Wall clock time and date at job start Tue Mar 31 2020 10:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.91623 * 2 1 4 4 C 1.55124 * 111.16385 * 236.07273 * 2 1 3 5 5 N 1.47420 * 104.94322 * 205.13232 * 4 2 1 6 6 C 1.34781 * 125.64729 * 203.96881 * 5 4 2 7 7 O 1.21275 * 120.00103 * 180.02562 * 6 5 4 8 8 C 1.50703 * 120.00047 * 0.03346 * 6 5 4 9 9 H 1.09007 * 112.82612 * 50.33817 * 8 6 5 10 10 C 1.53515 * 113.58823 * 181.44441 * 8 6 5 11 11 C 1.51613 * 87.24279 * 114.59488 * 10 8 6 12 12 C 1.38378 * 147.52691 * 179.97438 * 11 10 8 13 13 C 1.38092 * 120.32685 * 180.02562 * 12 11 10 14 14 C 1.38250 * 119.95593 * 359.97438 * 13 12 11 15 15 C 1.38098 * 119.95253 * 359.97438 * 14 13 12 16 16 C 1.38249 * 120.41010 * 0.07617 * 15 14 13 17 17 C 1.47023 * 108.70754 * 24.00159 * 5 4 2 18 18 C 1.54325 * 107.26642 * 358.93958 * 17 5 4 19 19 H 1.08999 * 110.71804 * 96.34988 * 18 17 5 20 20 C 1.53001 * 110.71861 * 219.44563 * 18 17 5 21 21 N 1.46500 * 109.46941 * 291.15853 * 20 18 17 22 22 C 1.36943 * 119.99878 * 179.97438 * 21 20 18 23 23 H 1.07996 * 119.99698 * 0.02562 * 22 21 20 24 24 C 1.38809 * 119.99902 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00319 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00011 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47297 * 59.99967 * 26 24 22 28 28 H 1.48503 * 109.47261 * 300.00148 * 26 24 22 29 29 H 1.48500 * 109.47454 * 180.02562 * 26 24 22 30 30 H 1.09002 * 109.47002 * 296.09892 * 1 2 3 31 31 H 1.08993 * 109.47233 * 56.09875 * 1 2 3 32 32 H 1.09004 * 109.47239 * 176.10107 * 1 2 3 33 33 H 1.08995 * 110.41795 * 86.19783 * 4 2 1 34 34 H 1.09009 * 110.30059 * 323.99714 * 4 2 1 35 35 H 1.08997 * 113.59209 * 229.18287 * 10 8 6 36 36 H 1.09004 * 113.58833 * 359.92776 * 10 8 6 37 37 H 1.07996 * 119.83478 * 0.04024 * 12 11 10 38 38 H 1.07995 * 120.01930 * 180.02562 * 13 12 11 39 39 H 1.07994 * 120.02399 * 180.02562 * 14 13 12 40 40 H 1.08000 * 119.83458 * 180.02562 * 15 14 13 41 41 H 1.08997 * 109.87872 * 239.52880 * 17 5 4 42 42 H 1.08994 * 110.01052 * 118.43324 * 17 5 4 43 43 H 1.09000 * 109.46906 * 171.16320 * 20 18 17 44 44 H 1.08992 * 109.47614 * 51.16053 * 20 18 17 45 45 H 0.97000 * 120.00415 * 359.97438 * 21 20 18 46 46 H 0.97001 * 119.99542 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0900 -0.8074 -1.2003 5 7 3.4298 -1.2474 -0.7705 6 6 4.4511 -1.5689 -1.5891 7 8 5.5143 -1.9200 -1.1232 8 6 4.2720 -1.4919 -3.0835 9 1 3.8556 -0.5392 -3.4110 10 6 5.5152 -1.9232 -3.8742 11 6 4.6934 -3.0888 -4.3888 12 6 4.6435 -4.2226 -5.1806 13 6 3.4825 -4.9657 -5.2619 14 6 2.3632 -4.5777 -4.5493 15 6 2.4079 -3.4476 -3.7568 16 6 3.5664 -2.6981 -3.6714 17 6 3.4672 -1.2781 0.6989 18 6 2.0862 -0.8079 1.2022 19 1 1.4452 -1.6613 1.4229 20 6 2.2351 0.0877 2.4337 21 7 2.7031 -0.7142 3.5669 22 6 2.9107 -0.1231 4.7846 23 1 2.7291 0.9341 4.9096 24 6 3.3537 -0.8831 5.8585 25 7 3.5745 -2.1716 5.7063 26 14 3.6363 -0.0769 7.5197 27 1 2.3653 0.5203 8.0028 28 1 4.6635 0.9871 7.3853 29 1 4.1053 -1.0970 8.4916 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5732 -0.8529 32 1 -0.3634 -1.0253 -0.0699 33 1 2.1642 -0.1733 -2.0837 34 1 1.4553 -1.6696 -1.4053 35 1 5.8044 -1.2164 -4.6520 36 1 6.3516 -2.2228 -3.2427 37 1 5.5170 -4.5278 -5.7376 38 1 3.4492 -5.8500 -5.8811 39 1 1.4547 -5.1583 -4.6117 40 1 1.5325 -3.1464 -3.2006 41 1 4.2434 -0.6056 1.0640 42 1 3.6626 -2.2927 1.0459 43 1 1.2707 0.5332 2.6777 44 1 2.9572 0.8767 2.2242 45 1 2.8658 -1.6639 3.4548 46 1 3.4274 -2.5903 4.8437 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106604488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:13 Heat of formation + Delta-G solvation = 15.613109 kcal Electronic energy + Delta-G solvation = -25856.514528 eV Core-core repulsion = 22325.301983 eV Total energy + Delta-G solvation = -3531.212544 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.11497 -40.65094 -39.11410 -36.81296 -36.17835 -34.39764 -33.06432 -31.82402 -30.75122 -28.76346 -27.53518 -27.21870 -25.81781 -24.90547 -23.16469 -22.56846 -21.57090 -21.21509 -20.08867 -19.35229 -18.46393 -17.94865 -17.38424 -16.76833 -16.55212 -16.17964 -15.86479 -15.61245 -15.41031 -15.32655 -15.15097 -14.55269 -14.21771 -14.05756 -13.90064 -13.74608 -13.57874 -13.37557 -13.28830 -13.00874 -12.87266 -12.86040 -12.61488 -12.49063 -12.04744 -11.94329 -11.92546 -11.79740 -11.61244 -11.52179 -11.19688 -11.11766 -10.95680 -9.84369 -9.82136 -9.55575 -9.15417 -8.43448 -5.37532 0.26584 0.41503 1.37935 1.56146 1.66852 1.79534 1.83117 2.69233 2.76821 3.07165 3.23898 3.35252 3.36975 3.37519 3.43095 3.60855 3.72829 3.98109 4.08639 4.11560 4.18356 4.21948 4.30778 4.39988 4.45618 4.56354 4.60023 4.66635 4.67938 4.74022 4.76854 4.82073 4.89532 4.91392 4.94061 5.06970 5.09331 5.12224 5.16823 5.28536 5.43520 5.45590 5.54114 5.55117 5.69712 6.01995 6.37524 6.45059 6.94621 7.05227 7.95388 8.06373 9.08366 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019530 B = 0.002842 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.367041 B = 9849.316371 C =10358.519442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.091 0.909 4 C 0.104 3.896 5 N -0.610 5.610 6 C 0.534 3.466 7 O -0.586 6.586 8 C -0.053 4.053 9 H 0.152 0.848 10 C -0.057 4.057 11 C -0.139 4.139 12 C -0.110 4.110 13 C -0.114 4.114 14 C -0.126 4.126 15 C -0.096 4.096 16 C -0.140 4.140 17 C 0.122 3.878 18 C -0.091 4.091 19 H 0.083 0.917 20 C 0.171 3.829 21 N -0.759 5.759 22 C -0.336 4.336 23 H 0.069 0.931 24 C -0.107 4.107 25 N -0.975 5.975 26 Si 1.129 2.871 27 H -0.273 1.273 28 H -0.279 1.279 29 H -0.293 1.293 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.084 0.916 37 H 0.134 0.866 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.133 0.867 41 H 0.043 0.957 42 H 0.038 0.962 43 H 0.034 0.966 44 H 0.015 0.985 45 H 0.359 0.641 46 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.903 1.388 -28.078 28.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 H 0.109 0.891 4 C -0.017 4.017 5 N -0.342 5.342 6 C 0.324 3.676 7 O -0.467 6.467 8 C -0.074 4.074 9 H 0.170 0.830 10 C -0.094 4.094 11 C -0.139 4.139 12 C -0.128 4.128 13 C -0.132 4.132 14 C -0.143 4.143 15 C -0.114 4.114 16 C -0.141 4.141 17 C -0.001 4.001 18 C -0.110 4.110 19 H 0.101 0.899 20 C 0.045 3.955 21 N -0.403 5.403 22 C -0.467 4.467 23 H 0.087 0.913 24 C -0.297 4.297 25 N -0.623 5.623 26 Si 0.953 3.047 27 H -0.198 1.198 28 H -0.205 1.205 29 H -0.219 1.219 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.128 0.872 34 H 0.104 0.896 35 H 0.144 0.856 36 H 0.103 0.897 37 H 0.152 0.848 38 H 0.170 0.830 39 H 0.169 0.831 40 H 0.151 0.849 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.033 0.967 45 H 0.191 0.809 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.878 1.177 -26.317 26.991 hybrid contribution 0.011 -0.369 -0.982 1.049 sum -5.868 0.808 -27.299 27.934 Atomic orbital electron populations 1.21677 0.91446 1.02981 1.03094 1.22403 0.97839 0.98983 0.91386 0.89073 1.22763 0.81257 0.99285 0.98399 1.48570 1.13791 1.65827 1.06054 1.20517 0.82073 0.75873 0.89181 1.90695 1.28353 1.49410 1.78224 1.21504 0.97606 0.99734 0.88520 0.83043 1.21841 0.95652 0.93931 0.97971 1.22498 0.97354 0.96553 0.97530 1.20623 0.99417 0.93716 0.99020 1.21416 0.92303 1.00024 0.99458 1.21373 0.99896 0.96343 0.96724 1.20602 0.96962 0.94779 0.99060 1.21799 0.95505 0.97290 0.99485 1.21743 0.98443 0.99642 0.80303 1.22382 0.94271 0.99142 0.95222 0.89890 1.20708 0.96570 0.92746 0.85513 1.42630 1.81749 1.07869 1.08089 1.20402 1.41268 0.95042 0.89976 0.91325 1.27297 0.99808 0.96069 1.06571 1.71000 1.54371 1.11442 1.25499 0.82624 0.77040 0.73843 0.71159 1.19849 1.20513 1.21942 0.92670 0.89527 0.91863 0.87215 0.89614 0.85554 0.89734 0.84781 0.82993 0.83073 0.84931 0.93857 0.94381 0.94777 0.96668 0.80946 0.94778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.32 71.98 0.67 -1.45 16 2 C -0.09 -1.79 3.10 -9.33 -0.03 -1.82 16 3 H 0.09 1.86 8.05 -2.39 -0.02 1.84 16 4 C 0.10 1.91 6.17 86.93 0.54 2.44 16 5 N -0.61 -17.31 3.33 -811.38 -2.70 -20.01 16 6 C 0.53 16.34 7.38 87.66 0.65 16.98 16 7 O -0.59 -23.95 16.03 -3.01 -0.05 -24.00 16 8 C -0.05 -1.10 3.46 -11.84 -0.04 -1.14 16 9 H 0.15 2.05 7.54 -2.38 -0.02 2.03 16 10 C -0.06 -1.15 7.77 30.30 0.24 -0.91 16 11 C -0.14 -2.92 7.49 -19.32 -0.14 -3.07 16 12 C -0.11 -1.96 10.03 22.27 0.22 -1.74 16 13 C -0.11 -1.72 10.04 22.24 0.22 -1.50 16 14 C -0.13 -1.92 10.04 22.24 0.22 -1.69 16 15 C -0.10 -1.72 10.02 22.24 0.22 -1.49 16 16 C -0.14 -2.91 6.99 -19.35 -0.14 -3.04 16 17 C 0.12 4.37 6.27 86.73 0.54 4.91 16 18 C -0.09 -2.83 2.45 -9.61 -0.02 -2.85 16 19 H 0.08 2.64 8.04 -2.39 -0.02 2.62 16 20 C 0.17 6.84 5.59 86.38 0.48 7.32 16 21 N -0.76 -39.66 5.47 -343.46 -1.88 -41.54 16 22 C -0.34 -19.49 9.99 84.03 0.84 -18.65 16 23 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 24 C -0.11 -6.39 5.50 84.86 0.47 -5.93 16 25 N -0.98 -63.35 13.70 21.65 0.30 -63.06 16 26 Si 1.13 53.27 29.92 68.60 2.05 55.33 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 28 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 29 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.95 8.08 -2.38 -0.02 0.93 16 33 H 0.11 1.32 7.28 -2.39 -0.02 1.30 16 34 H 0.09 1.35 7.71 -2.38 -0.02 1.33 16 35 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 2.15 7.04 -2.39 -0.02 2.13 16 37 H 0.13 1.87 8.06 -2.91 -0.02 1.84 16 38 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.13 1.87 7.78 -2.91 -0.02 1.85 16 41 H 0.04 1.81 7.73 -2.39 -0.02 1.79 16 42 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.02 0.64 8.00 -2.39 -0.02 0.62 16 45 H 0.36 19.67 6.43 -92.71 -0.60 19.08 16 46 H 0.24 15.76 6.77 -92.71 -0.63 15.14 16 Total: -1.00 -80.62 374.53 3.18 -77.44 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.52 Total: 29.48 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 4.94 Total: -13.63 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -4.28 Total: -124.62 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.05 Total: -24.00 kcal Atomic # 14 Polarization: 53.27 SS G_CDS: 2.05 Total: 55.33 kcal Total: -80.62 3.18 -77.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106604488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.054 kcal (2) G-P(sol) polarization free energy of solvation -80.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds