Wall clock time and date at job start Tue Mar 31 2020 10:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81397 * 103.00023 * 2 1 4 4 H 1.09007 * 109.47112 * 55.00106 * 3 2 1 5 5 C 1.53008 * 109.47219 * 295.00261 * 3 2 1 6 6 C 1.53003 * 109.47314 * 175.00534 * 3 2 1 7 7 C 1.50705 * 109.46413 * 294.99728 * 6 3 2 8 8 O 1.21276 * 120.00374 * 0.02562 * 7 6 3 9 9 N 1.34778 * 119.99371 * 179.97438 * 7 6 3 10 10 C 1.47019 * 125.65277 * 359.97438 * 9 7 6 11 11 C 1.54321 * 107.27531 * 178.97403 * 10 9 7 12 12 H 1.09002 * 110.72109 * 96.17040 * 11 10 9 13 13 C 1.53003 * 110.72129 * 219.26706 * 11 10 9 14 14 C 1.55157 * 103.10033 * 337.71659 * 11 10 9 15 15 H 1.09001 * 111.00741 * 277.51995 * 14 11 10 16 16 C 1.53000 * 111.00230 * 153.66249 * 14 11 10 17 17 C 1.53007 * 109.46856 * 174.99947 * 16 14 11 18 18 N 1.46498 * 109.46789 * 180.02562 * 17 16 14 19 19 C 1.36945 * 119.99866 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99974 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00180 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99755 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00095 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47220 * 59.99651 * 23 21 19 25 25 H 1.48498 * 109.47110 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47220 * 299.99498 * 23 21 19 27 27 C 1.47431 * 125.64579 * 180.02562 * 9 7 6 28 28 H 1.09005 * 109.46666 * 299.99901 * 1 2 3 29 29 H 1.08996 * 109.47286 * 59.99274 * 1 2 3 30 30 H 1.08996 * 109.47096 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46733 * 60.00111 * 5 3 2 32 32 H 1.09006 * 109.46895 * 179.97438 * 5 3 2 33 33 H 1.08994 * 109.46838 * 299.99689 * 5 3 2 34 34 H 1.09003 * 109.47136 * 175.00242 * 6 3 2 35 35 H 1.08996 * 109.46929 * 54.99631 * 6 3 2 36 36 H 1.09001 * 109.88251 * 59.55144 * 10 9 7 37 37 H 1.09004 * 109.88394 * 298.39057 * 10 9 7 38 38 H 1.08995 * 109.46744 * 56.15366 * 13 11 10 39 39 H 1.09003 * 109.46886 * 176.15524 * 13 11 10 40 40 H 1.08993 * 109.46803 * 296.15500 * 13 11 10 41 41 H 1.08995 * 109.47545 * 294.99634 * 16 14 11 42 42 H 1.08993 * 109.47160 * 55.00331 * 16 14 11 43 43 H 1.08993 * 109.47522 * 300.00197 * 17 16 14 44 44 H 1.09003 * 109.46991 * 60.00326 * 17 16 14 45 45 H 0.96993 * 120.00651 * 0.02562 * 18 17 16 46 46 H 0.97002 * 119.99576 * 180.02562 * 22 21 19 47 47 H 1.08999 * 110.36190 * 322.93058 * 27 9 7 48 48 H 1.08999 * 110.36356 * 85.25579 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2541 0.8419 5 6 1.7427 2.4016 -1.3074 6 6 3.7370 1.9412 0.1256 7 6 4.1919 1.4270 1.4672 8 8 3.3842 0.9665 2.2458 9 7 5.4967 1.4779 1.8011 10 6 6.5775 2.0066 0.9562 11 6 7.8892 1.8839 1.7599 12 1 8.4226 0.9723 1.4906 13 6 8.7751 3.1119 1.5409 14 6 7.3962 1.8177 3.2296 15 1 7.2010 2.8158 3.6216 16 6 8.3992 1.0710 4.1113 17 6 7.9417 1.1340 5.5700 18 7 8.9024 0.4196 6.4143 19 6 8.7001 0.3415 7.7665 20 1 7.8321 0.8062 8.2104 21 6 9.6106 -0.3350 8.5666 22 7 10.6682 -0.9018 8.0255 23 14 9.3342 -0.4421 10.4109 24 1 8.0436 -1.1258 10.6791 25 1 10.4413 -1.2114 11.0334 26 1 9.2984 0.9264 10.9864 27 6 6.0766 1.0118 3.0739 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 0.6635 2.2779 -1.3968 32 1 1.9875 3.4638 -1.3071 33 1 2.2353 1.9150 -2.1491 34 1 3.9902 2.9977 0.0365 35 1 4.2338 1.3804 -0.6660 36 1 6.3845 3.0528 0.7189 37 1 6.6494 1.4233 0.0382 38 1 8.2196 4.0121 1.8038 39 1 9.6628 3.0362 2.1691 40 1 9.0741 3.1622 0.4940 41 1 8.4578 0.0300 3.7936 42 1 9.3809 1.5352 4.0181 43 1 7.8830 2.1749 5.8878 44 1 6.9599 0.6698 5.6632 45 1 9.6817 0.0019 6.0157 46 1 11.3042 -1.3748 8.5847 47 1 5.4004 1.2287 3.9008 48 1 6.2881 -0.0564 3.0257 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104087535.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:09 Heat of formation + Delta-G solvation = -62.349030 kcal Electronic energy + Delta-G solvation = -24089.348797 eV Core-core repulsion = 20690.199512 eV Total energy + Delta-G solvation = -3399.149285 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.22604 -39.21141 -36.87774 -35.53682 -34.61192 -33.42649 -31.83496 -30.29571 -29.28240 -27.93859 -27.17506 -25.81209 -24.02732 -22.95925 -21.99947 -21.09125 -20.22218 -19.17849 -18.00086 -17.76530 -17.11476 -16.75184 -16.63156 -15.85119 -15.63805 -15.38797 -15.29405 -15.03570 -14.79855 -14.60369 -14.32768 -14.19115 -13.90931 -13.61173 -13.52099 -13.42997 -13.10838 -13.00373 -12.86928 -12.84960 -12.61266 -12.47374 -12.35611 -12.27929 -12.17960 -12.14910 -11.91107 -11.60073 -11.56431 -11.19462 -10.93311 -10.87763 -10.69770 -9.62785 -9.02578 -8.49103 -7.97527 -5.26744 0.79880 1.45072 1.48693 1.54866 1.67591 1.69870 1.99829 2.54299 3.34301 3.35867 3.55102 3.60778 3.70201 3.74963 4.10810 4.17198 4.21523 4.27292 4.29610 4.30640 4.33406 4.45661 4.51901 4.52520 4.59489 4.63272 4.66792 4.73386 4.77060 4.79194 4.85985 4.90941 4.94249 4.99679 5.05150 5.18544 5.23218 5.27092 5.30065 5.35479 5.44115 5.47165 5.54719 6.25403 6.57419 7.20195 7.31168 8.07180 8.31046 9.25816 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.017168 B = 0.002470 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.554458 B =11332.919773 C =12603.580131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.317 6.317 3 C -0.032 4.032 4 H 0.077 0.923 5 C -0.139 4.139 6 C -0.110 4.110 7 C 0.511 3.489 8 O -0.569 6.569 9 N -0.621 5.621 10 C 0.104 3.896 11 C -0.094 4.094 12 H 0.087 0.913 13 C -0.137 4.137 14 C -0.079 4.079 15 H 0.088 0.912 16 C -0.099 4.099 17 C 0.150 3.850 18 N -0.748 5.748 19 C -0.251 4.251 20 H 0.071 0.929 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.975 3.025 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.276 1.276 27 C 0.111 3.889 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.140 0.860 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.019 0.981 44 H 0.010 0.990 45 H 0.375 0.625 46 H 0.253 0.747 47 H 0.052 0.948 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.869 11.309 -26.754 32.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.092 6.092 3 C -0.161 4.161 4 H 0.095 0.905 5 C -0.198 4.198 6 C -0.150 4.150 7 C 0.301 3.699 8 O -0.447 6.447 9 N -0.355 5.355 10 C -0.018 4.018 11 C -0.113 4.113 12 H 0.105 0.895 13 C -0.195 4.195 14 C -0.099 4.099 15 H 0.107 0.893 16 C -0.137 4.137 17 C 0.024 3.976 18 N -0.390 5.390 19 C -0.383 4.383 20 H 0.089 0.911 21 C -0.268 4.268 22 N -0.619 5.619 23 Si 0.803 3.197 24 H -0.206 1.206 25 H -0.217 1.217 26 H -0.202 1.202 27 C -0.012 4.012 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.157 0.843 35 H 0.134 0.866 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.037 0.963 44 H 0.028 0.972 45 H 0.207 0.793 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.821 10.226 -26.221 31.809 hybrid contribution -0.558 0.164 1.562 1.667 sum -15.379 10.391 -24.659 30.864 Atomic orbital electron populations 1.23364 0.91899 1.06921 1.05419 1.87220 1.10277 1.13808 1.97870 1.22924 0.97965 0.92694 1.02562 0.90493 1.22064 1.01790 1.01766 0.94204 1.21579 0.94198 1.05429 0.93777 1.20970 0.80394 0.78501 0.90063 1.90754 1.53115 1.47078 1.53781 1.48629 1.06801 1.61937 1.18168 1.22386 0.84944 1.00660 0.93818 1.22262 0.95403 1.01131 0.92495 0.89492 1.21734 0.99030 0.95805 1.02899 1.22352 0.92627 0.99011 0.95908 0.89344 1.21503 0.98998 1.00383 0.92786 1.20834 0.91835 0.94279 0.90646 1.42586 1.27385 1.65028 1.04032 1.19595 1.05809 1.27728 0.85130 0.91070 1.25597 0.97348 1.01120 1.02702 1.69808 1.14472 1.41669 1.35934 0.85195 0.76816 0.77752 0.79915 1.20623 1.21728 1.20190 1.22265 0.94647 0.97991 0.86318 0.90889 0.88675 0.87839 0.91885 0.89431 0.90586 0.84261 0.86603 0.88642 0.89425 0.91822 0.92733 0.90292 0.92262 0.90773 0.96321 0.97214 0.79320 0.93854 0.92936 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 10.45 113.37 1.19 -0.45 16 2 S -0.32 -7.05 20.24 -56.49 -1.14 -8.19 16 3 C -0.03 -0.52 2.44 30.60 0.07 -0.45 16 4 H 0.08 1.49 7.96 -2.39 -0.02 1.47 16 5 C -0.14 -1.21 9.10 71.98 0.66 -0.55 16 6 C -0.11 -1.57 4.37 29.85 0.13 -1.44 16 7 C 0.51 12.67 7.56 87.66 0.66 13.33 16 8 O -0.57 -19.73 15.05 -3.02 -0.05 -19.78 16 9 N -0.62 -14.07 3.33 -810.79 -2.70 -16.77 16 10 C 0.10 1.44 6.08 86.73 0.53 1.96 16 11 C -0.09 -1.55 3.00 -9.60 -0.03 -1.58 16 12 H 0.09 1.48 8.04 -2.39 -0.02 1.46 16 13 C -0.14 -1.77 9.14 71.98 0.66 -1.12 16 14 C -0.08 -1.90 2.47 -9.23 -0.02 -1.92 16 15 H 0.09 2.09 8.05 -2.39 -0.02 2.07 16 16 C -0.10 -3.07 4.85 30.60 0.15 -2.92 16 17 C 0.15 6.26 6.17 86.38 0.53 6.80 16 18 N -0.75 -39.77 5.60 -343.45 -1.92 -41.70 16 19 C -0.25 -14.68 9.99 84.03 0.84 -13.84 16 20 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 21 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 22 N -0.97 -60.57 13.06 21.65 0.28 -60.28 16 23 Si 0.97 47.49 29.55 68.60 2.03 49.52 16 24 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 26 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 27 C 0.11 3.11 5.90 87.03 0.51 3.62 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.09 1.00 7.14 -2.39 -0.02 0.98 16 30 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 0.52 6.92 -2.39 -0.02 0.51 16 32 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 33 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 0.86 7.80 -2.39 -0.02 0.84 16 37 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.06 0.76 8.12 -2.39 -0.02 0.74 16 39 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.06 1.92 7.97 -2.39 -0.02 1.90 16 42 H 0.07 2.24 8.13 -2.39 -0.02 2.23 16 43 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.01 0.43 7.77 -2.39 -0.02 0.41 16 45 H 0.37 20.84 7.67 -92.71 -0.71 20.12 16 46 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 47 H 0.05 1.74 8.04 -2.39 -0.02 1.72 16 48 H 0.05 1.66 7.92 -2.39 -0.02 1.64 16 Total: -1.00 -77.27 394.25 3.04 -74.23 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.20 Total: 25.54 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 6.34 Total: -2.56 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -4.34 Total: -118.75 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.05 Total: -19.78 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Atomic # 16 Polarization: -7.05 SS G_CDS: -1.14 Total: -8.19 kcal Total: -77.27 3.04 -74.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104087535.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.879 kcal (2) G-P(sol) polarization free energy of solvation -77.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds