29.70280 -28.95160 -28.11782 -27.25711 -26.02096 -24.41544 -23.73705 -21.90385 -21.34119 -19.47613 -19.08598 -18.04327 -17.71294 -17.09019 -16.36682 -16.05761 -15.94454 -15.67558 -15.48558 -15.16999 -14.98460 -14.85785 -14.65783 -14.38653 -14.03493 -13.91830 -13.61615 -13.54564 -13.41673 -13.15014 -12.92122 -12.82488 -12.80778 -12.65533 -12.43376 -12.34226 -12.24198 -11.81125 -11.77811 -11.62906 -11.35243 -11.10928 -10.95507 -10.84716 -10.73304 -10.45781 -9.88122 -8.73132 -8.72182 -7.96763 -5.40777 0.43890 1.51841 1.55677 1.58260 1.72661 1.76091 2.37438 2.62335 3.34178 3.48420 3.68295 3.78866 3.90986 3.93725 4.03561 4.08535 4.22423 4.32924 4.34609 4.38165 4.42271 4.54034 4.57643 4.64292 4.69205 4.75691 4.82005 4.86923 4.90161 4.96820 5.00272 5.05155 5.06931 5.07678 5.14127 5.23112 5.27791 5.41830 5.45679 5.55253 5.60039 5.72441 6.08998 6.54057 6.63864 7.16926 7.24808 7.85021 8.36139 9.16114 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.016083 B = 0.004872 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.599905 B = 5746.202407 C = 6880.483927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.253 6.253 3 C -0.074 4.074 4 H 0.112 0.888 5 C -0.143 4.143 6 C 0.525 3.475 7 O -0.579 6.579 8 N -0.682 5.682 9 C 0.146 3.854 10 C 0.161 3.839 11 H 0.029 0.971 12 C -0.124 4.124 13 C -0.091 4.091 14 C -0.086 4.086 15 C -0.118 4.118 16 C -0.131 4.131 17 C 0.179 3.821 18 N -0.602 5.602 19 C -0.313 4.313 20 H 0.039 0.961 21 C -0.052 4.052 22 N -0.945 5.945 23 Si 1.082 2.918 24 H -0.300 1.300 25 H -0.265 1.265 26 H -0.290 1.290 27 H 0.089 0.911 28 H 0.121 0.879 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.410 0.590 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.030 0.970 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.042 0.958 46 H 0.032 0.968 47 H 0.001 0.999 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.296 -5.018 2.005 5.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.027 6.027 3 C -0.206 4.206 4 H 0.130 0.870 5 C -0.202 4.202 6 C 0.310 3.690 7 O -0.460 6.460 8 N -0.331 5.331 9 C 0.021 3.979 10 C 0.056 3.944 11 H 0.047 0.953 12 C -0.163 4.163 13 C -0.128 4.128 14 C -0.088 4.088 15 C -0.175 4.175 16 C -0.189 4.189 17 C 0.053 3.947 18 N -0.327 5.327 19 C -0.444 4.444 20 H 0.056 0.944 21 C -0.251 4.251 22 N -0.588 5.588 23 Si 0.910 3.090 24 H -0.228 1.228 25 H -0.191 1.191 26 H -0.216 1.216 27 H 0.108 0.892 28 H 0.139 0.861 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.246 0.754 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.049 0.951 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.019 0.981 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.185 -5.729 0.888 5.918 hybrid contribution 0.030 0.983 0.815 1.277 sum 1.216 -4.746 1.702 5.187 Atomic orbital electron populations 1.23588 0.91141 1.07933 1.06192 1.87241 1.10063 1.07396 1.98048 1.23156 0.95912 0.97357 1.04176 0.86956 1.22083 1.02966 1.00979 0.94134 1.19980 0.89650 0.80799 0.78542 1.90637 1.61183 1.45120 1.49107 1.45900 1.08858 1.28928 1.49420 1.21182 0.80467 0.96657 0.99566 1.20961 0.93104 0.86359 0.94014 0.95304 1.22014 0.95193 0.98117 1.01021 1.21388 1.00121 0.93334 0.97978 1.21055 0.96246 0.95691 0.95776 1.21623 0.99586 1.00688 0.95616 1.21738 1.01725 0.95692 0.99695 1.20788 0.92464 0.87070 0.94377 1.44199 1.50633 1.00543 1.37334 1.19760 0.99366 1.25829 0.99457 0.94383 1.26584 0.95578 0.98492 1.04453 1.70836 1.42320 1.45623 0.99973 0.83346 0.75482 0.76607 0.73547 1.22780 1.19077 1.21636 0.89183 0.86069 0.89403 0.88784 0.92035 0.91536 0.75350 0.93839 0.91500 0.92257 0.90431 0.90638 0.92618 0.95085 0.92012 0.93648 0.92864 0.91108 0.93861 0.94925 0.98068 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 10.46 113.37 1.19 -1.05 16 2 S -0.25 -7.48 21.27 -56.49 -1.20 -8.68 16 3 C -0.07 -2.42 3.18 29.85 0.10 -2.32 16 4 H 0.11 3.35 8.08 -2.39 -0.02 3.33 16 5 C -0.14 -4.44 9.03 71.98 0.65 -3.79 16 6 C 0.53 20.64 6.82 87.66 0.60 21.24 16 7 O -0.58 -26.17 16.40 -3.03 -0.05 -26.22 16 8 N -0.68 -26.50 3.89 -463.04 -1.80 -28.30 16 9 C 0.15 5.49 4.47 86.38 0.39 5.87 16 10 C 0.16 5.90 3.04 45.12 0.14 6.04 16 11 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 12 C -0.12 -3.76 5.05 30.82 0.16 -3.60 16 13 C -0.09 -2.57 4.71 30.62 0.14 -2.43 16 14 C -0.09 -2.81 0.77 -52.10 -0.04 -2.85 16 15 C -0.12 -3.92 7.99 71.98 0.58 -3.34 16 16 C -0.13 -3.65 8.48 71.98 0.61 -3.04 16 17 C 0.18 7.50 3.34 86.36 0.29 7.79 16 18 N -0.60 -25.83 2.15 -674.40 -1.45 -27.28 16 19 C -0.31 -15.02 6.47 84.03 0.54 -14.48 16 20 H 0.04 1.96 6.36 -2.91 -0.02 1.94 16 21 C -0.05 -2.63 4.91 84.86 0.42 -2.22 16 22 N -0.95 -51.47 12.74 21.65 0.28 -51.19 16 23 Si 1.08 47.37 28.68 68.60 1.97 49.34 16 24 H -0.30 -13.37 7.11 99.48 0.71 -12.67 16 25 H -0.27 -10.69 5.98 99.48 0.60 -10.09 16 26 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 27 H 0.09 1.50 7.26 -2.39 -0.02 1.48 16 28 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 2.29 7.10 -2.39 -0.02 2.27 16 31 H 0.06 2.19 5.46 -2.39 -0.01 2.18 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.41 16.57 7.32 -92.71 -0.68 15.89 16 34 H 0.04 1.83 7.48 -2.39 -0.02 1.81 16 35 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.06 1.91 6.33 -2.39 -0.02 1.89 16 37 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.04 1.69 5.97 -2.39 -0.01 1.68 16 43 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 44 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.03 1.61 6.88 -2.38 -0.02 1.59 16 47 H 0.00 0.06 7.68 -2.38 -0.02 0.04 16 48 H 0.26 14.34 6.36 -92.71 -0.59 13.75 16 Total: -1.00 -60.25 372.17 3.81 -56.45 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.32 Total: 34.07 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 5.75 Total: 1.82 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -2.98 Total: -106.78 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.05 Total: -26.22 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 1.97 Total: 49.34 kcal Atomic # 16 Polarization: -7.48 SS G_CDS: -1.20 Total: -8.68 kcal Total: -60.25 3.81 -56.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098922693.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.142 kcal (2) G-P(sol) polarization free energy of solvation -60.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds