Wall clock time and date at job start Tue Mar 31 2020 10:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46978 * 2 1 4 4 C 1.52996 * 109.47437 * 239.99371 * 2 1 3 5 5 C 1.52992 * 109.47296 * 65.79287 * 4 2 1 6 6 H 1.08999 * 109.47464 * 303.03563 * 5 4 2 7 7 C 1.53002 * 109.47432 * 183.03656 * 5 4 2 8 8 N 1.46505 * 109.47290 * 63.03463 * 5 4 2 9 9 C 1.34771 * 120.00085 * 207.54536 * 8 5 4 10 10 O 1.21280 * 120.00117 * 5.21880 * 9 8 5 11 11 C 1.50698 * 120.00048 * 185.22516 * 9 8 5 12 12 S 1.81000 * 109.47124 * 185.22848 * 11 9 8 13 13 C 1.76207 * 99.99794 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00274 * 0.02562 * 13 12 11 15 15 C 1.38805 * 119.99828 * 180.02562 * 13 12 11 16 16 N 1.31630 * 119.99915 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99917 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46907 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47348 * 119.99637 * 17 15 13 20 20 H 1.48504 * 109.46872 * 240.00005 * 17 15 13 21 21 N 1.46905 * 109.47071 * 119.99262 * 2 1 3 22 22 C 1.46905 * 111.00032 * 277.87483 * 21 2 1 23 23 C 1.53001 * 109.47026 * 184.75098 * 22 21 2 24 24 C 1.53784 * 113.61128 * 184.54446 * 23 22 21 25 25 C 1.53784 * 87.17188 * 220.06068 * 24 23 22 26 26 C 1.53783 * 87.08035 * 25.39643 * 25 24 23 27 27 H 1.09001 * 109.46822 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47058 * 300.00455 * 1 2 3 29 29 H 1.09001 * 109.46702 * 60.01091 * 1 2 3 30 30 H 1.09006 * 109.47095 * 185.79348 * 4 2 1 31 31 H 1.08999 * 109.46855 * 305.79063 * 4 2 1 32 32 H 1.08999 * 109.47014 * 59.99635 * 7 5 4 33 33 H 1.09001 * 109.47380 * 180.02562 * 7 5 4 34 34 H 1.09004 * 109.46596 * 299.99637 * 7 5 4 35 35 H 0.96999 * 119.99835 * 27.54204 * 8 5 4 36 36 H 1.09005 * 109.47022 * 305.22894 * 11 9 8 37 37 H 1.08994 * 109.47511 * 65.22706 * 11 9 8 38 38 H 0.96998 * 119.99965 * 180.02562 * 16 15 13 39 39 H 1.00894 * 111.00328 * 153.91506 * 21 2 1 40 40 H 1.09001 * 109.47362 * 64.74917 * 22 21 2 41 41 H 1.09000 * 109.46815 * 304.74999 * 22 21 2 42 42 H 1.08999 * 112.90849 * 315.79932 * 23 22 21 43 43 H 1.08999 * 113.60778 * 105.47188 * 24 23 22 44 44 H 1.08996 * 113.61573 * 334.65355 * 24 23 22 45 45 H 1.08998 * 113.61133 * 139.94044 * 25 24 23 46 46 H 1.08999 * 113.61582 * 270.84681 * 25 24 23 47 47 H 1.08995 * 113.62157 * 89.11404 * 26 25 24 48 48 H 1.08998 * 113.61383 * 219.93763 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.6525 0.0788 -2.4942 6 1 0.5714 0.2158 -2.5161 7 6 2.0960 -0.6799 -3.7466 8 7 2.3098 1.3876 -2.4577 9 6 1.7463 2.4423 -3.0794 10 8 0.6507 2.3321 -3.5878 11 6 2.4775 3.7584 -3.1430 12 16 1.4072 5.0074 -3.8985 13 6 2.4819 6.4028 -3.8471 14 1 3.4736 6.3056 -3.4305 15 6 2.0539 7.6270 -4.3420 16 7 0.8451 7.7455 -4.8493 17 14 3.1935 9.1061 -4.2882 18 1 4.4868 8.7125 -3.6736 19 1 3.4307 9.5988 -5.6688 20 1 2.5687 10.1830 -3.4787 21 7 2.0197 -0.6924 1.1996 22 6 2.0180 0.2048 2.3628 23 6 2.6429 -0.5126 3.5611 24 6 2.5894 0.3030 4.8637 25 6 4.0105 -0.2087 5.1529 26 6 4.1748 -0.3759 3.6330 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 3.1252 -0.8120 -1.1987 31 1 1.5946 -1.7147 -1.3023 32 1 1.6070 -1.6537 -3.7737 33 1 1.8203 -0.1096 -4.6336 34 1 3.1772 -0.8167 -3.7247 35 1 3.1506 1.4951 -1.9861 36 1 2.7476 4.0731 -2.1349 37 1 3.3808 3.6437 -3.7420 38 1 0.5462 8.6009 -5.1955 39 1 2.9378 -1.0805 1.0436 40 1 0.9929 0.4871 2.6025 41 1 2.5968 1.0993 2.1326 42 1 2.2903 -1.5378 3.6729 43 1 1.8434 -0.0558 5.5730 44 1 2.5372 1.3797 4.7030 45 1 4.6677 0.5474 5.5825 46 1 4.0324 -1.1507 5.7007 47 1 4.5562 0.5150 3.1343 48 1 4.7099 -1.2819 3.3488 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133735097.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:18 Heat of formation + Delta-G solvation = -40.374866 kcal Electronic energy + Delta-G solvation = -23837.812971 eV Core-core repulsion = 20439.616557 eV Total energy + Delta-G solvation = -3398.196414 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.69587 -39.24756 -37.42674 -35.09296 -32.43711 -32.04207 -30.59576 -28.54185 -27.43579 -26.64574 -25.89941 -25.49002 -22.86200 -21.67648 -20.70882 -20.13422 -19.58370 -17.84849 -16.53130 -16.45254 -16.12285 -15.79339 -15.28112 -14.87459 -14.80862 -14.69202 -14.32578 -13.94891 -13.61194 -13.29941 -13.20655 -12.80508 -12.76634 -12.71078 -12.44361 -12.26861 -12.13473 -11.97874 -11.84734 -11.77987 -11.30546 -11.08050 -11.02840 -10.95984 -10.85962 -10.81098 -10.75714 -10.48089 -10.36579 -9.80861 -9.36934 -9.08380 -8.86679 -8.65329 -8.23625 -6.50344 -6.22555 -3.92823 3.04531 3.11224 3.20705 3.27753 3.32690 3.73880 3.77214 4.19679 4.26389 4.36702 4.45595 4.54089 4.61722 4.75043 4.90710 5.08152 5.12676 5.17687 5.18857 5.26409 5.32852 5.36508 5.37255 5.39863 5.50422 5.55472 5.57381 5.60144 5.64084 5.68007 5.70118 5.71714 5.84902 5.88286 5.88911 5.94675 6.04051 6.13523 6.18068 6.19126 6.28792 6.71127 6.83990 7.16401 7.59054 7.73659 8.34636 8.63986 9.22927 10.84931 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.011990 B = 0.002732 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.711705 B =10246.570719 C =11874.449974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.082 3.918 3 H 0.048 0.952 4 C -0.125 4.125 5 C 0.141 3.859 6 H 0.095 0.905 7 C -0.163 4.163 8 N -0.734 5.734 9 C 0.533 3.467 10 O -0.517 6.517 11 C -0.154 4.154 12 S -0.060 6.060 13 C -0.534 4.534 14 H 0.072 0.928 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.280 1.280 21 N -0.685 5.685 22 C 0.067 3.933 23 C -0.109 4.109 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.142 4.142 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.395 0.605 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.268 0.732 39 H 0.338 0.662 40 H 0.072 0.928 41 H 0.031 0.969 42 H 0.097 0.903 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.471 -19.948 15.768 26.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 H 0.066 0.934 4 C -0.163 4.163 5 C 0.035 3.965 6 H 0.113 0.887 7 C -0.221 4.221 8 N -0.388 5.388 9 C 0.319 3.681 10 O -0.391 6.391 11 C -0.304 4.304 12 S 0.166 5.834 13 C -0.683 4.683 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.206 1.206 21 N -0.316 5.316 22 C -0.062 4.062 23 C -0.128 4.128 24 C -0.175 4.175 25 C -0.180 4.180 26 C -0.179 4.179 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.228 0.772 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.156 0.844 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.115 0.885 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.848 -20.270 15.042 25.533 hybrid contribution 3.266 1.723 0.550 3.733 sum 7.114 -18.547 15.592 25.253 Atomic orbital electron populations 1.21835 0.94232 1.02111 1.01820 1.21537 0.96455 0.96103 0.88635 0.93436 1.22033 1.01013 0.99933 0.93321 1.20941 0.99354 0.82345 0.93838 0.88701 1.22184 1.01274 1.00229 0.98449 1.46103 1.26663 1.09068 1.57014 1.20275 0.85890 0.84733 0.77163 1.90694 1.19705 1.83818 1.44887 1.23536 1.04433 0.97133 1.05337 1.85392 1.19478 1.00395 1.78109 1.22904 1.02429 0.95823 1.47114 0.90944 1.24998 0.95621 0.98464 0.94555 1.70027 1.16899 1.25522 1.37820 0.86118 0.80128 0.81266 0.77992 1.19639 1.20548 1.20567 1.60571 1.31050 1.36125 1.03876 1.22016 1.00775 0.93519 0.89864 1.22631 0.95406 1.00380 0.94333 1.22913 0.97218 1.00192 0.97138 1.22786 0.97318 1.01349 0.96547 1.23046 0.96299 1.01919 0.96641 0.92129 0.93003 0.91817 0.91678 0.89698 0.91829 0.91827 0.92684 0.77190 0.89634 0.89184 0.92236 0.84446 0.90912 0.95058 0.88491 0.91465 0.90091 0.91558 0.90279 0.90324 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.16 37.16 0.34 -1.18 16 2 C 0.08 0.78 2.62 -67.71 -0.18 0.60 16 3 H 0.05 0.52 7.16 -51.93 -0.37 0.15 16 4 C -0.12 -1.05 4.32 -26.74 -0.12 -1.17 16 5 C 0.14 1.59 2.51 -67.93 -0.17 1.42 16 6 H 0.10 1.29 5.74 -51.93 -0.30 0.99 16 7 C -0.16 -1.73 9.51 37.16 0.35 -1.38 16 8 N -0.73 -9.51 4.32 -53.81 -0.23 -9.74 16 9 C 0.53 9.78 7.82 -10.99 -0.09 9.69 16 10 O -0.52 -11.54 15.46 5.56 0.09 -11.45 16 11 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 12 S -0.06 -1.64 20.58 -107.50 -2.21 -3.85 16 13 C -0.53 -15.24 9.50 30.94 0.29 -14.95 16 14 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 15 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 16 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 17 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 N -0.68 -5.76 6.33 -106.72 -0.68 -6.44 16 22 C 0.07 0.57 5.35 -3.82 -0.02 0.55 16 23 C -0.11 -0.77 3.86 -89.71 -0.35 -1.12 16 24 C -0.14 -0.93 7.64 -25.92 -0.20 -1.13 16 25 C -0.14 -0.90 8.08 -25.92 -0.21 -1.11 16 26 C -0.14 -0.93 7.64 -25.82 -0.20 -1.13 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.56 7.37 -51.93 -0.38 0.18 16 29 H 0.06 0.78 6.53 -51.93 -0.34 0.44 16 30 H 0.06 0.47 8.01 -51.93 -0.42 0.05 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.39 4.10 8.63 -40.82 -0.35 3.75 16 36 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 37 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.34 2.48 8.25 -39.30 -0.32 2.15 16 40 H 0.07 0.68 7.38 -51.93 -0.38 0.30 16 41 H 0.03 0.28 7.66 -51.93 -0.40 -0.11 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.55 7.90 -51.93 -0.41 0.14 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 397.01 15.07 5.98 5.98 Total: -1.00 -32.92 397.01 -10.46 -43.38 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -8.71 Total: 2.96 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -0.41 Total: -11.78 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -0.17 Total: -41.65 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.92 -10.46 -43.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133735097.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.006 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds