Wall clock time and date at job start Tue Mar 31 2020 11:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46900 * 109.46943 * 2 1 4 4 C 1.46905 * 110.99833 * 167.64887 * 3 2 1 5 5 C 1.53000 * 109.46557 * 288.37225 * 4 3 2 6 6 C 1.53776 * 113.61508 * 272.66664 * 5 4 3 7 7 C 1.53963 * 87.01874 * 220.04964 * 6 5 4 8 8 C 1.53779 * 113.61011 * 175.05693 * 5 4 3 9 9 C 1.46901 * 110.99829 * 291.59397 * 3 2 1 10 10 H 1.09002 * 109.46923 * 49.74709 * 9 3 2 11 11 C 1.52999 * 109.47611 * 289.74755 * 9 3 2 12 12 C 1.52999 * 109.47038 * 169.74147 * 9 3 2 13 13 N 1.46490 * 109.47312 * 303.80694 * 12 9 3 14 14 C 1.34781 * 120.00288 * 184.81646 * 13 12 9 15 15 O 1.21284 * 119.99692 * 359.97438 * 14 13 12 16 16 C 1.50695 * 120.00183 * 180.02562 * 14 13 12 17 17 S 1.81003 * 109.47095 * 179.97438 * 16 14 13 18 18 C 1.76202 * 100.00257 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99654 * 0.02562 * 18 17 16 20 20 C 1.38790 * 120.00122 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00215 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00133 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46856 * 59.99887 * 22 20 18 24 24 H 1.48493 * 109.47403 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46894 * 300.00078 * 22 20 18 26 26 H 1.09005 * 109.47689 * 186.05508 * 1 2 3 27 27 H 1.09000 * 109.47648 * 306.05378 * 1 2 3 28 28 H 1.08998 * 109.47439 * 66.05121 * 1 2 3 29 29 H 1.09000 * 109.47200 * 239.99539 * 2 1 3 30 30 H 1.09004 * 109.46562 * 119.99597 * 2 1 3 31 31 H 1.08997 * 109.47338 * 48.37246 * 4 3 2 32 32 H 1.08998 * 109.47117 * 168.37962 * 4 3 2 33 33 H 1.08998 * 112.85133 * 43.86576 * 5 4 3 34 34 H 1.08996 * 113.61611 * 334.57029 * 6 5 4 35 35 H 1.08997 * 113.61440 * 105.47565 * 6 5 4 36 36 H 1.08993 * 113.53681 * 270.81007 * 7 6 5 37 37 H 1.09002 * 113.66195 * 139.93318 * 7 6 5 38 38 H 1.09001 * 113.61721 * 254.52616 * 8 5 4 39 39 H 1.08997 * 113.61811 * 25.35262 * 8 5 4 40 40 H 1.09002 * 109.46940 * 299.99945 * 11 9 3 41 41 H 1.09005 * 109.47172 * 59.99419 * 11 9 3 42 42 H 1.08993 * 109.47281 * 179.97438 * 11 9 3 43 43 H 1.08996 * 109.46923 * 63.81447 * 12 9 3 44 44 H 1.09005 * 109.46763 * 183.80686 * 12 9 3 45 45 H 0.97005 * 120.00259 * 4.81497 * 13 12 9 46 46 H 1.09000 * 109.47126 * 299.99448 * 16 14 13 47 47 H 1.08998 * 109.47797 * 59.99589 * 16 14 13 48 48 H 0.97003 * 120.00430 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4582 1.4348 0.2934 5 6 3.6900 1.0964 1.7674 6 6 3.6041 2.3159 2.7002 7 6 4.8017 1.7175 3.4607 8 6 5.1761 1.0028 2.1515 9 6 1.7192 2.0495 -1.2752 10 1 0.6681 1.9016 -1.5232 11 6 2.5928 1.4520 -2.3800 12 6 2.0079 3.5469 -1.1504 13 7 1.2390 4.1010 -0.0334 14 6 1.2595 5.4271 0.2067 15 8 1.9150 6.1615 -0.5018 16 6 0.4690 5.9970 1.3562 17 16 0.7000 7.7913 1.4163 18 6 -0.3053 8.1827 2.8095 19 1 -0.8284 7.3977 3.3355 20 6 -0.4241 9.4995 3.2315 21 7 0.2146 10.4560 2.5913 22 14 -1.4905 9.9146 4.7080 23 1 -0.9791 9.1991 5.9046 24 1 -1.4496 11.3788 4.9523 25 1 -2.8900 9.4957 4.4412 26 1 -0.3635 -1.0219 0.1084 27 1 -0.3634 0.6048 0.8308 28 1 -0.3634 0.4171 -0.9392 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.9818 0.7118 -0.3321 32 1 3.8368 2.4358 0.0866 33 1 3.0974 0.2460 2.1047 34 1 3.8289 3.2607 2.2056 35 1 2.6868 2.3523 3.2878 36 1 4.5127 1.0378 4.2621 37 1 5.5339 2.4602 3.7775 38 1 5.5260 -0.0193 2.2968 39 1 5.8317 1.5868 1.5057 40 1 3.6439 1.5999 -2.1321 41 1 2.3871 0.3852 -2.4689 42 1 2.3695 1.9448 -3.3262 43 1 3.0720 3.6978 -0.9694 44 1 1.7214 4.0503 -2.0738 45 1 0.7150 3.5136 0.5335 46 1 -0.5882 5.7709 1.2175 47 1 0.8156 5.5549 2.2902 48 1 0.1318 11.3763 2.8864 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151953970.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:09 Heat of formation + Delta-G solvation = -23.910747 kcal Electronic energy + Delta-G solvation = -24754.775499 eV Core-core repulsion = 21357.293023 eV Total energy + Delta-G solvation = -3397.482476 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.02112 -38.84502 -37.80815 -34.29038 -32.37939 -32.02466 -30.73688 -29.26474 -27.06964 -25.96070 -25.64960 -25.32492 -23.11339 -22.82425 -20.11264 -19.68821 -19.33945 -17.75947 -16.56071 -16.45002 -16.09392 -15.76474 -15.07701 -14.97474 -14.75838 -14.49422 -14.33370 -14.11452 -13.85536 -13.23129 -13.14390 -12.77691 -12.67462 -12.61392 -12.51624 -12.40828 -12.13323 -11.92874 -11.84462 -11.65603 -11.49168 -11.06286 -11.00060 -10.99114 -10.80492 -10.71869 -10.56829 -10.30165 -10.27252 -9.76548 -9.27411 -9.01265 -8.69425 -8.49099 -8.16640 -6.43360 -6.16514 -3.86291 3.13330 3.24451 3.27080 3.31029 3.36096 3.54841 3.90425 4.25852 4.46985 4.48569 4.54703 4.67614 4.74479 4.79598 4.91008 4.94304 5.02877 5.13796 5.18425 5.19652 5.27983 5.32517 5.38983 5.44805 5.49881 5.52819 5.59035 5.64108 5.69532 5.70853 5.77155 5.78675 5.83340 5.86256 5.97933 5.99824 6.00750 6.04300 6.18320 6.24769 6.41698 6.75055 6.86254 6.91915 7.64353 7.95612 8.40260 8.78630 9.28697 10.90877 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.014288 B = 0.003148 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.200190 B = 8892.191279 C = 9611.297710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 N -0.527 5.527 4 C 0.061 3.939 5 C -0.103 4.103 6 C -0.125 4.125 7 C -0.146 4.146 8 C -0.137 4.137 9 C 0.065 3.935 10 H 0.092 0.908 11 C -0.183 4.183 12 C 0.132 3.868 13 N -0.724 5.724 14 C 0.530 3.470 15 O -0.526 6.526 16 C -0.151 4.151 17 S -0.062 6.062 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.869 5.869 22 Si 0.917 3.083 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.404 0.596 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.226 -25.285 -4.853 26.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.081 4.081 3 N -0.251 5.251 4 C -0.067 4.067 5 C -0.121 4.121 6 C -0.162 4.162 7 C -0.183 4.183 8 C -0.175 4.175 9 C -0.044 4.044 10 H 0.110 0.890 11 C -0.243 4.243 12 C 0.007 3.993 13 N -0.378 5.378 14 C 0.316 3.684 15 O -0.401 6.401 16 C -0.301 4.301 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.504 5.504 22 Si 0.744 3.256 23 H -0.200 1.200 24 H -0.209 1.209 25 H -0.200 1.200 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.239 0.761 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.111 -23.608 -5.682 25.040 hybrid contribution -1.242 -1.357 1.370 2.294 sum 4.868 -24.965 -4.312 25.798 Atomic orbital electron populations 1.21811 0.94889 1.01581 1.02495 1.22135 0.96043 0.89127 1.00774 1.62186 1.15773 1.16075 1.31046 1.22206 0.87679 1.01424 0.95387 1.22533 0.96121 0.99167 0.94313 1.22881 0.98198 0.97516 0.97655 1.22852 0.98940 0.99968 0.96546 1.22925 0.96299 1.00468 0.97847 1.22022 1.00598 0.93503 0.88263 0.89022 1.22374 1.00852 1.01288 0.99739 1.21270 0.96298 0.91136 0.90564 1.45800 1.51419 1.07618 1.33009 1.20277 0.81299 0.81533 0.85312 1.90690 1.41967 1.58701 1.48731 1.23499 1.02037 1.06003 0.98601 1.85365 1.64395 0.92814 1.40926 1.22840 1.33644 0.95793 1.16014 0.91027 1.24974 0.95911 0.95225 0.97417 1.70011 1.40420 1.00615 1.39356 0.86248 0.80318 0.77395 0.81680 1.19952 1.20853 1.19955 0.92522 0.91525 0.92820 0.94741 0.90717 0.94687 0.90180 0.89418 0.89999 0.91467 0.90546 0.91537 0.91958 0.90263 0.91995 0.92170 0.91583 0.92120 0.91267 0.76053 0.89465 0.89338 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.77 37.16 0.36 -0.65 16 2 C 0.05 0.33 5.42 -3.82 -0.02 0.31 16 3 N -0.53 -4.35 3.83 -226.65 -0.87 -5.22 16 4 C 0.06 0.52 3.54 -3.82 -0.01 0.50 16 5 C -0.10 -0.87 3.72 -89.81 -0.33 -1.21 16 6 C -0.13 -1.28 7.65 -25.83 -0.20 -1.48 16 7 C -0.15 -1.31 8.09 -25.82 -0.21 -1.52 16 8 C -0.14 -1.12 7.65 -25.92 -0.20 -1.31 16 9 C 0.06 0.56 2.36 -67.71 -0.16 0.40 16 10 H 0.09 0.77 6.31 -51.93 -0.33 0.44 16 11 C -0.18 -1.35 8.50 37.16 0.32 -1.03 16 12 C 0.13 1.57 4.92 -4.05 -0.02 1.55 16 13 N -0.72 -10.04 5.42 -60.30 -0.33 -10.36 16 14 C 0.53 10.13 7.85 -10.99 -0.09 10.05 16 15 O -0.53 -12.19 15.86 5.55 0.09 -12.10 16 16 C -0.15 -3.13 6.16 36.00 0.22 -2.90 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 18 C -0.53 -15.45 9.50 30.94 0.29 -15.16 16 19 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 21 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 22 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.37 6.71 -51.93 -0.35 0.02 16 29 H 0.03 0.24 6.34 -51.93 -0.33 -0.09 16 30 H 0.07 0.52 6.31 -51.93 -0.33 0.19 16 31 H 0.03 0.28 7.12 -51.93 -0.37 -0.09 16 32 H 0.08 0.81 5.73 -51.93 -0.30 0.52 16 33 H 0.09 0.73 6.49 -51.93 -0.34 0.39 16 34 H 0.08 0.99 7.90 -51.93 -0.41 0.58 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 40 H 0.06 0.47 6.68 -51.93 -0.35 0.13 16 41 H 0.06 0.40 6.55 -51.93 -0.34 0.06 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.77 6.46 -51.93 -0.34 0.44 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.40 4.88 8.11 -40.82 -0.33 4.55 16 46 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 47 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 48 H 0.27 7.61 8.31 -40.82 -0.34 7.28 16 LS Contribution 386.70 15.07 5.83 5.83 Total: -1.00 -33.10 386.70 -10.21 -43.31 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -8.29 Total: 2.03 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -0.14 Total: -10.43 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: -0.46 Total: -41.34 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.10 -10.21 -43.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151953970.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.399 kcal (2) G-P(sol) polarization free energy of solvation -33.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds