Wall clock time and date at job start Tue Mar 31 2020 10:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.64377 * 2 1 4 4 C 1.54322 * 110.87345 * 236.74249 * 2 1 3 5 5 N 1.47018 * 107.27456 * 219.37463 * 4 2 1 6 6 C 1.36942 * 125.65163 * 178.99082 * 5 4 2 7 7 H 1.08000 * 119.99892 * 179.97438 * 6 5 4 8 8 C 1.38807 * 119.99500 * 359.97438 * 6 5 4 9 9 N 1.31616 * 120.00277 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99745 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47154 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47404 * 119.99819 * 10 8 6 13 13 H 1.48500 * 109.47401 * 240.00047 * 10 8 6 14 14 C 1.47431 * 108.70326 * 358.94426 * 5 4 2 15 15 C 1.54905 * 104.83014 * 24.12713 * 14 5 4 16 16 H 1.08999 * 111.03843 * 81.07993 * 15 14 5 17 17 C 1.53000 * 111.00615 * 204.91735 * 15 14 5 18 18 C 1.52997 * 109.47273 * 287.19959 * 17 15 14 19 19 N 1.46499 * 109.47555 * 179.97438 * 18 17 15 20 20 C 1.34777 * 120.00199 * 180.02562 * 19 18 17 21 21 O 1.21283 * 119.99750 * 359.97438 * 20 19 18 22 22 C 1.50702 * 119.99928 * 180.27479 * 20 19 18 23 23 F 1.39899 * 110.43178 * 308.63111 * 22 20 19 24 24 C 1.54807 * 110.48614 * 185.94221 * 22 20 19 25 25 C 1.54994 * 102.09184 * 220.44126 * 24 22 20 26 26 O 1.44381 * 103.49164 * 37.02334 * 25 24 22 27 27 C 1.43744 * 106.97263 * 319.94403 * 26 25 24 28 28 H 1.08997 * 109.47543 * 296.86641 * 1 2 3 29 29 H 1.09002 * 109.47183 * 56.86412 * 1 2 3 30 30 H 1.09001 * 109.47167 * 176.85876 * 1 2 3 31 31 H 1.09000 * 109.88528 * 338.79514 * 4 2 1 32 32 H 1.09008 * 109.87938 * 99.95884 * 4 2 1 33 33 H 0.97010 * 119.99868 * 180.02562 * 9 8 6 34 34 H 1.08997 * 110.36672 * 265.29007 * 14 5 4 35 35 H 1.08993 * 110.36575 * 142.96927 * 14 5 4 36 36 H 1.08998 * 109.47307 * 167.19435 * 17 15 14 37 37 H 1.09005 * 109.46653 * 47.19370 * 17 15 14 38 38 H 1.08998 * 109.47382 * 59.99521 * 18 17 15 39 39 H 1.09002 * 109.47216 * 299.99958 * 18 17 15 40 40 H 0.97000 * 119.99484 * 359.97438 * 19 18 17 41 41 H 1.09004 * 110.90936 * 338.64019 * 24 22 20 42 42 H 1.09008 * 110.90901 * 102.24427 * 24 22 20 43 43 H 1.09002 * 110.61920 * 278.52519 * 25 24 22 44 44 H 1.08997 * 110.61531 * 155.52632 * 25 24 22 45 45 H 1.09004 * 109.87311 * 267.08493 * 27 26 25 46 46 H 1.09004 * 110.00310 * 146.00737 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0798 -0.7908 -1.2058 5 7 3.2494 -1.5471 -0.7351 6 6 4.0126 -2.3919 -1.4961 7 1 4.8556 -2.9030 -1.0550 8 6 3.7028 -2.5912 -2.8344 9 7 2.6758 -1.9679 -3.3721 10 14 4.7434 -3.7441 -3.8724 11 1 5.8300 -4.3168 -3.0377 12 1 3.8922 -4.8419 -4.3974 13 1 5.3350 -2.9906 -5.0071 14 6 3.4651 -1.2447 0.6916 15 6 2.0789 -0.7934 1.2153 16 1 1.4464 -1.6524 1.4389 17 6 2.2235 0.1113 2.4407 18 6 2.6466 -0.7285 3.6475 19 7 2.7857 0.1377 4.8208 20 6 3.1534 -0.3873 6.0063 21 8 3.3687 -1.5770 6.1020 22 6 3.2904 0.5029 7.2146 23 9 4.1037 1.6027 6.9213 24 6 3.8625 -0.2937 8.4124 25 6 3.0226 0.2511 9.5956 26 8 1.7115 0.4374 9.0204 27 6 1.9046 0.9709 7.6996 28 1 -0.3634 0.4644 0.9167 29 1 -0.3634 0.5618 -0.8606 30 1 -0.3633 -1.0261 -0.0563 31 1 1.3190 -1.4775 -1.5768 32 1 2.3776 -0.1017 -1.9963 33 1 2.4590 -2.1075 -4.3073 34 1 4.1929 -0.4410 0.8032 35 1 3.7992 -2.1363 1.2220 36 1 1.2691 0.5940 2.6506 37 1 2.9797 0.8714 2.2439 38 1 3.6011 -1.2113 3.4376 39 1 1.8906 -1.4887 3.8443 40 1 2.6138 1.0893 4.7441 41 1 3.7009 -1.3637 8.2808 42 1 4.9212 -0.0762 8.5542 43 1 3.4258 1.2007 9.9474 44 1 2.9860 -0.4757 10.4070 45 1 1.8714 2.0600 7.7314 46 1 1.1312 0.5960 7.0293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103366234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:24 Heat of formation + Delta-G solvation = -113.786540 kcal Electronic energy + Delta-G solvation = -26622.618409 eV Core-core repulsion = 22655.025450 eV Total energy + Delta-G solvation = -3967.592959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.179 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.44684 -40.39393 -38.97782 -38.15088 -35.49929 -33.30268 -32.27701 -31.32048 -30.67446 -29.74994 -26.99602 -25.71488 -24.58177 -23.80709 -22.79780 -21.96828 -20.63809 -19.79777 -19.24784 -18.39561 -17.47141 -16.91982 -16.72306 -15.98462 -15.67301 -15.58922 -15.12783 -14.95771 -14.75133 -14.48591 -14.17820 -13.84205 -13.63329 -13.52610 -13.08042 -12.63160 -12.59503 -12.36264 -12.18327 -12.07822 -11.95462 -11.72481 -11.42671 -11.34471 -11.23477 -11.11495 -10.78986 -10.76070 -10.48428 -10.11421 -10.02580 -9.89203 -9.85148 -9.65913 -9.50289 -9.33205 -8.58347 -6.79843 -5.68970 -3.02049 2.04867 2.60633 3.24331 3.41063 3.46352 3.46821 3.49131 3.74766 4.12774 4.29245 4.49133 4.51812 4.64192 4.81277 4.96764 5.03491 5.09229 5.16961 5.22762 5.27846 5.44961 5.47417 5.54561 5.58727 5.64124 5.69825 5.86670 5.92742 6.04476 6.14519 6.17288 6.21552 6.22657 6.34126 6.50700 6.63099 6.65382 6.78607 7.00130 7.08251 7.60020 7.66750 7.73167 7.86364 8.28884 9.25097 9.85480 10.51755 11.42729 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.024926 B = 0.002465 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.052110 B =11357.072818 C =12052.160283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.064 0.936 4 C 0.183 3.817 5 N -0.607 5.607 6 C -0.226 4.226 7 H 0.078 0.922 8 C -0.010 4.010 9 N -0.922 5.922 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.139 3.861 15 C -0.095 4.095 16 H 0.077 0.923 17 C -0.117 4.117 18 C 0.116 3.884 19 N -0.716 5.716 20 C 0.506 3.494 21 O -0.514 6.514 22 C 0.067 3.933 23 F -0.183 7.183 24 C -0.167 4.167 25 C 0.046 3.954 26 O -0.364 6.364 27 C 0.036 3.964 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.251 0.749 34 H 0.017 0.983 35 H 0.037 0.963 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.403 0.597 41 H 0.116 0.884 42 H 0.101 0.899 43 H 0.069 0.931 44 H 0.106 0.894 45 H 0.086 0.914 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.718 9.240 23.226 25.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.082 0.918 4 C 0.058 3.942 5 N -0.333 5.333 6 C -0.354 4.354 7 H 0.095 0.905 8 C -0.206 4.206 9 N -0.570 5.570 10 Si 0.741 3.259 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.013 3.987 15 C -0.115 4.115 16 H 0.095 0.905 17 C -0.155 4.155 18 C -0.007 4.007 19 N -0.367 5.367 20 C 0.288 3.712 21 O -0.389 6.389 22 C 0.045 3.955 23 F -0.163 7.163 24 C -0.205 4.205 25 C -0.030 4.030 26 O -0.282 6.282 27 C -0.042 4.042 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.035 0.965 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.238 0.762 41 H 0.134 0.866 42 H 0.119 0.881 43 H 0.087 0.913 44 H 0.124 0.876 45 H 0.104 0.896 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.729 8.256 23.129 24.709 hybrid contribution 0.791 0.109 -0.920 1.218 sum -1.937 8.365 22.209 23.811 Atomic orbital electron populations 1.21675 0.95536 1.01569 1.00271 1.22481 0.94953 0.98948 0.96973 0.91783 1.21208 0.89066 0.93097 0.90793 1.44486 1.32398 1.51665 1.04778 1.19117 1.07347 1.17676 0.91271 0.90452 1.24799 0.98479 1.00420 0.96913 1.69980 1.28841 1.45739 1.12462 0.86055 0.79327 0.80136 0.80333 1.20517 1.21782 1.21798 1.21621 0.93267 0.97073 0.86757 1.22333 0.98956 0.97577 0.92666 0.90469 1.21761 1.01585 0.98544 0.93626 1.21625 1.02680 0.93144 0.83245 1.46068 1.68749 1.12562 1.09290 1.20276 0.77978 0.88806 0.84141 1.90758 1.48921 1.15193 1.84078 1.22569 0.92350 0.84609 0.95927 1.92949 1.74293 1.54492 1.94591 1.23718 1.01912 1.03154 0.91686 1.23680 0.82180 1.01021 0.96154 1.88953 1.27197 1.85036 1.27018 1.23751 0.94265 1.00161 0.86010 0.93837 0.92975 0.92750 0.93428 0.94226 0.93878 0.96535 0.94490 0.91465 0.91156 0.90589 0.90955 0.76212 0.86550 0.88069 0.91284 0.87621 0.89557 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.17 37.16 0.34 -1.67 16 2 C -0.11 -2.02 3.01 -88.78 -0.27 -2.29 16 3 H 0.06 1.08 8.04 -51.93 -0.42 0.67 16 4 C 0.18 4.40 4.97 -3.07 -0.02 4.39 16 5 N -0.61 -15.60 3.39 -170.08 -0.58 -16.17 16 6 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 7 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 8 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 9 N -0.92 -27.31 10.31 55.49 0.57 -26.74 16 10 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 C 0.14 2.83 6.19 -2.53 -0.02 2.81 16 15 C -0.10 -1.55 2.45 -88.47 -0.22 -1.77 16 16 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 17 C -0.12 -1.39 4.84 -26.73 -0.13 -1.52 16 18 C 0.12 1.38 5.58 -4.04 -0.02 1.36 16 19 N -0.72 -7.24 5.55 -60.29 -0.33 -7.57 16 20 C 0.51 5.85 6.66 -10.98 -0.07 5.77 16 21 O -0.51 -7.76 15.42 5.55 0.09 -7.67 16 22 C 0.07 0.61 1.55 -90.25 -0.14 0.47 16 23 F -0.18 -1.71 16.86 2.25 0.04 -1.67 16 24 C -0.17 -1.35 6.38 -24.73 -0.16 -1.50 16 25 C 0.05 0.31 7.72 38.21 0.29 0.60 16 26 O -0.36 -3.33 11.52 -35.23 -0.41 -3.74 16 27 C 0.04 0.28 7.22 37.73 0.27 0.55 16 28 H 0.04 0.54 8.09 -51.93 -0.42 0.12 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.86 8.07 -51.93 -0.42 0.45 16 31 H 0.05 1.27 7.02 -51.93 -0.36 0.91 16 32 H 0.04 1.07 7.50 -51.92 -0.39 0.68 16 33 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.02 0.34 7.91 -51.93 -0.41 -0.07 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 37 H 0.07 0.83 7.96 -51.93 -0.41 0.41 16 38 H 0.08 1.05 7.75 -51.93 -0.40 0.65 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.40 3.05 8.47 -40.82 -0.35 2.70 16 41 H 0.12 1.10 6.81 -51.93 -0.35 0.75 16 42 H 0.10 0.69 8.12 -51.92 -0.42 0.27 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.52 8.03 -51.93 -0.42 0.10 16 46 H 0.10 0.74 7.69 -51.93 -0.40 0.34 16 LS Contribution 369.86 15.07 5.57 5.57 Total: -1.00 -33.16 369.86 -8.12 -41.29 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -7.67 Total: -0.95 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -0.38 Total: 0.29 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.34 Total: -50.49 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.32 Total: -11.41 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.16 -8.12 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103366234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.501 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds