Wall clock time and date at job start Tue Mar 31 2020 10:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81400 * 102.99842 * 2 1 4 4 H 1.08995 * 109.47158 * 55.00335 * 3 2 1 5 5 C 1.53002 * 109.46907 * 294.99457 * 3 2 1 6 6 C 1.53003 * 109.46794 * 175.00149 * 3 2 1 7 7 C 1.50699 * 109.46840 * 295.00020 * 6 3 2 8 8 O 1.21279 * 120.00480 * 359.97438 * 7 6 3 9 9 N 1.34780 * 119.99994 * 180.02562 * 7 6 3 10 10 C 1.46497 * 120.00197 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47292 * 176.62897 * 10 9 7 12 12 N 1.46500 * 109.47017 * 54.62785 * 11 10 9 13 13 C 1.36934 * 120.00081 * 62.84144 * 12 11 10 14 14 H 1.08006 * 119.99766 * 354.25476 * 13 12 11 15 15 C 1.38805 * 120.00121 * 174.25428 * 13 12 11 16 16 N 1.31615 * 120.00477 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99958 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46842 * 90.00064 * 17 15 13 19 19 H 1.48501 * 109.47425 * 209.99829 * 17 15 13 20 20 H 1.48495 * 109.47322 * 330.00273 * 17 15 13 21 21 C 1.52999 * 109.46798 * 294.63092 * 11 10 9 22 22 C 1.53002 * 109.46798 * 179.97438 * 21 11 10 23 23 C 1.53001 * 109.47364 * 60.00187 * 22 21 11 24 24 C 1.53003 * 109.46539 * 299.99906 * 23 22 21 25 25 C 1.52999 * 109.47422 * 60.00315 * 24 23 22 26 26 H 1.09004 * 109.46937 * 60.00237 * 1 2 3 27 27 H 1.09000 * 109.47600 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47049 * 300.00137 * 1 2 3 29 29 H 1.09004 * 109.46961 * 180.02562 * 5 3 2 30 30 H 1.08990 * 109.47492 * 300.00349 * 5 3 2 31 31 H 1.09004 * 109.46765 * 60.00812 * 5 3 2 32 32 H 1.08995 * 109.47156 * 174.99654 * 6 3 2 33 33 H 1.08994 * 109.47305 * 54.99639 * 6 3 2 34 34 H 0.96998 * 119.99629 * 359.97438 * 9 7 6 35 35 H 1.08996 * 109.47356 * 296.63050 * 10 9 7 36 36 H 1.08997 * 109.47007 * 56.62631 * 10 9 7 37 37 H 0.96999 * 120.00157 * 242.84001 * 12 11 10 38 38 H 0.97001 * 120.00884 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.47211 * 299.99512 * 21 11 10 40 40 H 1.08996 * 109.47430 * 59.99705 * 21 11 10 41 41 H 1.09001 * 109.47322 * 299.99513 * 22 21 11 42 42 H 1.09001 * 109.47182 * 179.97438 * 22 21 11 43 43 H 1.09000 * 109.46852 * 180.02562 * 23 22 21 44 44 H 1.08998 * 109.46950 * 59.99455 * 23 22 21 45 45 H 1.09001 * 109.46840 * 299.99874 * 24 23 22 46 46 H 1.09006 * 109.47012 * 180.02562 * 24 23 22 47 47 H 1.08999 * 109.46726 * 180.02562 * 25 24 23 48 48 H 1.08997 * 109.47203 * 59.99235 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7429 2.4015 -1.3074 6 6 3.7370 1.9411 0.1257 7 6 4.1919 1.4269 1.4672 8 8 3.3840 0.9673 2.2462 9 7 5.4965 1.4787 1.8017 10 6 5.9387 0.9793 3.1060 11 6 7.4628 1.0757 3.1991 12 7 7.8831 2.4510 2.9193 13 6 7.4852 3.4696 3.7433 14 1 6.7873 3.2749 4.5443 15 6 7.9786 4.7524 3.5492 16 7 8.8294 4.9897 2.5734 17 14 7.4351 6.1422 4.6730 18 1 8.3582 6.2305 5.8330 19 1 7.4590 7.4236 3.9228 20 1 6.0563 5.8774 5.1566 21 6 8.0969 0.1306 2.1765 22 6 9.6211 0.2275 2.2692 23 6 10.0726 -0.1669 3.6768 24 6 9.4384 0.7782 4.6993 25 6 7.9143 0.6813 4.6068 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.9884 3.4635 -1.3076 30 1 2.2354 1.9149 -2.1491 31 1 0.6636 2.2778 -1.3970 32 1 3.9903 2.9975 0.0365 33 1 4.2339 1.3803 -0.6659 34 1 6.1426 1.8467 1.1788 35 1 5.4878 1.5790 3.8966 36 1 5.6328 -0.0606 3.2196 37 1 8.4433 2.6400 2.1503 38 1 9.1746 5.8860 2.4380 39 1 7.7843 -0.8926 2.3847 40 1 7.7756 0.4118 1.1737 41 1 9.9335 1.2507 2.0607 42 1 10.0729 -0.4462 1.5410 43 1 11.1584 -0.0975 3.7429 44 1 9.7602 -1.1902 3.8852 45 1 9.7508 1.8015 4.4908 46 1 9.7604 0.4976 5.7022 47 1 7.4626 1.3550 5.3349 48 1 7.6020 -0.3419 4.8151 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115489360.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:11 Heat of formation + Delta-G solvation = -50.497703 kcal Electronic energy + Delta-G solvation = -25467.341823 eV Core-core repulsion = 22068.706450 eV Total energy + Delta-G solvation = -3398.635373 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.51480 -38.40765 -34.70165 -34.18073 -33.21268 -31.17054 -30.20999 -29.33205 -28.61641 -27.72335 -25.01563 -23.77694 -22.30851 -21.90051 -20.41974 -19.74358 -18.30024 -17.17329 -16.71218 -16.55007 -15.55218 -15.23888 -14.92636 -14.46582 -14.23554 -14.00801 -13.91026 -13.69429 -13.56781 -13.41166 -13.04889 -12.76940 -12.75894 -12.42082 -12.04021 -11.82958 -11.79396 -11.65785 -11.52762 -11.36140 -11.23243 -11.06832 -10.88117 -10.75997 -10.51408 -10.16947 -10.02254 -9.78780 -9.75604 -9.61486 -9.33690 -9.26264 -8.86804 -8.32577 -7.39568 -6.99887 -5.80519 -3.08935 1.75052 2.63964 3.19568 3.40675 3.47643 3.48536 3.74879 4.56477 4.63947 4.83225 5.05433 5.10006 5.19401 5.22922 5.29338 5.31611 5.36632 5.44719 5.53130 5.58110 5.62326 5.63588 5.70553 5.77464 5.83565 5.86445 5.99734 6.01633 6.07909 6.15269 6.19999 6.25143 6.34211 6.48513 6.54949 6.63135 6.82706 6.84978 6.85876 7.02163 7.17408 7.22907 7.71815 8.16114 8.37860 8.81747 9.50337 10.03838 10.40594 11.41486 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.012408 B = 0.004155 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.085227 B = 6737.584663 C = 8153.767191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.239 6.239 3 C -0.041 4.041 4 H 0.093 0.907 5 C -0.147 4.147 6 C -0.125 4.125 7 C 0.503 3.497 8 O -0.537 6.537 9 N -0.702 5.702 10 C 0.118 3.882 11 C 0.191 3.809 12 N -0.710 5.710 13 C -0.227 4.227 14 H 0.068 0.932 15 C -0.009 4.009 16 N -0.932 5.932 17 Si 0.898 3.102 18 H -0.291 1.291 19 H -0.293 1.293 20 H -0.283 1.283 21 C -0.113 4.113 22 C -0.115 4.115 23 C -0.112 4.112 24 C -0.109 4.109 25 C -0.114 4.114 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.401 0.599 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.083 0.917 46 H 0.043 0.957 47 H 0.063 0.937 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.045 -9.211 -6.904 14.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.013 6.013 3 C -0.170 4.170 4 H 0.111 0.889 5 C -0.207 4.207 6 C -0.166 4.166 7 C 0.288 3.712 8 O -0.414 6.414 9 N -0.353 5.353 10 C -0.008 4.008 11 C 0.099 3.901 12 N -0.352 5.352 13 C -0.358 4.358 14 H 0.086 0.914 15 C -0.205 4.205 16 N -0.580 5.580 17 Si 0.730 3.270 18 H -0.218 1.218 19 H -0.220 1.220 20 H -0.209 1.209 21 C -0.151 4.151 22 C -0.153 4.153 23 C -0.150 4.150 24 C -0.147 4.147 25 C -0.154 4.154 26 H 0.090 0.910 27 H 0.115 0.885 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.115 0.885 34 H 0.237 0.763 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.219 0.781 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.102 0.898 46 H 0.062 0.938 47 H 0.082 0.918 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.995 -10.297 -6.200 14.436 hybrid contribution -0.626 2.255 0.198 2.348 sum -8.621 -8.042 -6.002 13.230 Atomic orbital electron populations 1.23361 0.95580 1.05956 1.04447 1.86897 1.05895 1.10774 1.97705 1.22852 0.98267 0.94667 1.01187 0.88907 1.22110 1.01207 1.01103 0.96241 1.21514 0.94039 1.03938 0.97140 1.20313 0.82810 0.79373 0.88696 1.90701 1.52882 1.45783 1.52084 1.45742 1.07735 1.62627 1.19174 1.21804 0.97034 0.97303 0.84694 1.19823 0.90132 0.86790 0.93369 1.42443 1.60870 0.99842 1.31998 1.19075 1.19991 0.87647 1.09117 0.91379 1.24646 0.99538 0.97478 0.98792 1.69639 1.35032 1.20690 1.32665 0.86324 0.78072 0.82380 0.80238 1.21834 1.21991 1.20927 1.21678 0.95694 0.98810 0.98893 1.21475 0.95444 1.02116 0.96257 1.21471 0.99185 0.98637 0.95696 1.21374 0.95282 1.01267 0.96779 1.21787 0.96215 0.99152 0.98268 0.91022 0.88549 0.90676 0.91475 0.91298 0.92482 0.87525 0.88537 0.76333 0.92085 0.93031 0.78095 0.93659 0.92320 0.92467 0.90740 0.93341 0.93077 0.93253 0.89848 0.93839 0.91835 0.93765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 10.45 101.05 1.06 -0.18 16 2 S -0.24 -3.22 20.24 -107.50 -2.18 -5.39 16 3 C -0.04 -0.50 2.44 -26.73 -0.07 -0.57 16 4 H 0.09 1.28 7.95 -51.93 -0.41 0.86 16 5 C -0.15 -1.37 9.10 37.16 0.34 -1.04 16 6 C -0.13 -1.63 5.17 -27.88 -0.14 -1.77 16 7 C 0.50 8.57 7.54 -10.98 -0.08 8.49 16 8 O -0.54 -10.78 14.79 5.56 0.08 -10.70 16 9 N -0.70 -12.02 5.09 -60.30 -0.31 -12.32 16 10 C 0.12 2.15 4.37 -4.04 -0.02 2.14 16 11 C 0.19 3.39 0.41 -131.82 -0.05 3.33 16 12 N -0.71 -15.19 3.40 -47.23 -0.16 -15.35 16 13 C -0.23 -5.66 8.70 -15.06 -0.13 -5.79 16 14 H 0.07 1.74 6.77 -52.48 -0.36 1.38 16 15 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 16 N -0.93 -26.00 13.07 55.49 0.73 -25.27 16 17 Si 0.90 21.71 29.55 -169.99 -5.02 16.69 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 C -0.11 -1.73 4.65 -26.73 -0.12 -1.86 16 22 C -0.12 -1.75 5.75 -26.73 -0.15 -1.91 16 23 C -0.11 -1.67 5.92 -26.73 -0.16 -1.83 16 24 C -0.11 -1.86 5.76 -26.73 -0.15 -2.02 16 25 C -0.11 -1.99 4.52 -26.73 -0.12 -2.11 16 26 H 0.07 0.59 7.14 -51.92 -0.37 0.22 16 27 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 28 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.48 6.92 -51.93 -0.36 0.12 16 32 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.40 6.63 7.39 -40.82 -0.30 6.33 16 35 H 0.06 1.27 7.50 -51.93 -0.39 0.88 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.38 8.84 6.63 -40.82 -0.27 8.57 16 38 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.85 7.28 -51.93 -0.38 0.48 16 41 H 0.07 1.31 6.92 -51.93 -0.36 0.95 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 1.71 7.60 -51.93 -0.39 1.32 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.06 1.22 7.23 -51.93 -0.38 0.84 16 48 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -28.90 381.26 -9.62 -38.52 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -8.60 Total: 13.52 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 0.09 Total: -5.44 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.26 Total: -52.95 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.18 Total: -5.39 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.90 -9.62 -38.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115489360.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.974 kcal (2) G-P(sol) polarization free energy of solvation -28.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds