Wall clock time and date at job start Tue Mar 31 2020 10:30:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08994 * 110.64377 * 2 1
4 4 C 1.54322 * 110.87345 * 236.74249 * 2 1 3
5 5 N 1.47018 * 107.27456 * 219.37463 * 4 2 1
6 6 C 1.36942 * 125.65163 * 178.99082 * 5 4 2
7 7 H 1.08000 * 119.99892 * 179.97438 * 6 5 4
8 8 C 1.38807 * 119.99500 * 359.97438 * 6 5 4
9 9 N 1.31616 * 120.00277 * 0.02562 * 8 6 5
10 10 Si 1.86802 * 119.99745 * 180.02562 * 8 6 5
11 11 H 1.48503 * 109.47154 * 0.02562 * 10 8 6
12 12 H 1.48505 * 109.47404 * 119.99819 * 10 8 6
13 13 H 1.48500 * 109.47401 * 240.00047 * 10 8 6
14 14 C 1.47431 * 108.70326 * 358.94426 * 5 4 2
15 15 C 1.54905 * 104.83014 * 24.12713 * 14 5 4
16 16 H 1.08999 * 111.03843 * 81.07993 * 15 14 5
17 17 C 1.53000 * 111.00615 * 204.91735 * 15 14 5
18 18 C 1.52997 * 109.47273 * 287.19959 * 17 15 14
19 19 N 1.46499 * 109.47555 * 179.97438 * 18 17 15
20 20 C 1.34777 * 120.00199 * 180.02562 * 19 18 17
21 21 O 1.21283 * 119.99750 * 359.97438 * 20 19 18
22 22 C 1.50702 * 119.99928 * 180.27479 * 20 19 18
23 23 F 1.39899 * 110.43178 * 308.63111 * 22 20 19
24 24 C 1.54807 * 110.48614 * 185.94221 * 22 20 19
25 25 C 1.54994 * 102.09184 * 220.44126 * 24 22 20
26 26 O 1.44381 * 103.49164 * 37.02334 * 25 24 22
27 27 C 1.43744 * 106.97263 * 319.94403 * 26 25 24
28 28 H 1.08997 * 109.47543 * 296.86641 * 1 2 3
29 29 H 1.09002 * 109.47183 * 56.86412 * 1 2 3
30 30 H 1.09001 * 109.47167 * 176.85876 * 1 2 3
31 31 H 1.09000 * 109.88528 * 338.79514 * 4 2 1
32 32 H 1.09008 * 109.87938 * 99.95884 * 4 2 1
33 33 H 0.97010 * 119.99868 * 180.02562 * 9 8 6
34 34 H 1.08997 * 110.36672 * 265.29007 * 14 5 4
35 35 H 1.08993 * 110.36575 * 142.96927 * 14 5 4
36 36 H 1.08998 * 109.47307 * 167.19435 * 17 15 14
37 37 H 1.09005 * 109.46653 * 47.19370 * 17 15 14
38 38 H 1.08998 * 109.47382 * 59.99521 * 18 17 15
39 39 H 1.09002 * 109.47216 * 299.99958 * 18 17 15
40 40 H 0.97000 * 119.99484 * 359.97438 * 19 18 17
41 41 H 1.09004 * 110.90936 * 338.64019 * 24 22 20
42 42 H 1.09008 * 110.90901 * 102.24427 * 24 22 20
43 43 H 1.09002 * 110.61920 * 278.52519 * 25 24 22
44 44 H 1.08997 * 110.61531 * 155.52632 * 25 24 22
45 45 H 1.09004 * 109.87311 * 267.08493 * 27 26 25
46 46 H 1.09004 * 110.00310 * 146.00737 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9142 1.0200 0.0000
4 6 2.0798 -0.7908 -1.2058
5 7 3.2494 -1.5471 -0.7351
6 6 4.0126 -2.3919 -1.4961
7 1 4.8556 -2.9030 -1.0550
8 6 3.7028 -2.5912 -2.8344
9 7 2.6758 -1.9679 -3.3721
10 14 4.7434 -3.7441 -3.8724
11 1 5.8300 -4.3168 -3.0377
12 1 3.8922 -4.8419 -4.3974
13 1 5.3350 -2.9906 -5.0071
14 6 3.4651 -1.2447 0.6916
15 6 2.0789 -0.7934 1.2153
16 1 1.4464 -1.6524 1.4389
17 6 2.2235 0.1113 2.4407
18 6 2.6466 -0.7285 3.6475
19 7 2.7857 0.1377 4.8208
20 6 3.1534 -0.3873 6.0063
21 8 3.3687 -1.5770 6.1020
22 6 3.2904 0.5029 7.2146
23 9 4.1037 1.6027 6.9213
24 6 3.8625 -0.2937 8.4124
25 6 3.0226 0.2511 9.5956
26 8 1.7115 0.4374 9.0204
27 6 1.9046 0.9709 7.6996
28 1 -0.3634 0.4644 0.9167
29 1 -0.3634 0.5618 -0.8606
30 1 -0.3633 -1.0261 -0.0563
31 1 1.3190 -1.4775 -1.5768
32 1 2.3776 -0.1017 -1.9963
33 1 2.4590 -2.1075 -4.3073
34 1 4.1929 -0.4410 0.8032
35 1 3.7992 -2.1363 1.2220
36 1 1.2691 0.5940 2.6506
37 1 2.9797 0.8714 2.2439
38 1 3.6011 -1.2113 3.4376
39 1 1.8906 -1.4887 3.8443
40 1 2.6138 1.0893 4.7441
41 1 3.7009 -1.3637 8.2808
42 1 4.9212 -0.0762 8.5542
43 1 3.4258 1.2007 9.9474
44 1 2.9860 -0.4757 10.4070
45 1 1.8714 2.0600 7.7314
46 1 1.1312 0.5960 7.0293
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001103366234.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:30:24
Heat of formation + Delta-G solvation = -113.786540 kcal
Electronic energy + Delta-G solvation = -26622.618409 eV
Core-core repulsion = 22655.025450 eV
Total energy + Delta-G solvation = -3967.592959 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 314.179 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-48.44684 -40.39393 -38.97782 -38.15088 -35.49929 -33.30268 -32.27701 -31.32048
-30.67446 -29.74994 -26.99602 -25.71488 -24.58177 -23.80709 -22.79780 -21.96828
-20.63809 -19.79777 -19.24784 -18.39561 -17.47141 -16.91982 -16.72306 -15.98462
-15.67301 -15.58922 -15.12783 -14.95771 -14.75133 -14.48591 -14.17820 -13.84205
-13.63329 -13.52610 -13.08042 -12.63160 -12.59503 -12.36264 -12.18327 -12.07822
-11.95462 -11.72481 -11.42671 -11.34471 -11.23477 -11.11495 -10.78986 -10.76070
-10.48428 -10.11421 -10.02580 -9.89203 -9.85148 -9.65913 -9.50289 -9.33205
-8.58347 -6.79843 -5.68970 -3.02049 2.04867 2.60633 3.24331 3.41063
3.46352 3.46821 3.49131 3.74766 4.12774 4.29245 4.49133 4.51812
4.64192 4.81277 4.96764 5.03491 5.09229 5.16961 5.22762 5.27846
5.44961 5.47417 5.54561 5.58727 5.64124 5.69825 5.86670 5.92742
6.04476 6.14519 6.17288 6.21552 6.22657 6.34126 6.50700 6.63099
6.65382 6.78607 7.00130 7.08251 7.60020 7.66750 7.73167 7.86364
8.28884 9.25097 9.85480 10.51755 11.42729
Molecular weight = 314.18amu
Principal moments of inertia in cm(-1)
A = 0.024926 B = 0.002465 C = 0.002323
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1123.052110 B =11357.072818 C =12052.160283
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.114 4.114
3 H 0.064 0.936
4 C 0.183 3.817
5 N -0.607 5.607
6 C -0.226 4.226
7 H 0.078 0.922
8 C -0.010 4.010
9 N -0.922 5.922
10 Si 0.911 3.089
11 H -0.280 1.280
12 H -0.291 1.291
13 H -0.291 1.291
14 C 0.139 3.861
15 C -0.095 4.095
16 H 0.077 0.923
17 C -0.117 4.117
18 C 0.116 3.884
19 N -0.716 5.716
20 C 0.506 3.494
21 O -0.514 6.514
22 C 0.067 3.933
23 F -0.183 7.183
24 C -0.167 4.167
25 C 0.046 3.954
26 O -0.364 6.364
27 C 0.036 3.964
28 H 0.043 0.957
29 H 0.051 0.949
30 H 0.053 0.947
31 H 0.048 0.952
32 H 0.040 0.960
33 H 0.251 0.749
34 H 0.017 0.983
35 H 0.037 0.963
36 H 0.067 0.933
37 H 0.070 0.930
38 H 0.076 0.924
39 H 0.072 0.928
40 H 0.403 0.597
41 H 0.116 0.884
42 H 0.101 0.899
43 H 0.069 0.931
44 H 0.106 0.894
45 H 0.086 0.914
46 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.718 9.240 23.226 25.144
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.134 4.134
3 H 0.082 0.918
4 C 0.058 3.942
5 N -0.333 5.333
6 C -0.354 4.354
7 H 0.095 0.905
8 C -0.206 4.206
9 N -0.570 5.570
10 Si 0.741 3.259
11 H -0.205 1.205
12 H -0.218 1.218
13 H -0.218 1.218
14 C 0.013 3.987
15 C -0.115 4.115
16 H 0.095 0.905
17 C -0.155 4.155
18 C -0.007 4.007
19 N -0.367 5.367
20 C 0.288 3.712
21 O -0.389 6.389
22 C 0.045 3.955
23 F -0.163 7.163
24 C -0.205 4.205
25 C -0.030 4.030
26 O -0.282 6.282
27 C -0.042 4.042
28 H 0.062 0.938
29 H 0.070 0.930
30 H 0.073 0.927
31 H 0.066 0.934
32 H 0.058 0.942
33 H 0.061 0.939
34 H 0.035 0.965
35 H 0.055 0.945
36 H 0.085 0.915
37 H 0.088 0.912
38 H 0.094 0.906
39 H 0.090 0.910
40 H 0.238 0.762
41 H 0.134 0.866
42 H 0.119 0.881
43 H 0.087 0.913
44 H 0.124 0.876
45 H 0.104 0.896
46 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -2.729 8.256 23.129 24.709
hybrid contribution 0.791 0.109 -0.920 1.218
sum -1.937 8.365 22.209 23.811
Atomic orbital electron populations
1.21675 0.95536 1.01569 1.00271 1.22481 0.94953 0.98948 0.96973
0.91783 1.21208 0.89066 0.93097 0.90793 1.44486 1.32398 1.51665
1.04778 1.19117 1.07347 1.17676 0.91271 0.90452 1.24799 0.98479
1.00420 0.96913 1.69980 1.28841 1.45739 1.12462 0.86055 0.79327
0.80136 0.80333 1.20517 1.21782 1.21798 1.21621 0.93267 0.97073
0.86757 1.22333 0.98956 0.97577 0.92666 0.90469 1.21761 1.01585
0.98544 0.93626 1.21625 1.02680 0.93144 0.83245 1.46068 1.68749
1.12562 1.09290 1.20276 0.77978 0.88806 0.84141 1.90758 1.48921
1.15193 1.84078 1.22569 0.92350 0.84609 0.95927 1.92949 1.74293
1.54492 1.94591 1.23718 1.01912 1.03154 0.91686 1.23680 0.82180
1.01021 0.96154 1.88953 1.27197 1.85036 1.27018 1.23751 0.94265
1.00161 0.86010 0.93837 0.92975 0.92750 0.93428 0.94226 0.93878
0.96535 0.94490 0.91465 0.91156 0.90589 0.90955 0.76212 0.86550
0.88069 0.91284 0.87621 0.89557 0.87876
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.01 9.17 37.16 0.34 -1.67 16
2 C -0.11 -2.02 3.01 -88.78 -0.27 -2.29 16
3 H 0.06 1.08 8.04 -51.93 -0.42 0.67 16
4 C 0.18 4.40 4.97 -3.07 -0.02 4.39 16
5 N -0.61 -15.60 3.39 -170.08 -0.58 -16.17 16
6 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16
7 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16
8 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16
9 N -0.92 -27.31 10.31 55.49 0.57 -26.74 16
10 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16
11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
14 C 0.14 2.83 6.19 -2.53 -0.02 2.81 16
15 C -0.10 -1.55 2.45 -88.47 -0.22 -1.77 16
16 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16
17 C -0.12 -1.39 4.84 -26.73 -0.13 -1.52 16
18 C 0.12 1.38 5.58 -4.04 -0.02 1.36 16
19 N -0.72 -7.24 5.55 -60.29 -0.33 -7.57 16
20 C 0.51 5.85 6.66 -10.98 -0.07 5.77 16
21 O -0.51 -7.76 15.42 5.55 0.09 -7.67 16
22 C 0.07 0.61 1.55 -90.25 -0.14 0.47 16
23 F -0.18 -1.71 16.86 2.25 0.04 -1.67 16
24 C -0.17 -1.35 6.38 -24.73 -0.16 -1.50 16
25 C 0.05 0.31 7.72 38.21 0.29 0.60 16
26 O -0.36 -3.33 11.52 -35.23 -0.41 -3.74 16
27 C 0.04 0.28 7.22 37.73 0.27 0.55 16
28 H 0.04 0.54 8.09 -51.93 -0.42 0.12 16
29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
30 H 0.05 0.86 8.07 -51.93 -0.42 0.45 16
31 H 0.05 1.27 7.02 -51.93 -0.36 0.91 16
32 H 0.04 1.07 7.50 -51.92 -0.39 0.68 16
33 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16
34 H 0.02 0.34 7.91 -51.93 -0.41 -0.07 16
35 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16
36 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16
37 H 0.07 0.83 7.96 -51.93 -0.41 0.41 16
38 H 0.08 1.05 7.75 -51.93 -0.40 0.65 16
39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
40 H 0.40 3.05 8.47 -40.82 -0.35 2.70 16
41 H 0.12 1.10 6.81 -51.93 -0.35 0.75 16
42 H 0.10 0.69 8.12 -51.92 -0.42 0.27 16
43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
44 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16
45 H 0.09 0.52 8.03 -51.93 -0.42 0.10 16
46 H 0.10 0.74 7.69 -51.93 -0.40 0.34 16
LS Contribution 369.86 15.07 5.57 5.57
Total: -1.00 -33.16 369.86 -8.12 -41.29
By element:
Atomic # 1 Polarization: 6.73 SS G_CDS: -7.67 Total: -0.95 kcal
Atomic # 6 Polarization: 0.67 SS G_CDS: -0.38 Total: 0.29 kcal
Atomic # 7 Polarization: -50.15 SS G_CDS: -0.34 Total: -50.49 kcal
Atomic # 8 Polarization: -11.09 SS G_CDS: -0.32 Total: -11.41 kcal
Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal
Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -33.16 -8.12 -41.29 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001103366234.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -72.501 kcal
(2) G-P(sol) polarization free energy of solvation -33.162 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.663 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.286 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.787 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds