Wall clock time and date at job start Tue Mar 31 2020 10:30:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08994 * 110.64377 * 2 1
4 4 C 1.54322 * 110.87345 * 236.74249 * 2 1 3
5 5 N 1.47018 * 107.27456 * 219.37463 * 4 2 1
6 6 C 1.36942 * 125.65163 * 178.99082 * 5 4 2
7 7 H 1.08000 * 119.99892 * 179.97438 * 6 5 4
8 8 C 1.38807 * 119.99500 * 359.97438 * 6 5 4
9 9 N 1.31616 * 120.00277 * 0.02562 * 8 6 5
10 10 Si 1.86802 * 119.99745 * 180.02562 * 8 6 5
11 11 H 1.48503 * 109.47154 * 0.02562 * 10 8 6
12 12 H 1.48505 * 109.47404 * 119.99819 * 10 8 6
13 13 H 1.48500 * 109.47401 * 240.00047 * 10 8 6
14 14 C 1.47431 * 108.70326 * 358.94426 * 5 4 2
15 15 C 1.54905 * 104.83014 * 24.12713 * 14 5 4
16 16 H 1.08999 * 111.03843 * 81.07993 * 15 14 5
17 17 C 1.53000 * 111.00615 * 204.91735 * 15 14 5
18 18 C 1.52997 * 109.47273 * 287.19959 * 17 15 14
19 19 N 1.46499 * 109.47555 * 179.97438 * 18 17 15
20 20 C 1.34777 * 120.00199 * 180.02562 * 19 18 17
21 21 O 1.21283 * 119.99750 * 359.97438 * 20 19 18
22 22 C 1.50702 * 119.99928 * 180.27479 * 20 19 18
23 23 F 1.39899 * 110.43178 * 308.63111 * 22 20 19
24 24 C 1.54807 * 110.48614 * 185.94221 * 22 20 19
25 25 C 1.54994 * 102.09184 * 220.44126 * 24 22 20
26 26 O 1.44381 * 103.49164 * 37.02334 * 25 24 22
27 27 C 1.43744 * 106.97263 * 319.94403 * 26 25 24
28 28 H 1.08997 * 109.47543 * 296.86641 * 1 2 3
29 29 H 1.09002 * 109.47183 * 56.86412 * 1 2 3
30 30 H 1.09001 * 109.47167 * 176.85876 * 1 2 3
31 31 H 1.09000 * 109.88528 * 338.79514 * 4 2 1
32 32 H 1.09008 * 109.87938 * 99.95884 * 4 2 1
33 33 H 0.97010 * 119.99868 * 180.02562 * 9 8 6
34 34 H 1.08997 * 110.36672 * 265.29007 * 14 5 4
35 35 H 1.08993 * 110.36575 * 142.96927 * 14 5 4
36 36 H 1.08998 * 109.47307 * 167.19435 * 17 15 14
37 37 H 1.09005 * 109.46653 * 47.19370 * 17 15 14
38 38 H 1.08998 * 109.47382 * 59.99521 * 18 17 15
39 39 H 1.09002 * 109.47216 * 299.99958 * 18 17 15
40 40 H 0.97000 * 119.99484 * 359.97438 * 19 18 17
41 41 H 1.09004 * 110.90936 * 338.64019 * 24 22 20
42 42 H 1.09008 * 110.90901 * 102.24427 * 24 22 20
43 43 H 1.09002 * 110.61920 * 278.52519 * 25 24 22
44 44 H 1.08997 * 110.61531 * 155.52632 * 25 24 22
45 45 H 1.09004 * 109.87311 * 267.08493 * 27 26 25
46 46 H 1.09004 * 110.00310 * 146.00737 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9142 1.0200 0.0000
4 6 2.0798 -0.7908 -1.2058
5 7 3.2494 -1.5471 -0.7351
6 6 4.0126 -2.3919 -1.4961
7 1 4.8556 -2.9030 -1.0550
8 6 3.7028 -2.5912 -2.8344
9 7 2.6758 -1.9679 -3.3721
10 14 4.7434 -3.7441 -3.8724
11 1 5.8300 -4.3168 -3.0377
12 1 3.8922 -4.8419 -4.3974
13 1 5.3350 -2.9906 -5.0071
14 6 3.4651 -1.2447 0.6916
15 6 2.0789 -0.7934 1.2153
16 1 1.4464 -1.6524 1.4389
17 6 2.2235 0.1113 2.4407
18 6 2.6466 -0.7285 3.6475
19 7 2.7857 0.1377 4.8208
20 6 3.1534 -0.3873 6.0063
21 8 3.3687 -1.5770 6.1020
22 6 3.2904 0.5029 7.2146
23 9 4.1037 1.6027 6.9213
24 6 3.8625 -0.2937 8.4124
25 6 3.0226 0.2511 9.5956
26 8 1.7115 0.4374 9.0204
27 6 1.9046 0.9709 7.6996
28 1 -0.3634 0.4644 0.9167
29 1 -0.3634 0.5618 -0.8606
30 1 -0.3633 -1.0261 -0.0563
31 1 1.3190 -1.4775 -1.5768
32 1 2.3776 -0.1017 -1.9963
33 1 2.4590 -2.1075 -4.3073
34 1 4.1929 -0.4410 0.8032
35 1 3.7992 -2.1363 1.2220
36 1 1.2691 0.5940 2.6506
37 1 2.9797 0.8714 2.2439
38 1 3.6011 -1.2113 3.4376
39 1 1.8906 -1.4887 3.8443
40 1 2.6138 1.0893 4.7441
41 1 3.7009 -1.3637 8.2808
42 1 4.9212 -0.0762 8.5542
43 1 3.4258 1.2007 9.9474
44 1 2.9860 -0.4757 10.4070
45 1 1.8714 2.0600 7.7314
46 1 1.1312 0.5960 7.0293
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001103366234.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:30:24
Heat of formation + Delta-G solvation = -136.760141 kcal
Electronic energy + Delta-G solvation = -26623.614619 eV
Core-core repulsion = 22655.025450 eV
Total energy + Delta-G solvation = -3968.589169 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 314.179 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-49.15647 -41.22729 -39.90449 -39.47564 -36.63376 -35.05675 -33.07293 -32.53658
-32.41016 -30.44992 -28.48047 -27.45419 -25.85473 -24.74104 -23.76430 -23.09890
-21.66328 -21.24457 -20.67569 -19.20344 -18.86729 -18.11251 -17.59223 -17.01189
-16.75754 -16.48879 -16.22709 -16.00026 -15.71916 -15.68929 -15.48605 -15.22684
-14.75663 -14.48917 -14.19879 -14.16987 -13.82100 -13.45056 -13.39333 -13.29710
-12.93730 -12.82971 -12.76943 -12.70563 -12.63477 -12.38603 -12.25164 -11.97211
-11.89551 -11.81838 -11.44128 -11.33762 -11.21010 -11.02603 -10.76452 -10.71485
-10.27137 -8.89007 -7.86077 -5.21269 1.16931 1.43203 1.44155 1.54620
1.76767 2.47856 2.67402 2.79077 3.10747 3.31387 3.39905 3.63413
3.70114 3.76076 3.90132 3.93756 4.03077 4.14067 4.24269 4.32633
4.43484 4.50662 4.56832 4.61671 4.67449 4.72466 4.74060 4.74693
4.81901 4.92775 5.00469 5.01556 5.11232 5.17220 5.24506 5.30705
5.40782 5.46676 5.54532 5.61113 5.75450 5.83866 6.20644 6.26086
6.90710 7.10661 7.78677 8.42779 9.24062
Molecular weight = 314.18amu
Principal moments of inertia in cm(-1)
A = 0.024926 B = 0.002465 C = 0.002323
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1123.052110 B =11357.072818 C =12052.160283
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.101 4.101
3 H 0.080 0.920
4 C 0.189 3.811
5 N -0.632 5.632
6 C -0.242 4.242
7 H 0.078 0.922
8 C -0.068 4.068
9 N -0.950 5.950
10 Si 0.977 3.023
11 H -0.267 1.267
12 H -0.291 1.291
13 H -0.291 1.291
14 C 0.132 3.868
15 C -0.079 4.079
16 H 0.073 0.927
17 C -0.101 4.101
18 C 0.121 3.879
19 N -0.703 5.703
20 C 0.502 3.498
21 O -0.556 6.556
22 C 0.072 3.928
23 F -0.183 7.183
24 C -0.170 4.170
25 C 0.047 3.953
26 O -0.385 6.385
27 C 0.038 3.962
28 H 0.084 0.916
29 H 0.051 0.949
30 H 0.040 0.960
31 H 0.010 0.990
32 H -0.001 1.001
33 H 0.246 0.754
34 H 0.024 0.976
35 H 0.032 0.968
36 H 0.101 0.899
37 H 0.079 0.921
38 H 0.053 0.947
39 H 0.068 0.932
40 H 0.419 0.581
41 H 0.098 0.902
42 H 0.111 0.889
43 H 0.087 0.913
44 H 0.120 0.880
45 H 0.108 0.892
46 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.067 10.833 25.394 27.778
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.121 4.121
3 H 0.098 0.902
4 C 0.064 3.936
5 N -0.358 5.358
6 C -0.371 4.371
7 H 0.096 0.904
8 C -0.261 4.261
9 N -0.600 5.600
10 Si 0.806 3.194
11 H -0.192 1.192
12 H -0.218 1.218
13 H -0.218 1.218
14 C 0.007 3.993
15 C -0.099 4.099
16 H 0.091 0.909
17 C -0.139 4.139
18 C -0.002 4.002
19 N -0.354 5.354
20 C 0.285 3.715
21 O -0.434 6.434
22 C 0.050 3.950
23 F -0.163 7.163
24 C -0.208 4.208
25 C -0.028 4.028
26 O -0.304 6.304
27 C -0.040 4.040
28 H 0.103 0.897
29 H 0.070 0.930
30 H 0.059 0.941
31 H 0.029 0.971
32 H 0.017 0.983
33 H 0.055 0.945
34 H 0.041 0.959
35 H 0.051 0.949
36 H 0.119 0.881
37 H 0.098 0.902
38 H 0.072 0.928
39 H 0.086 0.914
40 H 0.257 0.743
41 H 0.116 0.884
42 H 0.130 0.870
43 H 0.105 0.895
44 H 0.138 0.862
45 H 0.126 0.874
46 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges -3.074 9.891 25.332 27.367
hybrid contribution 0.954 -0.395 -1.584 1.890
sum -2.120 9.496 23.748 25.664
Atomic orbital electron populations
1.21634 0.93119 1.01265 1.02403 1.22361 0.96814 0.98627 0.94251
0.90180 1.21015 0.87851 0.91960 0.92787 1.44849 1.32542 1.51451
1.06975 1.19488 1.07666 1.17954 0.92010 0.90394 1.25651 0.99934
1.02339 0.98187 1.70208 1.30349 1.47121 1.12289 0.85026 0.77960
0.77971 0.78493 1.19167 1.21813 1.21769 1.21851 0.96131 0.97129
0.84191 1.22197 0.95733 0.98086 0.93888 0.90852 1.21614 1.03752
0.97496 0.91015 1.21409 1.01404 0.93374 0.84029 1.45912 1.67942
1.13185 1.08380 1.20759 0.77101 0.88632 0.84988 1.90744 1.50751
1.17117 1.84814 1.22517 0.93475 0.84269 0.94763 1.92952 1.74443
1.54354 1.94570 1.23739 1.02907 1.02044 0.92081 1.23838 0.80969
1.02291 0.95733 1.88928 1.28492 1.85339 1.27597 1.23841 0.93180
1.01343 0.85601 0.89729 0.93008 0.94097 0.97147 0.98318 0.94457
0.95863 0.94936 0.88089 0.90211 0.92839 0.91389 0.74350 0.88364
0.87045 0.89479 0.86206 0.87390 0.87469
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.55 9.17 71.98 0.66 -2.89 16
2 C -0.10 -3.46 3.01 -9.60 -0.03 -3.48 16
3 H 0.08 2.51 8.04 -2.39 -0.02 2.49 16
4 C 0.19 9.39 4.97 86.73 0.43 9.83 16
5 N -0.63 -33.34 3.39 -692.00 -2.35 -35.69 16
6 C -0.24 -14.05 10.28 84.03 0.86 -13.18 16
7 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16
8 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16
9 N -0.95 -58.53 10.31 21.65 0.22 -58.31 16
10 Si 0.98 47.06 29.55 68.60 2.03 49.09 16
11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16
12 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16
13 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16
14 C 0.13 5.36 6.19 86.85 0.54 5.90 16
15 C -0.08 -2.44 2.45 -9.40 -0.02 -2.46 16
16 H 0.07 2.35 8.05 -2.39 -0.02 2.33 16
17 C -0.10 -2.05 4.84 30.59 0.15 -1.90 16
18 C 0.12 2.66 5.58 86.38 0.48 3.14 16
19 N -0.70 -12.53 5.55 -463.06 -2.57 -15.10 16
20 C 0.50 10.92 6.66 87.66 0.58 11.50 16
21 O -0.56 -16.70 15.42 -3.04 -0.05 -16.75 16
22 C 0.07 1.15 1.55 -10.55 -0.02 1.14 16
23 F -0.18 -2.95 16.86 44.97 0.76 -2.20 16
24 C -0.17 -2.51 6.38 31.89 0.20 -2.31 16
25 C 0.05 0.53 7.72 72.66 0.56 1.09 16
26 O -0.38 -6.22 11.52 -148.98 -1.72 -7.93 16
27 C 0.04 0.49 7.22 72.35 0.52 1.01 16
28 H 0.08 1.71 8.09 -2.39 -0.02 1.69 16
29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16
30 H 0.04 1.25 8.07 -2.39 -0.02 1.23 16
31 H 0.01 0.58 7.02 -2.39 -0.02 0.56 16
32 H 0.00 -0.08 7.50 -2.38 -0.02 -0.10 16
33 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16
34 H 0.02 0.93 7.91 -2.39 -0.02 0.91 16
35 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16
36 H 0.10 1.49 8.09 -2.39 -0.02 1.47 16
37 H 0.08 1.55 7.96 -2.38 -0.02 1.53 16
38 H 0.05 1.44 7.75 -2.39 -0.02 1.42 16
39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16
40 H 0.42 4.84 8.47 -92.71 -0.79 4.06 16
41 H 0.10 1.84 6.81 -2.38 -0.02 1.83 16
42 H 0.11 1.36 8.12 -2.38 -0.02 1.34 16
43 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16
44 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16
45 H 0.11 0.92 8.03 -2.38 -0.02 0.91 16
46 H 0.11 1.26 7.69 -2.38 -0.02 1.24 16
Total: -1.00 -75.76 369.86 1.90 -73.86
By element:
Atomic # 1 Polarization: 9.00 SS G_CDS: 0.18 Total: 9.18 kcal
Atomic # 6 Polarization: -1.55 SS G_CDS: 5.39 Total: 3.84 kcal
Atomic # 7 Polarization: -104.40 SS G_CDS: -4.70 Total: -109.09 kcal
Atomic # 8 Polarization: -22.92 SS G_CDS: -1.76 Total: -24.68 kcal
Atomic # 9 Polarization: -2.95 SS G_CDS: 0.76 Total: -2.20 kcal
Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal
Total: -75.76 1.90 -73.86 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001103366234.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.904 kcal
(2) G-P(sol) polarization free energy of solvation -75.756 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.659 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.856 kcal
(6) G-S(sol) free energy of system = (1) + (5) -136.760 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds