Wall clock time and date at job start Tue Mar 31 2020 10:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.91623 * 2 1 4 4 C 1.55124 * 111.16385 * 236.07273 * 2 1 3 5 5 N 1.47420 * 104.94322 * 205.13232 * 4 2 1 6 6 C 1.34781 * 125.64729 * 203.96881 * 5 4 2 7 7 O 1.21275 * 120.00103 * 180.02562 * 6 5 4 8 8 C 1.50703 * 120.00047 * 0.03346 * 6 5 4 9 9 H 1.09007 * 112.82612 * 50.33817 * 8 6 5 10 10 C 1.53515 * 113.58823 * 181.44441 * 8 6 5 11 11 C 1.51613 * 87.24279 * 114.59488 * 10 8 6 12 12 C 1.38378 * 147.52691 * 179.97438 * 11 10 8 13 13 C 1.38092 * 120.32685 * 180.02562 * 12 11 10 14 14 C 1.38250 * 119.95593 * 359.97438 * 13 12 11 15 15 C 1.38098 * 119.95253 * 359.97438 * 14 13 12 16 16 C 1.38249 * 120.41010 * 0.07617 * 15 14 13 17 17 C 1.47023 * 108.70754 * 24.00159 * 5 4 2 18 18 C 1.54325 * 107.26642 * 358.93958 * 17 5 4 19 19 H 1.08999 * 110.71804 * 96.34988 * 18 17 5 20 20 C 1.53001 * 110.71861 * 219.44563 * 18 17 5 21 21 N 1.46500 * 109.46941 * 291.15853 * 20 18 17 22 22 C 1.36943 * 119.99878 * 179.97438 * 21 20 18 23 23 H 1.07996 * 119.99698 * 0.02562 * 22 21 20 24 24 C 1.38809 * 119.99902 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00319 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00011 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47297 * 59.99967 * 26 24 22 28 28 H 1.48503 * 109.47261 * 300.00148 * 26 24 22 29 29 H 1.48500 * 109.47454 * 180.02562 * 26 24 22 30 30 H 1.09002 * 109.47002 * 296.09892 * 1 2 3 31 31 H 1.08993 * 109.47233 * 56.09875 * 1 2 3 32 32 H 1.09004 * 109.47239 * 176.10107 * 1 2 3 33 33 H 1.08995 * 110.41795 * 86.19783 * 4 2 1 34 34 H 1.09009 * 110.30059 * 323.99714 * 4 2 1 35 35 H 1.08997 * 113.59209 * 229.18287 * 10 8 6 36 36 H 1.09004 * 113.58833 * 359.92776 * 10 8 6 37 37 H 1.07996 * 119.83478 * 0.04024 * 12 11 10 38 38 H 1.07995 * 120.01930 * 180.02562 * 13 12 11 39 39 H 1.07994 * 120.02399 * 180.02562 * 14 13 12 40 40 H 1.08000 * 119.83458 * 180.02562 * 15 14 13 41 41 H 1.08997 * 109.87872 * 239.52880 * 17 5 4 42 42 H 1.08994 * 110.01052 * 118.43324 * 17 5 4 43 43 H 1.09000 * 109.46906 * 171.16320 * 20 18 17 44 44 H 1.08992 * 109.47614 * 51.16053 * 20 18 17 45 45 H 0.97000 * 120.00415 * 359.97438 * 21 20 18 46 46 H 0.97001 * 119.99542 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0900 -0.8074 -1.2003 5 7 3.4298 -1.2474 -0.7705 6 6 4.4511 -1.5689 -1.5891 7 8 5.5143 -1.9200 -1.1232 8 6 4.2720 -1.4919 -3.0835 9 1 3.8556 -0.5392 -3.4110 10 6 5.5152 -1.9232 -3.8742 11 6 4.6934 -3.0888 -4.3888 12 6 4.6435 -4.2226 -5.1806 13 6 3.4825 -4.9657 -5.2619 14 6 2.3632 -4.5777 -4.5493 15 6 2.4079 -3.4476 -3.7568 16 6 3.5664 -2.6981 -3.6714 17 6 3.4672 -1.2781 0.6989 18 6 2.0862 -0.8079 1.2022 19 1 1.4452 -1.6613 1.4229 20 6 2.2351 0.0877 2.4337 21 7 2.7031 -0.7142 3.5669 22 6 2.9107 -0.1231 4.7846 23 1 2.7291 0.9341 4.9096 24 6 3.3537 -0.8831 5.8585 25 7 3.5745 -2.1716 5.7063 26 14 3.6363 -0.0769 7.5197 27 1 2.3653 0.5203 8.0028 28 1 4.6635 0.9871 7.3853 29 1 4.1053 -1.0970 8.4916 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5732 -0.8529 32 1 -0.3634 -1.0253 -0.0699 33 1 2.1642 -0.1733 -2.0837 34 1 1.4553 -1.6696 -1.4053 35 1 5.8044 -1.2164 -4.6520 36 1 6.3516 -2.2228 -3.2427 37 1 5.5170 -4.5278 -5.7376 38 1 3.4492 -5.8500 -5.8811 39 1 1.4547 -5.1583 -4.6117 40 1 1.5325 -3.1464 -3.2006 41 1 4.2434 -0.6056 1.0640 42 1 3.6626 -2.2927 1.0459 43 1 1.2707 0.5332 2.6777 44 1 2.9572 0.8767 2.2242 45 1 2.8658 -1.6639 3.4548 46 1 3.4274 -2.5903 4.8437 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106604488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:14 Heat of formation + Delta-G solvation = 36.716141 kcal Electronic energy + Delta-G solvation = -25855.599431 eV Core-core repulsion = 22325.301983 eV Total energy + Delta-G solvation = -3530.297448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.19176 -39.61341 -37.91525 -35.37530 -34.92769 -33.02697 -31.47599 -31.07603 -29.21680 -27.86120 -26.56634 -25.98935 -24.45842 -23.12789 -22.24330 -21.42604 -20.74433 -19.97044 -19.03882 -17.53338 -17.20426 -16.98712 -16.28928 -15.58181 -15.51632 -14.84518 -14.63426 -14.31579 -14.15772 -13.78788 -13.61990 -13.53357 -13.28057 -13.01001 -12.90072 -12.73002 -12.56663 -12.29700 -12.26963 -12.01252 -11.95799 -11.54031 -11.24175 -10.87445 -10.76865 -10.73239 -10.63594 -10.51825 -10.36727 -10.00553 -9.95099 -9.14836 -9.09759 -8.87776 -8.79841 -8.61440 -7.00008 -6.08585 -3.08778 0.99849 1.12895 2.51905 2.91354 3.49191 3.52960 3.56990 3.74462 3.88152 4.09750 4.17449 4.35690 4.42444 4.62817 4.75829 4.78137 4.81058 4.85827 4.94371 5.22553 5.29183 5.31054 5.36944 5.39283 5.42305 5.44126 5.59233 5.61741 5.65219 5.71475 5.73486 5.84216 5.90044 5.92412 6.03264 6.11174 6.13609 6.20230 6.22275 6.31051 6.33095 6.44076 6.61571 6.69895 6.74240 7.50055 7.81380 8.12076 8.77442 9.23882 10.10308 10.24604 11.39884 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019530 B = 0.002842 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.367041 B = 9849.316371 C =10358.519442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.087 0.913 4 C 0.105 3.895 5 N -0.612 5.612 6 C 0.542 3.458 7 O -0.532 6.532 8 C -0.063 4.063 9 H 0.119 0.881 10 C -0.057 4.057 11 C -0.118 4.118 12 C -0.097 4.097 13 C -0.113 4.113 14 C -0.121 4.121 15 C -0.085 4.085 16 C -0.123 4.123 17 C 0.116 3.884 18 C -0.102 4.102 19 H 0.084 0.916 20 C 0.171 3.829 21 N -0.744 5.744 22 C -0.333 4.333 23 H 0.064 0.936 24 C -0.045 4.045 25 N -0.943 5.943 26 Si 1.080 2.920 27 H -0.295 1.295 28 H -0.295 1.295 29 H -0.285 1.285 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.118 0.882 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.025 0.975 44 H 0.022 0.978 45 H 0.367 0.633 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.787 0.328 -25.752 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.018 4.018 5 N -0.345 5.345 6 C 0.329 3.671 7 O -0.408 6.408 8 C -0.084 4.084 9 H 0.137 0.863 10 C -0.094 4.094 11 C -0.118 4.118 12 C -0.115 4.115 13 C -0.131 4.131 14 C -0.139 4.139 15 C -0.103 4.103 16 C -0.123 4.123 17 C -0.006 4.006 18 C -0.121 4.121 19 H 0.103 0.897 20 C 0.043 3.957 21 N -0.390 5.390 22 C -0.464 4.464 23 H 0.082 0.918 24 C -0.242 4.242 25 N -0.588 5.588 26 Si 0.911 3.089 27 H -0.223 1.223 28 H -0.223 1.223 29 H -0.210 1.210 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.128 0.872 37 H 0.138 0.862 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.136 0.864 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.043 0.957 44 H 0.039 0.961 45 H 0.200 0.800 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.704 0.071 -23.928 24.213 hybrid contribution -0.643 -0.016 -1.632 1.754 sum -4.347 0.055 -25.561 25.928 Atomic orbital electron populations 1.21688 0.93546 1.02101 1.02326 1.22392 0.96283 0.99493 0.93622 0.89445 1.22476 0.83418 0.98171 0.97782 1.48473 1.12223 1.66289 1.07558 1.19643 0.82916 0.77182 0.87349 1.90726 1.26121 1.47047 1.76934 1.21504 0.96793 0.97945 0.92165 0.86323 1.21832 0.96692 0.93160 0.97757 1.22294 0.97130 0.95757 0.96626 1.20304 0.98284 0.93965 0.98989 1.21031 0.92813 0.99555 0.99663 1.20993 0.98845 0.96600 0.97421 1.20307 0.96774 0.94537 0.98707 1.21727 0.94805 0.96897 0.98894 1.22053 0.98406 1.02229 0.77889 1.22544 0.95018 0.99251 0.95284 0.89728 1.20564 0.96993 0.92666 0.85466 1.42373 1.81530 1.07757 1.07312 1.20004 1.42878 0.94748 0.88772 0.91781 1.25785 0.99611 0.96199 1.02654 1.70883 1.51784 1.10088 1.26038 0.83241 0.75867 0.74451 0.75334 1.22274 1.22262 1.21015 0.91531 0.92526 0.92423 0.90802 0.91327 0.88439 0.87155 0.86235 0.85546 0.85476 0.86367 0.90578 0.91404 0.95714 0.96061 0.79990 0.93399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.32 37.16 0.35 -0.99 16 2 C -0.10 -1.13 3.10 -88.36 -0.27 -1.40 16 3 H 0.09 1.01 8.05 -51.93 -0.42 0.59 16 4 C 0.10 1.11 6.17 -2.42 -0.01 1.09 16 5 N -0.61 -8.75 3.33 -170.39 -0.57 -9.31 16 6 C 0.54 8.19 7.38 -10.98 -0.08 8.11 16 7 O -0.53 -10.23 16.03 5.56 0.09 -10.14 16 8 C -0.06 -0.70 3.46 -92.23 -0.32 -1.02 16 9 H 0.12 1.00 7.54 -51.92 -0.39 0.61 16 10 C -0.06 -0.59 7.77 -27.18 -0.21 -0.80 16 11 C -0.12 -1.30 7.49 -103.79 -0.78 -2.08 16 12 C -0.10 -0.94 10.03 -39.58 -0.40 -1.34 16 13 C -0.11 -0.98 10.04 -39.63 -0.40 -1.38 16 14 C -0.12 -1.08 10.04 -39.63 -0.40 -1.48 16 15 C -0.09 -0.86 10.02 -39.63 -0.40 -1.26 16 16 C -0.12 -1.38 6.99 -103.83 -0.73 -2.10 16 17 C 0.12 1.97 6.27 -3.06 -0.02 1.95 16 18 C -0.10 -1.58 2.45 -88.79 -0.22 -1.80 16 19 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 20 C 0.17 3.38 5.59 -4.04 -0.02 3.35 16 21 N -0.74 -18.86 5.47 -59.91 -0.33 -19.19 16 22 C -0.33 -9.54 9.99 -15.06 -0.15 -9.69 16 23 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.04 -1.33 5.50 -17.43 -0.10 -1.42 16 25 N -0.94 -29.72 13.70 55.49 0.76 -28.96 16 26 Si 1.08 26.33 29.92 -169.99 -5.09 21.25 16 27 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.07 0.62 7.28 -51.93 -0.38 0.24 16 34 H 0.07 0.67 7.71 -51.92 -0.40 0.27 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.11 1.33 7.04 -51.93 -0.37 0.96 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.12 1.02 7.78 -52.49 -0.41 0.61 16 41 H 0.08 1.47 7.73 -51.93 -0.40 1.07 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.02 0.44 8.00 -51.93 -0.42 0.02 16 45 H 0.37 9.56 6.43 -40.82 -0.26 9.30 16 46 H 0.25 7.93 6.77 -40.82 -0.28 7.65 16 LS Contribution 374.53 15.07 5.64 5.64 Total: -1.00 -35.20 374.53 -10.78 -45.99 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -7.14 Total: 6.99 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -4.15 Total: -12.26 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.13 Total: -57.47 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 26.33 SS G_CDS: -5.09 Total: 21.25 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.20 -10.78 -45.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106604488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.702 kcal (2) G-P(sol) polarization free energy of solvation -35.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds