Wall clock time and date at job start Tue Mar 31 2020 10:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46978 * 2 1 4 4 C 1.52996 * 109.47437 * 239.99371 * 2 1 3 5 5 C 1.52992 * 109.47296 * 65.79287 * 4 2 1 6 6 H 1.08999 * 109.47464 * 303.03563 * 5 4 2 7 7 C 1.53002 * 109.47432 * 183.03656 * 5 4 2 8 8 N 1.46505 * 109.47290 * 63.03463 * 5 4 2 9 9 C 1.34771 * 120.00085 * 207.54536 * 8 5 4 10 10 O 1.21280 * 120.00117 * 5.21880 * 9 8 5 11 11 C 1.50698 * 120.00048 * 185.22516 * 9 8 5 12 12 S 1.81000 * 109.47124 * 185.22848 * 11 9 8 13 13 C 1.76207 * 99.99794 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00274 * 0.02562 * 13 12 11 15 15 C 1.38805 * 119.99828 * 180.02562 * 13 12 11 16 16 N 1.31630 * 119.99915 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99917 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46907 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47348 * 119.99637 * 17 15 13 20 20 H 1.48504 * 109.46872 * 240.00005 * 17 15 13 21 21 N 1.46905 * 109.47071 * 119.99262 * 2 1 3 22 22 C 1.46905 * 111.00032 * 277.87483 * 21 2 1 23 23 C 1.53001 * 109.47026 * 184.75098 * 22 21 2 24 24 C 1.53784 * 113.61128 * 184.54446 * 23 22 21 25 25 C 1.53784 * 87.17188 * 220.06068 * 24 23 22 26 26 C 1.53783 * 87.08035 * 25.39643 * 25 24 23 27 27 H 1.09001 * 109.46822 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47058 * 300.00455 * 1 2 3 29 29 H 1.09001 * 109.46702 * 60.01091 * 1 2 3 30 30 H 1.09006 * 109.47095 * 185.79348 * 4 2 1 31 31 H 1.08999 * 109.46855 * 305.79063 * 4 2 1 32 32 H 1.08999 * 109.47014 * 59.99635 * 7 5 4 33 33 H 1.09001 * 109.47380 * 180.02562 * 7 5 4 34 34 H 1.09004 * 109.46596 * 299.99637 * 7 5 4 35 35 H 0.96999 * 119.99835 * 27.54204 * 8 5 4 36 36 H 1.09005 * 109.47022 * 305.22894 * 11 9 8 37 37 H 1.08994 * 109.47511 * 65.22706 * 11 9 8 38 38 H 0.96998 * 119.99965 * 180.02562 * 16 15 13 39 39 H 1.00894 * 111.00328 * 153.91506 * 21 2 1 40 40 H 1.09001 * 109.47362 * 64.74917 * 22 21 2 41 41 H 1.09000 * 109.46815 * 304.74999 * 22 21 2 42 42 H 1.08999 * 112.90849 * 315.79932 * 23 22 21 43 43 H 1.08999 * 113.60778 * 105.47188 * 24 23 22 44 44 H 1.08996 * 113.61573 * 334.65355 * 24 23 22 45 45 H 1.08998 * 113.61133 * 139.94044 * 25 24 23 46 46 H 1.08999 * 113.61582 * 270.84681 * 25 24 23 47 47 H 1.08995 * 113.62157 * 89.11404 * 26 25 24 48 48 H 1.08998 * 113.61383 * 219.93763 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.6525 0.0788 -2.4942 6 1 0.5714 0.2158 -2.5161 7 6 2.0960 -0.6799 -3.7466 8 7 2.3098 1.3876 -2.4577 9 6 1.7463 2.4423 -3.0794 10 8 0.6507 2.3321 -3.5878 11 6 2.4775 3.7584 -3.1430 12 16 1.4072 5.0074 -3.8985 13 6 2.4819 6.4028 -3.8471 14 1 3.4736 6.3056 -3.4305 15 6 2.0539 7.6270 -4.3420 16 7 0.8451 7.7455 -4.8493 17 14 3.1935 9.1061 -4.2882 18 1 4.4868 8.7125 -3.6736 19 1 3.4307 9.5988 -5.6688 20 1 2.5687 10.1830 -3.4787 21 7 2.0197 -0.6924 1.1996 22 6 2.0180 0.2048 2.3628 23 6 2.6429 -0.5126 3.5611 24 6 2.5894 0.3030 4.8637 25 6 4.0105 -0.2087 5.1529 26 6 4.1748 -0.3759 3.6330 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 3.1252 -0.8120 -1.1987 31 1 1.5946 -1.7147 -1.3023 32 1 1.6070 -1.6537 -3.7737 33 1 1.8203 -0.1096 -4.6336 34 1 3.1772 -0.8167 -3.7247 35 1 3.1506 1.4951 -1.9861 36 1 2.7476 4.0731 -2.1349 37 1 3.3808 3.6437 -3.7420 38 1 0.5462 8.6009 -5.1955 39 1 2.9378 -1.0805 1.0436 40 1 0.9929 0.4871 2.6025 41 1 2.5968 1.0993 2.1326 42 1 2.2903 -1.5378 3.6729 43 1 1.8434 -0.0558 5.5730 44 1 2.5372 1.3797 4.7030 45 1 4.6677 0.5474 5.5825 46 1 4.0324 -1.1507 5.7007 47 1 4.5562 0.5150 3.1343 48 1 4.7099 -1.2819 3.3488 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133735097.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:17 Heat of formation + Delta-G solvation = -61.938257 kcal Electronic energy + Delta-G solvation = -23838.748030 eV Core-core repulsion = 20439.616557 eV Total energy + Delta-G solvation = -3399.131473 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.89499 -39.94856 -38.38039 -36.10974 -34.59904 -33.17330 -31.55717 -29.96879 -28.18892 -27.67589 -27.36877 -26.42486 -23.60446 -22.58743 -21.83695 -21.13988 -20.15919 -19.84161 -17.94673 -17.31858 -17.14219 -16.89566 -16.54178 -16.33139 -16.06178 -15.82732 -15.37837 -15.05155 -14.71815 -14.51525 -14.37389 -14.06864 -13.87353 -13.36880 -13.31173 -13.25914 -13.17205 -13.03744 -12.92618 -12.82061 -12.80209 -12.57605 -12.51938 -12.08417 -11.74937 -11.68753 -11.67290 -11.38423 -11.17203 -11.05213 -10.97143 -10.90345 -10.28783 -10.06983 -9.38147 -8.67883 -8.36173 -6.14091 1.26246 1.40187 1.46195 1.57049 1.64189 2.25180 2.32577 2.97991 3.05820 3.31423 3.70341 3.77439 3.86081 3.86994 3.95161 4.00568 4.02162 4.17186 4.27513 4.37828 4.43365 4.46222 4.48685 4.51660 4.62057 4.77705 4.80135 4.86851 4.87089 4.90421 4.91903 4.96081 5.03250 5.06780 5.09759 5.15244 5.18920 5.31391 5.37393 5.38428 5.40505 5.59532 5.63781 6.09632 6.18579 6.52194 6.55981 7.05198 7.27896 8.73322 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.011990 B = 0.002732 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.711705 B =10246.570719 C =11874.449974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.086 3.914 3 H 0.033 0.967 4 C -0.111 4.111 5 C 0.139 3.861 6 H 0.069 0.931 7 C -0.158 4.158 8 N -0.708 5.708 9 C 0.535 3.465 10 O -0.564 6.564 11 C -0.130 4.130 12 S -0.151 6.151 13 C -0.545 4.545 14 H 0.082 0.918 15 C 0.012 3.988 16 N -0.911 5.911 17 Si 0.999 3.001 18 H -0.257 1.257 19 H -0.274 1.274 20 H -0.274 1.274 21 N -0.680 5.680 22 C 0.070 3.930 23 C -0.104 4.104 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.138 4.138 27 H 0.068 0.932 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.031 0.969 34 H 0.074 0.926 35 H 0.412 0.588 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.271 0.729 39 H 0.348 0.652 40 H 0.058 0.942 41 H 0.025 0.975 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.074 0.926 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.278 -21.268 17.127 28.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 H 0.051 0.949 4 C -0.149 4.149 5 C 0.034 3.966 6 H 0.087 0.913 7 C -0.216 4.216 8 N -0.362 5.362 9 C 0.321 3.679 10 O -0.442 6.442 11 C -0.281 4.281 12 S 0.076 5.924 13 C -0.693 4.693 14 H 0.100 0.900 15 C -0.193 4.193 16 N -0.548 5.548 17 Si 0.821 3.179 18 H -0.180 1.180 19 H -0.199 1.199 20 H -0.199 1.199 21 N -0.312 5.312 22 C -0.059 4.059 23 C -0.123 4.123 24 C -0.179 4.179 25 C -0.178 4.178 26 C -0.175 4.175 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.248 0.752 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.080 0.920 39 H 0.168 0.832 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.115 0.885 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.105 0.895 47 H 0.093 0.907 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.701 -21.637 16.436 27.986 hybrid contribution 2.375 2.003 0.192 3.113 sum 9.076 -19.635 16.628 27.284 Atomic orbital electron populations 1.21796 0.95493 1.02136 1.00379 1.21435 0.95450 0.95695 0.89817 0.94927 1.21940 1.02620 0.99582 0.90744 1.21092 0.97908 0.81562 0.96057 0.91304 1.22140 1.02722 1.00503 0.96270 1.45870 1.26793 1.08488 1.55020 1.19998 0.85235 0.85225 0.77430 1.90686 1.21708 1.84472 1.47366 1.23379 1.03238 0.95750 1.05755 1.85575 1.23384 1.03691 1.79762 1.23223 1.02635 0.96204 1.47195 0.90026 1.26143 0.97336 1.01975 0.93796 1.70190 1.19148 1.26541 1.38906 0.84898 0.78091 0.76624 0.78286 1.18030 1.19898 1.19907 1.60506 1.31780 1.35709 1.03210 1.21971 0.99975 0.93535 0.90449 1.22575 0.95885 1.00127 0.93716 1.22937 0.97893 0.99872 0.97158 1.22800 0.96712 1.01730 0.96546 1.23018 0.95636 1.02131 0.96746 0.91328 0.93772 0.93947 0.89120 0.88178 0.89707 0.94972 0.90710 0.75153 0.87641 0.87434 0.91986 0.83234 0.92312 0.95712 0.88473 0.91240 0.90673 0.91426 0.89492 0.90707 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.16 71.98 0.66 -2.32 16 2 C 0.09 1.50 2.62 44.91 0.12 1.61 16 3 H 0.03 0.68 7.16 -2.39 -0.02 0.66 16 4 C -0.11 -1.55 4.32 30.59 0.13 -1.42 16 5 C 0.14 2.93 2.51 44.99 0.11 3.05 16 6 H 0.07 1.89 5.74 -2.39 -0.01 1.88 16 7 C -0.16 -3.05 9.51 71.98 0.68 -2.37 16 8 N -0.71 -17.32 4.32 -442.54 -1.91 -19.23 16 9 C 0.54 19.65 7.82 87.66 0.69 20.33 16 10 O -0.56 -26.12 15.46 -3.03 -0.05 -26.17 16 11 C -0.13 -5.17 6.16 71.24 0.44 -4.74 16 12 S -0.15 -8.46 20.58 -56.49 -1.16 -9.63 16 13 C -0.54 -31.27 9.50 67.96 0.65 -30.62 16 14 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 15 C 0.01 0.70 5.49 84.86 0.47 1.16 16 16 N -0.91 -56.30 13.22 21.65 0.29 -56.01 16 17 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 18 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 N -0.68 -10.00 6.33 -491.54 -3.11 -13.11 16 22 C 0.07 1.10 5.35 86.30 0.46 1.56 16 23 C -0.10 -1.32 3.86 -10.21 -0.04 -1.36 16 24 C -0.14 -1.76 7.64 31.12 0.24 -1.52 16 25 C -0.14 -1.52 8.08 31.12 0.25 -1.26 16 26 C -0.14 -1.52 7.64 31.18 0.24 -1.28 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.04 0.98 7.37 -2.39 -0.02 0.96 16 29 H 0.04 1.08 6.53 -2.39 -0.02 1.06 16 30 H 0.09 0.88 8.01 -2.38 -0.02 0.86 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.41 7.40 8.63 -92.71 -0.80 6.60 16 36 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 37 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 38 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 39 H 0.35 3.99 8.25 -89.70 -0.74 3.25 16 40 H 0.06 1.09 7.38 -2.39 -0.02 1.07 16 41 H 0.02 0.42 7.66 -2.39 -0.02 0.41 16 42 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 1.02 8.10 -2.39 -0.02 1.00 16 45 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.07 0.89 7.90 -2.39 -0.02 0.88 16 48 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -74.45 397.01 0.57 -73.88 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -0.60 Total: 23.64 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 5.09 Total: -19.16 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -4.74 Total: -88.35 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.05 Total: -26.17 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.63 kcal Total: -74.45 0.57 -73.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133735097.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.946 kcal (2) G-P(sol) polarization free energy of solvation -74.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds