Wall clock time and date at job start Tue Mar 31 2020 11:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46900 * 109.46943 * 2 1 4 4 C 1.46905 * 110.99833 * 167.64887 * 3 2 1 5 5 C 1.53000 * 109.46557 * 288.37225 * 4 3 2 6 6 C 1.53776 * 113.61508 * 272.66664 * 5 4 3 7 7 C 1.53963 * 87.01874 * 220.04964 * 6 5 4 8 8 C 1.53779 * 113.61011 * 175.05693 * 5 4 3 9 9 C 1.46901 * 110.99829 * 291.59397 * 3 2 1 10 10 H 1.09002 * 109.46923 * 49.74709 * 9 3 2 11 11 C 1.52999 * 109.47611 * 289.74755 * 9 3 2 12 12 C 1.52999 * 109.47038 * 169.74147 * 9 3 2 13 13 N 1.46490 * 109.47312 * 303.80694 * 12 9 3 14 14 C 1.34781 * 120.00288 * 184.81646 * 13 12 9 15 15 O 1.21284 * 119.99692 * 359.97438 * 14 13 12 16 16 C 1.50695 * 120.00183 * 180.02562 * 14 13 12 17 17 S 1.81003 * 109.47095 * 179.97438 * 16 14 13 18 18 C 1.76202 * 100.00257 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99654 * 0.02562 * 18 17 16 20 20 C 1.38790 * 120.00122 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00215 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00133 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46856 * 59.99887 * 22 20 18 24 24 H 1.48493 * 109.47403 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46894 * 300.00078 * 22 20 18 26 26 H 1.09005 * 109.47689 * 186.05508 * 1 2 3 27 27 H 1.09000 * 109.47648 * 306.05378 * 1 2 3 28 28 H 1.08998 * 109.47439 * 66.05121 * 1 2 3 29 29 H 1.09000 * 109.47200 * 239.99539 * 2 1 3 30 30 H 1.09004 * 109.46562 * 119.99597 * 2 1 3 31 31 H 1.08997 * 109.47338 * 48.37246 * 4 3 2 32 32 H 1.08998 * 109.47117 * 168.37962 * 4 3 2 33 33 H 1.08998 * 112.85133 * 43.86576 * 5 4 3 34 34 H 1.08996 * 113.61611 * 334.57029 * 6 5 4 35 35 H 1.08997 * 113.61440 * 105.47565 * 6 5 4 36 36 H 1.08993 * 113.53681 * 270.81007 * 7 6 5 37 37 H 1.09002 * 113.66195 * 139.93318 * 7 6 5 38 38 H 1.09001 * 113.61721 * 254.52616 * 8 5 4 39 39 H 1.08997 * 113.61811 * 25.35262 * 8 5 4 40 40 H 1.09002 * 109.46940 * 299.99945 * 11 9 3 41 41 H 1.09005 * 109.47172 * 59.99419 * 11 9 3 42 42 H 1.08993 * 109.47281 * 179.97438 * 11 9 3 43 43 H 1.08996 * 109.46923 * 63.81447 * 12 9 3 44 44 H 1.09005 * 109.46763 * 183.80686 * 12 9 3 45 45 H 0.97005 * 120.00259 * 4.81497 * 13 12 9 46 46 H 1.09000 * 109.47126 * 299.99448 * 16 14 13 47 47 H 1.08998 * 109.47797 * 59.99589 * 16 14 13 48 48 H 0.97003 * 120.00430 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4582 1.4348 0.2934 5 6 3.6900 1.0964 1.7674 6 6 3.6041 2.3159 2.7002 7 6 4.8017 1.7175 3.4607 8 6 5.1761 1.0028 2.1515 9 6 1.7192 2.0495 -1.2752 10 1 0.6681 1.9016 -1.5232 11 6 2.5928 1.4520 -2.3800 12 6 2.0079 3.5469 -1.1504 13 7 1.2390 4.1010 -0.0334 14 6 1.2595 5.4271 0.2067 15 8 1.9150 6.1615 -0.5018 16 6 0.4690 5.9970 1.3562 17 16 0.7000 7.7913 1.4163 18 6 -0.3053 8.1827 2.8095 19 1 -0.8284 7.3977 3.3355 20 6 -0.4241 9.4995 3.2315 21 7 0.2146 10.4560 2.5913 22 14 -1.4905 9.9146 4.7080 23 1 -0.9791 9.1991 5.9046 24 1 -1.4496 11.3788 4.9523 25 1 -2.8900 9.4957 4.4412 26 1 -0.3635 -1.0219 0.1084 27 1 -0.3634 0.6048 0.8308 28 1 -0.3634 0.4171 -0.9392 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.9818 0.7118 -0.3321 32 1 3.8368 2.4358 0.0866 33 1 3.0974 0.2460 2.1047 34 1 3.8289 3.2607 2.2056 35 1 2.6868 2.3523 3.2878 36 1 4.5127 1.0378 4.2621 37 1 5.5339 2.4602 3.7775 38 1 5.5260 -0.0193 2.2968 39 1 5.8317 1.5868 1.5057 40 1 3.6439 1.5999 -2.1321 41 1 2.3871 0.3852 -2.4689 42 1 2.3695 1.9448 -3.3262 43 1 3.0720 3.6978 -0.9694 44 1 1.7214 4.0503 -2.0738 45 1 0.7150 3.5136 0.5335 46 1 -0.5882 5.7709 1.2175 47 1 0.8156 5.5549 2.2902 48 1 0.1318 11.3763 2.8864 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151953970.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:09 Heat of formation + Delta-G solvation = -45.275272 kcal Electronic energy + Delta-G solvation = -24755.701934 eV Core-core repulsion = 21357.293023 eV Total energy + Delta-G solvation = -3398.408911 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.94612 -40.09210 -38.63683 -35.49327 -34.57057 -32.92115 -31.44888 -30.72592 -27.73681 -27.71934 -26.80319 -26.39363 -23.75908 -23.57788 -21.60814 -20.47539 -20.07946 -19.71097 -17.75295 -17.46389 -17.29493 -16.86615 -16.60376 -16.30538 -16.06731 -15.69621 -15.30199 -15.02270 -14.82135 -14.59862 -14.41511 -14.13469 -13.67935 -13.49754 -13.29251 -13.17523 -13.15708 -13.15251 -12.85832 -12.82621 -12.59634 -12.54353 -12.37731 -12.24603 -11.78099 -11.71317 -11.49872 -11.28244 -11.11675 -11.02038 -10.99317 -10.90031 -10.26052 -9.99125 -9.16190 -8.64647 -8.33016 -6.10973 1.28785 1.44611 1.48075 1.58539 1.68669 2.28400 2.37781 2.89888 3.00844 3.35815 3.70666 3.76184 3.84139 3.94626 3.99459 4.07794 4.11978 4.27186 4.30841 4.33292 4.37850 4.49506 4.53419 4.58322 4.60901 4.71848 4.77688 4.78506 4.87218 4.88720 4.92220 4.93039 5.07005 5.13563 5.17011 5.18957 5.19739 5.24642 5.42721 5.44752 5.47482 5.53942 5.67877 6.17786 6.21044 6.22910 6.63558 7.07999 7.33844 8.76043 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.014288 B = 0.003148 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.200190 B = 8892.191279 C = 9611.297710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 N -0.534 5.534 4 C 0.065 3.935 5 C -0.092 4.092 6 C -0.134 4.134 7 C -0.146 4.146 8 C -0.132 4.132 9 C 0.076 3.924 10 H 0.100 0.900 11 C -0.178 4.178 12 C 0.131 3.869 13 N -0.696 5.696 14 C 0.532 3.468 15 O -0.572 6.572 16 C -0.126 4.126 17 S -0.150 6.150 18 C -0.548 4.548 19 H 0.081 0.919 20 C 0.015 3.985 21 N -0.912 5.912 22 Si 0.997 3.003 23 H -0.262 1.262 24 H -0.278 1.278 25 H -0.262 1.262 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.061 0.939 45 H 0.417 0.583 46 H 0.106 0.894 47 H 0.104 0.896 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.201 -28.152 -4.090 28.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 N -0.258 5.258 4 C -0.063 4.063 5 C -0.111 4.111 6 C -0.171 4.171 7 C -0.183 4.183 8 C -0.170 4.170 9 C -0.033 4.033 10 H 0.118 0.882 11 C -0.237 4.237 12 C 0.007 3.993 13 N -0.349 5.349 14 C 0.317 3.683 15 O -0.451 6.451 16 C -0.278 4.278 17 S 0.078 5.922 18 C -0.696 4.696 19 H 0.099 0.901 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.187 1.187 24 H -0.203 1.203 25 H -0.186 1.186 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.254 0.746 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.076 -26.544 -4.920 27.469 hybrid contribution -0.890 -0.576 1.087 1.518 sum 4.186 -27.120 -3.833 27.707 Atomic orbital electron populations 1.21791 0.94592 1.02123 1.02025 1.22168 0.96186 0.88080 1.01402 1.62167 1.15615 1.17243 1.30817 1.22117 0.87986 1.00585 0.95608 1.22481 0.96520 0.98283 0.93800 1.22851 0.98443 0.97352 0.98473 1.22880 0.98118 1.00014 0.97289 1.22888 0.95997 1.01113 0.96957 1.21900 1.01384 0.90963 0.89077 0.88167 1.22324 1.00263 1.01982 0.99158 1.21434 0.95382 0.93447 0.89077 1.45563 1.50459 1.05785 1.33138 1.20025 0.80803 0.82905 0.84540 1.90678 1.44051 1.60179 1.50228 1.23331 1.03600 1.00586 1.00247 1.85532 1.65271 0.99711 1.41727 1.23178 1.33726 0.96572 1.16077 0.90051 1.26111 0.97229 0.94911 1.00761 1.70178 1.42126 1.01117 1.41386 0.85023 0.78442 0.77311 0.77339 1.18686 1.20323 1.18607 0.91407 0.92516 0.92852 0.93886 0.90255 0.93567 0.92156 0.88421 0.92455 0.92229 0.89472 0.92287 0.90411 0.90655 0.92327 0.90771 0.91328 0.93009 0.92020 0.74587 0.87580 0.87775 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.77 71.98 0.70 -0.89 16 2 C 0.05 0.54 5.42 86.30 0.47 1.01 16 3 N -0.53 -7.73 3.83 -870.97 -3.34 -11.06 16 4 C 0.06 1.01 3.54 86.30 0.31 1.31 16 5 C -0.09 -1.42 3.72 -10.27 -0.04 -1.46 16 6 C -0.13 -2.70 7.65 31.18 0.24 -2.47 16 7 C -0.15 -2.50 8.09 31.18 0.25 -2.25 16 8 C -0.13 -1.93 7.65 31.12 0.24 -1.69 16 9 C 0.08 1.15 2.36 44.91 0.11 1.26 16 10 H 0.10 1.43 6.31 -2.39 -0.02 1.41 16 11 C -0.18 -2.23 8.50 71.98 0.61 -1.62 16 12 C 0.13 3.03 4.92 86.38 0.42 3.45 16 13 N -0.70 -18.83 5.42 -463.08 -2.51 -21.33 16 14 C 0.53 20.49 7.85 87.65 0.69 21.18 16 15 O -0.57 -27.39 15.86 -3.04 -0.05 -27.44 16 16 C -0.13 -5.24 6.16 71.23 0.44 -4.80 16 17 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 18 C -0.55 -31.90 9.50 67.95 0.65 -31.25 16 19 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.84 5.49 84.86 0.47 1.31 16 21 N -0.91 -56.76 13.22 21.65 0.29 -56.48 16 22 Si 1.00 44.14 29.55 68.60 2.03 46.16 16 23 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 26 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.58 6.71 -2.39 -0.02 0.57 16 29 H 0.04 0.43 6.34 -2.39 -0.02 0.42 16 30 H 0.08 0.85 6.31 -2.39 -0.02 0.83 16 31 H 0.05 0.63 7.12 -2.39 -0.02 0.62 16 32 H 0.06 1.20 5.73 -2.39 -0.01 1.19 16 33 H 0.10 1.35 6.49 -2.39 -0.02 1.34 16 34 H 0.06 1.43 7.90 -2.39 -0.02 1.41 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 40 H 0.06 0.79 6.68 -2.39 -0.02 0.77 16 41 H 0.07 0.76 6.55 -2.38 -0.02 0.74 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.05 1.33 6.46 -2.39 -0.02 1.32 16 44 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.42 9.38 8.11 -92.70 -0.75 8.63 16 46 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 47 H 0.10 3.98 8.14 -2.40 -0.02 3.96 16 48 H 0.27 15.68 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -73.76 386.70 0.99 -72.77 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.19 Total: 23.96 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 5.55 Total: -16.90 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -5.56 Total: -88.87 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.05 Total: -27.44 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -73.76 0.99 -72.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151953970.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.494 kcal (2) G-P(sol) polarization free energy of solvation -73.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds