Wall clock time and date at job start Tue Mar 31 2020 10:31:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08997 * 110.91623 * 2 1
4 4 C 1.55124 * 111.16385 * 236.07273 * 2 1 3
5 5 N 1.47420 * 104.94322 * 205.13232 * 4 2 1
6 6 C 1.34781 * 125.64729 * 203.96881 * 5 4 2
7 7 O 1.21275 * 120.00103 * 180.02562 * 6 5 4
8 8 C 1.50703 * 120.00047 * 0.03346 * 6 5 4
9 9 H 1.09007 * 112.82612 * 50.33817 * 8 6 5
10 10 C 1.53515 * 113.58823 * 181.44441 * 8 6 5
11 11 C 1.51613 * 87.24279 * 114.59488 * 10 8 6
12 12 C 1.38378 * 147.52691 * 179.97438 * 11 10 8
13 13 C 1.38092 * 120.32685 * 180.02562 * 12 11 10
14 14 C 1.38250 * 119.95593 * 359.97438 * 13 12 11
15 15 C 1.38098 * 119.95253 * 359.97438 * 14 13 12
16 16 C 1.38249 * 120.41010 * 0.07617 * 15 14 13
17 17 C 1.47023 * 108.70754 * 24.00159 * 5 4 2
18 18 C 1.54325 * 107.26642 * 358.93958 * 17 5 4
19 19 H 1.08999 * 110.71804 * 96.34988 * 18 17 5
20 20 C 1.53001 * 110.71861 * 219.44563 * 18 17 5
21 21 N 1.46500 * 109.46941 * 291.15853 * 20 18 17
22 22 C 1.36943 * 119.99878 * 179.97438 * 21 20 18
23 23 H 1.07996 * 119.99698 * 0.02562 * 22 21 20
24 24 C 1.38809 * 119.99902 * 179.97438 * 22 21 20
25 25 N 1.31620 * 120.00319 * 0.02562 * 24 22 21
26 26 Si 1.86798 * 120.00011 * 180.02562 * 24 22 21
27 27 H 1.48506 * 109.47297 * 59.99967 * 26 24 22
28 28 H 1.48503 * 109.47261 * 300.00148 * 26 24 22
29 29 H 1.48500 * 109.47454 * 180.02562 * 26 24 22
30 30 H 1.09002 * 109.47002 * 296.09892 * 1 2 3
31 31 H 1.08993 * 109.47233 * 56.09875 * 1 2 3
32 32 H 1.09004 * 109.47239 * 176.10107 * 1 2 3
33 33 H 1.08995 * 110.41795 * 86.19783 * 4 2 1
34 34 H 1.09009 * 110.30059 * 323.99714 * 4 2 1
35 35 H 1.08997 * 113.59209 * 229.18287 * 10 8 6
36 36 H 1.09004 * 113.58833 * 359.92776 * 10 8 6
37 37 H 1.07996 * 119.83478 * 0.04024 * 12 11 10
38 38 H 1.07995 * 120.01930 * 180.02562 * 13 12 11
39 39 H 1.07994 * 120.02399 * 180.02562 * 14 13 12
40 40 H 1.08000 * 119.83458 * 180.02562 * 15 14 13
41 41 H 1.08997 * 109.87872 * 239.52880 * 17 5 4
42 42 H 1.08994 * 110.01052 * 118.43324 * 17 5 4
43 43 H 1.09000 * 109.46906 * 171.16320 * 20 18 17
44 44 H 1.08992 * 109.47614 * 51.16053 * 20 18 17
45 45 H 0.97000 * 120.00415 * 359.97438 * 21 20 18
46 46 H 0.97001 * 119.99542 * 359.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9191 1.0181 0.0000
4 6 2.0900 -0.8074 -1.2003
5 7 3.4298 -1.2474 -0.7705
6 6 4.4511 -1.5689 -1.5891
7 8 5.5143 -1.9200 -1.1232
8 6 4.2720 -1.4919 -3.0835
9 1 3.8556 -0.5392 -3.4110
10 6 5.5152 -1.9232 -3.8742
11 6 4.6934 -3.0888 -4.3888
12 6 4.6435 -4.2226 -5.1806
13 6 3.4825 -4.9657 -5.2619
14 6 2.3632 -4.5777 -4.5493
15 6 2.4079 -3.4476 -3.7568
16 6 3.5664 -2.6981 -3.6714
17 6 3.4672 -1.2781 0.6989
18 6 2.0862 -0.8079 1.2022
19 1 1.4452 -1.6613 1.4229
20 6 2.2351 0.0877 2.4337
21 7 2.7031 -0.7142 3.5669
22 6 2.9107 -0.1231 4.7846
23 1 2.7291 0.9341 4.9096
24 6 3.3537 -0.8831 5.8585
25 7 3.5745 -2.1716 5.7063
26 14 3.6363 -0.0769 7.5197
27 1 2.3653 0.5203 8.0028
28 1 4.6635 0.9871 7.3853
29 1 4.1053 -1.0970 8.4916
30 1 -0.3633 0.4521 0.9229
31 1 -0.3633 0.5732 -0.8529
32 1 -0.3634 -1.0253 -0.0699
33 1 2.1642 -0.1733 -2.0837
34 1 1.4553 -1.6696 -1.4053
35 1 5.8044 -1.2164 -4.6520
36 1 6.3516 -2.2228 -3.2427
37 1 5.5170 -4.5278 -5.7376
38 1 3.4492 -5.8500 -5.8811
39 1 1.4547 -5.1583 -4.6117
40 1 1.5325 -3.1464 -3.2006
41 1 4.2434 -0.6056 1.0640
42 1 3.6626 -2.2927 1.0459
43 1 1.2707 0.5332 2.6777
44 1 2.9572 0.8767 2.2242
45 1 2.8658 -1.6639 3.4548
46 1 3.4274 -2.5903 4.8437
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001106604488.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:31:14
Heat of formation + Delta-G solvation = 36.716141 kcal
Electronic energy + Delta-G solvation = -25855.599431 eV
Core-core repulsion = 22325.301983 eV
Total energy + Delta-G solvation = -3530.297448 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.19176 -39.61341 -37.91525 -35.37530 -34.92769 -33.02697 -31.47599 -31.07603
-29.21680 -27.86120 -26.56634 -25.98935 -24.45842 -23.12789 -22.24330 -21.42604
-20.74433 -19.97044 -19.03882 -17.53338 -17.20426 -16.98712 -16.28928 -15.58181
-15.51632 -14.84518 -14.63426 -14.31579 -14.15772 -13.78788 -13.61990 -13.53357
-13.28057 -13.01001 -12.90072 -12.73002 -12.56663 -12.29700 -12.26963 -12.01252
-11.95799 -11.54031 -11.24175 -10.87445 -10.76865 -10.73239 -10.63594 -10.51825
-10.36727 -10.00553 -9.95099 -9.14836 -9.09759 -8.87776 -8.79841 -8.61440
-7.00008 -6.08585 -3.08778 0.99849 1.12895 2.51905 2.91354 3.49191
3.52960 3.56990 3.74462 3.88152 4.09750 4.17449 4.35690 4.42444
4.62817 4.75829 4.78137 4.81058 4.85827 4.94371 5.22553 5.29183
5.31054 5.36944 5.39283 5.42305 5.44126 5.59233 5.61741 5.65219
5.71475 5.73486 5.84216 5.90044 5.92412 6.03264 6.11174 6.13609
6.20230 6.22275 6.31051 6.33095 6.44076 6.61571 6.69895 6.74240
7.50055 7.81380 8.12076 8.77442 9.23882 10.10308 10.24604 11.39884
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.019530 B = 0.002842 C = 0.002702
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1433.367041 B = 9849.316371 C =10358.519442
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.098 4.098
3 H 0.087 0.913
4 C 0.105 3.895
5 N -0.612 5.612
6 C 0.542 3.458
7 O -0.532 6.532
8 C -0.063 4.063
9 H 0.119 0.881
10 C -0.057 4.057
11 C -0.118 4.118
12 C -0.097 4.097
13 C -0.113 4.113
14 C -0.121 4.121
15 C -0.085 4.085
16 C -0.123 4.123
17 C 0.116 3.884
18 C -0.102 4.102
19 H 0.084 0.916
20 C 0.171 3.829
21 N -0.744 5.744
22 C -0.333 4.333
23 H 0.064 0.936
24 C -0.045 4.045
25 N -0.943 5.943
26 Si 1.080 2.920
27 H -0.295 1.295
28 H -0.295 1.295
29 H -0.285 1.285
30 H 0.066 0.934
31 H 0.056 0.944
32 H 0.057 0.943
33 H 0.074 0.926
34 H 0.069 0.931
35 H 0.097 0.903
36 H 0.110 0.890
37 H 0.120 0.880
38 H 0.127 0.873
39 H 0.127 0.873
40 H 0.118 0.882
41 H 0.076 0.924
42 H 0.068 0.932
43 H 0.025 0.975
44 H 0.022 0.978
45 H 0.367 0.633
46 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.787 0.328 -25.752 26.195
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.118 4.118
3 H 0.106 0.894
4 C -0.018 4.018
5 N -0.345 5.345
6 C 0.329 3.671
7 O -0.408 6.408
8 C -0.084 4.084
9 H 0.137 0.863
10 C -0.094 4.094
11 C -0.118 4.118
12 C -0.115 4.115
13 C -0.131 4.131
14 C -0.139 4.139
15 C -0.103 4.103
16 C -0.123 4.123
17 C -0.006 4.006
18 C -0.121 4.121
19 H 0.103 0.897
20 C 0.043 3.957
21 N -0.390 5.390
22 C -0.464 4.464
23 H 0.082 0.918
24 C -0.242 4.242
25 N -0.588 5.588
26 Si 0.911 3.089
27 H -0.223 1.223
28 H -0.223 1.223
29 H -0.210 1.210
30 H 0.085 0.915
31 H 0.075 0.925
32 H 0.076 0.924
33 H 0.092 0.908
34 H 0.087 0.913
35 H 0.116 0.884
36 H 0.128 0.872
37 H 0.138 0.862
38 H 0.145 0.855
39 H 0.145 0.855
40 H 0.136 0.864
41 H 0.094 0.906
42 H 0.086 0.914
43 H 0.043 0.957
44 H 0.039 0.961
45 H 0.200 0.800
46 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -3.704 0.071 -23.928 24.213
hybrid contribution -0.643 -0.016 -1.632 1.754
sum -4.347 0.055 -25.561 25.928
Atomic orbital electron populations
1.21688 0.93546 1.02101 1.02326 1.22392 0.96283 0.99493 0.93622
0.89445 1.22476 0.83418 0.98171 0.97782 1.48473 1.12223 1.66289
1.07558 1.19643 0.82916 0.77182 0.87349 1.90726 1.26121 1.47047
1.76934 1.21504 0.96793 0.97945 0.92165 0.86323 1.21832 0.96692
0.93160 0.97757 1.22294 0.97130 0.95757 0.96626 1.20304 0.98284
0.93965 0.98989 1.21031 0.92813 0.99555 0.99663 1.20993 0.98845
0.96600 0.97421 1.20307 0.96774 0.94537 0.98707 1.21727 0.94805
0.96897 0.98894 1.22053 0.98406 1.02229 0.77889 1.22544 0.95018
0.99251 0.95284 0.89728 1.20564 0.96993 0.92666 0.85466 1.42373
1.81530 1.07757 1.07312 1.20004 1.42878 0.94748 0.88772 0.91781
1.25785 0.99611 0.96199 1.02654 1.70883 1.51784 1.10088 1.26038
0.83241 0.75867 0.74451 0.75334 1.22274 1.22262 1.21015 0.91531
0.92526 0.92423 0.90802 0.91327 0.88439 0.87155 0.86235 0.85546
0.85476 0.86367 0.90578 0.91404 0.95714 0.96061 0.79990 0.93399
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.34 9.32 37.16 0.35 -0.99 16
2 C -0.10 -1.13 3.10 -88.36 -0.27 -1.40 16
3 H 0.09 1.01 8.05 -51.93 -0.42 0.59 16
4 C 0.10 1.11 6.17 -2.42 -0.01 1.09 16
5 N -0.61 -8.75 3.33 -170.39 -0.57 -9.31 16
6 C 0.54 8.19 7.38 -10.98 -0.08 8.11 16
7 O -0.53 -10.23 16.03 5.56 0.09 -10.14 16
8 C -0.06 -0.70 3.46 -92.23 -0.32 -1.02 16
9 H 0.12 1.00 7.54 -51.92 -0.39 0.61 16
10 C -0.06 -0.59 7.77 -27.18 -0.21 -0.80 16
11 C -0.12 -1.30 7.49 -103.79 -0.78 -2.08 16
12 C -0.10 -0.94 10.03 -39.58 -0.40 -1.34 16
13 C -0.11 -0.98 10.04 -39.63 -0.40 -1.38 16
14 C -0.12 -1.08 10.04 -39.63 -0.40 -1.48 16
15 C -0.09 -0.86 10.02 -39.63 -0.40 -1.26 16
16 C -0.12 -1.38 6.99 -103.83 -0.73 -2.10 16
17 C 0.12 1.97 6.27 -3.06 -0.02 1.95 16
18 C -0.10 -1.58 2.45 -88.79 -0.22 -1.80 16
19 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16
20 C 0.17 3.38 5.59 -4.04 -0.02 3.35 16
21 N -0.74 -18.86 5.47 -59.91 -0.33 -19.19 16
22 C -0.33 -9.54 9.99 -15.06 -0.15 -9.69 16
23 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16
24 C -0.04 -1.33 5.50 -17.43 -0.10 -1.42 16
25 N -0.94 -29.72 13.70 55.49 0.76 -28.96 16
26 Si 1.08 26.33 29.92 -169.99 -5.09 21.25 16
27 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16
28 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16
29 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16
30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16
31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
32 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16
33 H 0.07 0.62 7.28 -51.93 -0.38 0.24 16
34 H 0.07 0.67 7.71 -51.92 -0.40 0.27 16
35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16
36 H 0.11 1.33 7.04 -51.93 -0.37 0.96 16
37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16
38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16
39 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16
40 H 0.12 1.02 7.78 -52.49 -0.41 0.61 16
41 H 0.08 1.47 7.73 -51.93 -0.40 1.07 16
42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16
44 H 0.02 0.44 8.00 -51.93 -0.42 0.02 16
45 H 0.37 9.56 6.43 -40.82 -0.26 9.30 16
46 H 0.25 7.93 6.77 -40.82 -0.28 7.65 16
LS Contribution 374.53 15.07 5.64 5.64
Total: -1.00 -35.20 374.53 -10.78 -45.99
By element:
Atomic # 1 Polarization: 14.13 SS G_CDS: -7.14 Total: 6.99 kcal
Atomic # 6 Polarization: -8.10 SS G_CDS: -4.15 Total: -12.26 kcal
Atomic # 7 Polarization: -57.33 SS G_CDS: -0.13 Total: -57.47 kcal
Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal
Atomic # 14 Polarization: 26.33 SS G_CDS: -5.09 Total: 21.25 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -35.20 -10.78 -45.99 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001106604488.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.702 kcal
(2) G-P(sol) polarization free energy of solvation -35.203 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.499 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.783 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.986 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.716 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds