Wall clock time and date at job start Tue Mar 31 2020 10:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81400 * 102.99842 * 2 1 4 4 H 1.08995 * 109.47158 * 55.00335 * 3 2 1 5 5 C 1.53002 * 109.46907 * 294.99457 * 3 2 1 6 6 C 1.53003 * 109.46794 * 175.00149 * 3 2 1 7 7 C 1.50699 * 109.46840 * 295.00020 * 6 3 2 8 8 O 1.21279 * 120.00480 * 359.97438 * 7 6 3 9 9 N 1.34780 * 119.99994 * 180.02562 * 7 6 3 10 10 C 1.46497 * 120.00197 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47292 * 176.62897 * 10 9 7 12 12 N 1.46500 * 109.47017 * 54.62785 * 11 10 9 13 13 C 1.36934 * 120.00081 * 62.84144 * 12 11 10 14 14 H 1.08006 * 119.99766 * 354.25476 * 13 12 11 15 15 C 1.38805 * 120.00121 * 174.25428 * 13 12 11 16 16 N 1.31615 * 120.00477 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99958 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46842 * 90.00064 * 17 15 13 19 19 H 1.48501 * 109.47425 * 209.99829 * 17 15 13 20 20 H 1.48495 * 109.47322 * 330.00273 * 17 15 13 21 21 C 1.52999 * 109.46798 * 294.63092 * 11 10 9 22 22 C 1.53002 * 109.46798 * 179.97438 * 21 11 10 23 23 C 1.53001 * 109.47364 * 60.00187 * 22 21 11 24 24 C 1.53003 * 109.46539 * 299.99906 * 23 22 21 25 25 C 1.52999 * 109.47422 * 60.00315 * 24 23 22 26 26 H 1.09004 * 109.46937 * 60.00237 * 1 2 3 27 27 H 1.09000 * 109.47600 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47049 * 300.00137 * 1 2 3 29 29 H 1.09004 * 109.46961 * 180.02562 * 5 3 2 30 30 H 1.08990 * 109.47492 * 300.00349 * 5 3 2 31 31 H 1.09004 * 109.46765 * 60.00812 * 5 3 2 32 32 H 1.08995 * 109.47156 * 174.99654 * 6 3 2 33 33 H 1.08994 * 109.47305 * 54.99639 * 6 3 2 34 34 H 0.96998 * 119.99629 * 359.97438 * 9 7 6 35 35 H 1.08996 * 109.47356 * 296.63050 * 10 9 7 36 36 H 1.08997 * 109.47007 * 56.62631 * 10 9 7 37 37 H 0.96999 * 120.00157 * 242.84001 * 12 11 10 38 38 H 0.97001 * 120.00884 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.47211 * 299.99512 * 21 11 10 40 40 H 1.08996 * 109.47430 * 59.99705 * 21 11 10 41 41 H 1.09001 * 109.47322 * 299.99513 * 22 21 11 42 42 H 1.09001 * 109.47182 * 179.97438 * 22 21 11 43 43 H 1.09000 * 109.46852 * 180.02562 * 23 22 21 44 44 H 1.08998 * 109.46950 * 59.99455 * 23 22 21 45 45 H 1.09001 * 109.46840 * 299.99874 * 24 23 22 46 46 H 1.09006 * 109.47012 * 180.02562 * 24 23 22 47 47 H 1.08999 * 109.46726 * 180.02562 * 25 24 23 48 48 H 1.08997 * 109.47203 * 59.99235 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7429 2.4015 -1.3074 6 6 3.7370 1.9411 0.1257 7 6 4.1919 1.4269 1.4672 8 8 3.3840 0.9673 2.2462 9 7 5.4965 1.4787 1.8017 10 6 5.9387 0.9793 3.1060 11 6 7.4628 1.0757 3.1991 12 7 7.8831 2.4510 2.9193 13 6 7.4852 3.4696 3.7433 14 1 6.7873 3.2749 4.5443 15 6 7.9786 4.7524 3.5492 16 7 8.8294 4.9897 2.5734 17 14 7.4351 6.1422 4.6730 18 1 8.3582 6.2305 5.8330 19 1 7.4590 7.4236 3.9228 20 1 6.0563 5.8774 5.1566 21 6 8.0969 0.1306 2.1765 22 6 9.6211 0.2275 2.2692 23 6 10.0726 -0.1669 3.6768 24 6 9.4384 0.7782 4.6993 25 6 7.9143 0.6813 4.6068 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.9884 3.4635 -1.3076 30 1 2.2354 1.9149 -2.1491 31 1 0.6636 2.2778 -1.3970 32 1 3.9903 2.9975 0.0365 33 1 4.2339 1.3803 -0.6659 34 1 6.1426 1.8467 1.1788 35 1 5.4878 1.5790 3.8966 36 1 5.6328 -0.0606 3.2196 37 1 8.4433 2.6400 2.1503 38 1 9.1746 5.8860 2.4380 39 1 7.7843 -0.8926 2.3847 40 1 7.7756 0.4118 1.1737 41 1 9.9335 1.2507 2.0607 42 1 10.0729 -0.4462 1.5410 43 1 11.1584 -0.0975 3.7429 44 1 9.7602 -1.1902 3.8852 45 1 9.7508 1.8015 4.4908 46 1 9.7604 0.4976 5.7022 47 1 7.4626 1.3550 5.3349 48 1 7.6020 -0.3419 4.8151 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115489360.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:11 Heat of formation + Delta-G solvation = -66.733425 kcal Electronic energy + Delta-G solvation = -25468.045857 eV Core-core repulsion = 22068.706450 eV Total energy + Delta-G solvation = -3399.339407 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.92988 -39.80613 -35.92662 -35.42718 -34.97772 -32.79713 -31.54902 -30.53860 -29.93598 -28.74922 -26.33457 -25.68297 -23.54286 -23.02303 -21.74896 -21.10794 -19.79808 -19.01931 -18.04963 -17.59228 -16.92829 -16.70799 -16.23070 -15.97161 -15.66742 -15.32237 -15.26720 -14.96897 -14.80938 -14.43229 -14.29983 -14.20928 -13.68315 -13.54655 -13.39506 -13.23945 -13.02432 -12.90418 -12.86685 -12.78082 -12.58316 -12.47615 -12.32297 -12.14145 -12.04692 -11.87480 -11.66648 -11.30643 -11.08528 -10.86457 -10.71452 -10.68993 -10.58652 -9.79311 -8.88666 -8.43121 -7.86114 -5.10223 0.82834 1.44684 1.47985 1.52884 1.73739 1.84598 2.44192 2.60282 3.46731 3.65084 3.79989 3.84524 3.95077 4.03987 4.15279 4.22136 4.29854 4.32945 4.37217 4.42598 4.49791 4.57775 4.65715 4.68518 4.75746 4.77767 4.81082 4.83245 4.88275 4.93306 4.98554 5.00503 5.09165 5.19370 5.22879 5.25089 5.48067 5.50596 5.52272 5.61213 5.63635 5.75737 5.81663 6.36836 6.78130 7.44888 7.46076 8.18480 8.45494 9.36198 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.012408 B = 0.004155 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.085227 B = 6737.584663 C = 8153.767191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.301 6.301 3 C -0.031 4.031 4 H 0.073 0.927 5 C -0.140 4.140 6 C -0.119 4.119 7 C 0.498 3.502 8 O -0.571 6.571 9 N -0.702 5.702 10 C 0.126 3.874 11 C 0.190 3.810 12 N -0.708 5.708 13 C -0.205 4.205 14 H 0.059 0.941 15 C -0.061 4.061 16 N -0.959 5.959 17 Si 0.945 3.055 18 H -0.294 1.294 19 H -0.299 1.299 20 H -0.284 1.284 21 C -0.106 4.106 22 C -0.112 4.112 23 C -0.108 4.108 24 C -0.106 4.106 25 C -0.114 4.114 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.405 0.595 35 H 0.027 0.973 36 H 0.059 0.941 37 H 0.377 0.623 38 H 0.246 0.754 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.041 0.959 46 H 0.056 0.944 47 H 0.037 0.963 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.597 -10.673 -8.062 15.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.075 6.075 3 C -0.160 4.160 4 H 0.091 0.909 5 C -0.199 4.199 6 C -0.160 4.160 7 C 0.284 3.716 8 O -0.450 6.450 9 N -0.352 5.352 10 C 0.000 4.000 11 C 0.100 3.900 12 N -0.348 5.348 13 C -0.338 4.338 14 H 0.077 0.923 15 C -0.254 4.254 16 N -0.610 5.610 17 Si 0.777 3.223 18 H -0.222 1.222 19 H -0.225 1.225 20 H -0.210 1.210 21 C -0.144 4.144 22 C -0.150 4.150 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.153 4.153 26 H 0.111 0.889 27 H 0.126 0.874 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.241 0.759 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.211 0.789 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.056 0.944 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.561 -11.783 -7.352 16.315 hybrid contribution -0.524 2.612 0.618 2.735 sum -9.085 -9.171 -6.734 14.560 Atomic orbital electron populations 1.23385 0.92105 1.07046 1.05306 1.87034 1.09921 1.12707 1.97850 1.22836 0.97504 0.93447 1.02197 0.90855 1.22066 1.01911 1.01417 0.94484 1.21561 0.94787 1.04699 0.94957 1.21034 0.82209 0.78504 0.89824 1.90681 1.53601 1.47242 1.53525 1.45768 1.08169 1.62604 1.18693 1.21622 0.96864 0.97046 0.84490 1.20006 0.89891 0.85468 0.94685 1.42450 1.60387 1.00881 1.31111 1.19168 1.18094 0.88326 1.08178 0.92292 1.25112 1.00742 0.99209 1.00301 1.69742 1.36717 1.20366 1.34207 0.85570 0.77468 0.80454 0.78820 1.22220 1.22542 1.20951 1.21643 0.95717 0.98937 0.98131 1.21436 0.95235 1.01015 0.97268 1.21452 0.99588 0.99008 0.94468 1.21301 0.94975 0.99600 0.98474 1.21775 0.96504 0.99968 0.97096 0.88922 0.87379 0.90978 0.90376 0.90502 0.91397 0.86157 0.86641 0.75889 0.95413 0.92267 0.78872 0.94454 0.90231 0.91944 0.93696 0.90729 0.92205 0.90891 0.94012 0.92549 0.94413 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 10.45 113.37 1.19 -0.81 16 2 S -0.30 -7.83 20.24 -56.49 -1.14 -8.98 16 3 C -0.03 -0.72 2.44 30.60 0.07 -0.65 16 4 H 0.07 1.99 7.95 -2.39 -0.02 1.97 16 5 C -0.14 -2.27 9.10 71.98 0.66 -1.61 16 6 C -0.12 -2.95 5.17 29.85 0.15 -2.79 16 7 C 0.50 16.76 7.54 87.66 0.66 17.42 16 8 O -0.57 -23.11 14.79 -3.03 -0.04 -23.15 16 9 N -0.70 -23.73 5.09 -463.07 -2.36 -26.09 16 10 C 0.13 4.60 4.37 86.38 0.38 4.97 16 11 C 0.19 6.63 0.41 3.60 0.00 6.63 16 12 N -0.71 -30.60 3.40 -303.34 -1.03 -31.63 16 13 C -0.21 -10.41 8.70 84.03 0.73 -9.68 16 14 H 0.06 3.09 6.77 -2.91 -0.02 3.07 16 15 C -0.06 -3.29 5.50 84.86 0.47 -2.83 16 16 N -0.96 -54.54 13.07 21.65 0.28 -54.25 16 17 Si 0.94 45.53 29.55 68.60 2.03 47.56 16 18 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 19 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 20 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 21 C -0.11 -3.03 4.65 30.59 0.14 -2.89 16 22 C -0.11 -3.15 5.75 30.60 0.18 -2.98 16 23 C -0.11 -2.92 5.92 30.60 0.18 -2.74 16 24 C -0.11 -3.51 5.76 30.59 0.18 -3.33 16 25 C -0.11 -3.88 4.52 30.59 0.14 -3.74 16 26 H 0.09 1.29 7.14 -2.39 -0.02 1.27 16 27 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 0.96 6.92 -2.38 -0.02 0.94 16 32 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.41 13.11 7.39 -92.71 -0.69 12.42 16 35 H 0.03 1.18 7.50 -2.39 -0.02 1.17 16 36 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.38 17.57 6.63 -92.71 -0.61 16.96 16 38 H 0.25 13.94 8.31 -92.71 -0.77 13.16 16 39 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 1.73 7.28 -2.39 -0.02 1.71 16 41 H 0.04 1.55 6.92 -2.39 -0.02 1.53 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.04 1.73 7.60 -2.39 -0.02 1.71 16 46 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 47 H 0.04 1.46 7.23 -2.39 -0.02 1.44 16 48 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -63.95 381.26 2.49 -61.46 By element: Atomic # 1 Polarization: 40.48 SS G_CDS: -0.36 Total: 40.11 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 5.12 Total: -5.03 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -3.11 Total: -111.97 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.04 Total: -23.15 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Atomic # 16 Polarization: -7.83 SS G_CDS: -1.14 Total: -8.98 kcal Total: -63.95 2.49 -61.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115489360.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.271 kcal (2) G-P(sol) polarization free energy of solvation -63.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds