Wall clock time and date at job start Tue Mar 31 2020 11:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47604 * 2 1 4 4 C 1.36943 * 119.99846 * 84.27292 * 3 2 1 5 5 H 1.07999 * 119.99904 * 28.84108 * 4 3 2 6 6 C 1.38809 * 119.99706 * 209.11638 * 4 3 2 7 7 N 1.31618 * 120.00334 * 18.63280 * 6 4 3 8 8 Si 1.86797 * 119.99733 * 198.63168 * 6 4 3 9 9 H 1.48503 * 109.47368 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47160 * 120.00179 * 8 6 4 11 11 H 1.48498 * 109.47041 * 239.99906 * 8 6 4 12 12 C 1.46498 * 120.00095 * 264.27653 * 3 2 1 13 13 H 1.09003 * 109.46860 * 183.52441 * 12 3 2 14 14 C 1.52998 * 109.47430 * 63.52157 * 12 3 2 15 15 C 1.52998 * 109.46760 * 303.51820 * 12 3 2 16 16 N 1.46499 * 109.47758 * 305.00230 * 15 12 3 17 17 C 1.34770 * 120.00144 * 180.02562 * 16 15 12 18 18 O 1.21283 * 120.00169 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.00193 * 179.97438 * 17 16 15 20 20 C 1.47200 * 109.47609 * 179.97438 * 19 17 16 21 21 C 7.48510 * 162.13330 * 232.32275 * 2 1 3 22 22 C 8.76786 * 157.80434 * 228.67917 * 2 1 3 23 23 C 1.39531 * 120.14175 * 113.06413 * 22 21 20 24 24 C 1.37979 * 119.85443 * 179.78795 * 23 22 21 25 25 C 1.38341 * 120.14088 * 0.46648 * 24 23 22 26 26 C 1.38348 * 120.28868 * 359.78432 * 25 24 23 27 27 C 1.37974 * 120.14015 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46770 * 299.99864 * 1 2 3 30 30 H 1.08999 * 109.47057 * 59.99877 * 1 2 3 31 31 H 1.09001 * 109.47350 * 239.99686 * 2 1 3 32 32 H 1.09001 * 109.46755 * 120.00568 * 2 1 3 33 33 H 0.96997 * 119.99939 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46874 * 300.00271 * 14 12 3 35 35 H 1.08999 * 109.46541 * 59.99998 * 14 12 3 36 36 H 1.08996 * 109.46887 * 180.02562 * 14 12 3 37 37 H 1.09004 * 109.46866 * 65.00698 * 15 12 3 38 38 H 1.09006 * 109.47115 * 184.99975 * 15 12 3 39 39 H 0.97000 * 119.99579 * 359.97438 * 16 15 12 40 40 H 1.08993 * 109.46870 * 300.00053 * 19 17 16 41 41 H 1.09006 * 109.46963 * 59.99667 * 19 17 16 42 42 H 1.07995 * 120.07330 * 0.02562 * 23 22 21 43 43 H 1.08002 * 119.92885 * 180.25161 * 24 23 22 44 44 H 1.08006 * 119.85869 * 179.76943 * 25 24 23 45 45 H 1.08001 * 119.92763 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.07215 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1351 2.0661 1.1801 5 1 2.3293 1.5312 2.0980 6 6 1.9982 3.4473 1.1972 7 7 1.4075 4.0626 0.1948 8 14 2.6522 4.4327 2.6431 9 1 3.2675 3.5116 3.6322 10 1 3.6735 5.3980 2.1628 11 1 1.5352 5.1720 3.2840 12 6 2.3819 2.0295 -1.2624 13 1 2.7793 3.0239 -1.0588 14 6 1.1418 2.1479 -2.1506 15 6 3.4441 1.1927 -1.9781 16 7 4.5832 0.9789 -1.0820 17 6 5.6458 0.2641 -1.5016 18 8 5.6590 -0.2027 -2.6210 19 6 6.8178 0.0446 -0.5800 20 6 7.8397 -0.7607 -1.2686 21 6 8.6541 -1.4036 -1.8176 22 6 9.6482 -2.1870 -2.4876 23 6 10.0191 -1.8775 -3.7966 24 6 10.9807 -2.6335 -4.4350 25 6 11.5697 -3.7023 -3.7834 26 6 11.2026 -4.0177 -2.4873 27 6 10.2459 -3.2665 -1.8360 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3122 5.0279 0.2067 34 1 0.7445 1.1534 -2.3541 35 1 0.3853 2.7441 -1.6406 36 1 1.4125 2.6299 -3.0900 37 1 3.0183 0.2298 -2.2607 38 1 3.7790 1.7183 -2.8724 39 1 4.5728 1.3525 -0.1869 40 1 7.2432 1.0076 -0.2976 41 1 6.4833 -0.4811 0.3144 42 1 9.5574 -1.0456 -4.3076 43 1 11.2717 -2.3925 -5.4467 44 1 12.3192 -4.2934 -4.2888 45 1 11.6659 -4.8536 -1.9843 46 1 9.9598 -3.5139 -0.8244 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157069007.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:44 Heat of formation + Delta-G solvation = 49.272463 kcal Electronic energy + Delta-G solvation = -24906.923919 eV Core-core repulsion = 21377.170954 eV Total energy + Delta-G solvation = -3529.752965 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.36206 -39.23092 -36.97418 -34.33694 -33.74602 -31.93003 -31.72371 -31.16328 -30.73774 -28.46152 -28.31363 -25.20461 -23.94529 -23.01990 -22.70097 -21.63462 -20.14680 -19.35181 -18.27590 -17.15220 -16.49468 -16.43338 -15.69197 -15.40489 -15.12312 -14.75059 -14.46259 -14.39019 -13.71314 -13.65694 -13.55054 -13.45267 -13.15970 -13.00746 -12.61867 -12.28297 -11.89987 -11.65052 -11.58690 -11.45767 -11.43802 -11.31486 -11.06049 -10.90932 -10.84935 -10.49996 -10.30479 -10.12100 -9.93932 -9.61482 -9.52187 -9.43981 -9.18855 -8.58849 -8.55063 -8.43177 -6.77298 -5.90318 -3.33912 0.77404 1.17369 2.58201 2.81757 3.03068 3.28765 3.38839 3.39552 3.66430 3.94973 4.11752 4.40308 4.72838 4.73893 4.86973 5.10482 5.20477 5.25467 5.31987 5.33975 5.40596 5.43756 5.45898 5.80341 5.85259 5.90299 6.08965 6.13601 6.21313 6.25675 6.32148 6.33353 6.43352 6.48389 6.54265 6.68869 6.72330 6.72808 6.77216 6.95360 7.04450 7.25184 7.49718 7.56469 7.59362 7.75350 8.09358 8.37361 8.67800 9.12880 9.75450 10.30094 11.16741 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018841 B = 0.002440 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.794258 B =11471.114827 C =12022.686213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.142 3.858 3 N -0.584 5.584 4 C -0.258 4.258 5 H 0.067 0.933 6 C 0.007 3.993 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.292 1.292 12 C 0.177 3.823 13 H 0.103 0.897 14 C -0.144 4.144 15 C 0.102 3.898 16 N -0.701 5.701 17 C 0.508 3.492 18 O -0.551 6.551 19 C -0.030 4.030 20 C -0.120 4.120 21 C -0.149 4.149 22 C 0.028 3.972 23 C -0.096 4.096 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.121 4.121 27 C -0.101 4.101 28 H 0.027 0.973 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.253 0.747 34 H 0.029 0.971 35 H 0.080 0.920 36 H 0.029 0.971 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.412 0.588 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.908 -10.509 -4.206 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.015 3.985 3 N -0.305 5.305 4 C -0.388 4.388 5 H 0.085 0.915 6 C -0.193 4.193 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.216 1.216 11 H -0.219 1.219 12 C 0.070 3.930 13 H 0.121 0.879 14 C -0.203 4.203 15 C -0.023 4.023 16 N -0.352 5.352 17 C 0.293 3.707 18 O -0.430 6.430 19 C -0.069 4.069 20 C -0.120 4.120 21 C -0.149 4.149 22 C 0.028 3.972 23 C -0.114 4.114 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.139 4.139 27 C -0.119 4.119 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.099 0.901 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.249 0.751 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.856 -10.658 -5.007 18.957 hybrid contribution 0.005 0.844 1.175 1.447 sum 14.861 -9.813 -3.831 18.216 Atomic orbital electron populations 1.22397 0.99808 0.98367 1.02090 1.20797 0.91927 0.87610 0.98122 1.44034 1.73791 1.09731 1.02973 1.19194 1.43050 0.89208 0.87305 0.91516 1.25056 0.98947 0.97907 0.97389 1.70023 1.42803 1.08506 1.32228 0.86330 0.78487 0.80219 0.82337 1.20254 1.21591 1.21863 1.20522 0.90936 0.96626 0.84948 0.87911 1.22124 1.00594 0.99552 0.98026 1.22126 0.87091 1.00491 0.92632 1.45902 1.17233 1.53004 1.19085 1.20201 0.83691 0.79026 0.87809 1.90691 1.81001 1.50408 1.20884 1.18693 0.90476 0.99934 0.97790 1.21317 0.95201 0.97163 0.98322 1.18942 0.97489 0.99307 0.99189 1.15895 0.93911 0.94294 0.93056 1.21304 0.96835 0.99769 0.93493 1.21098 0.96790 0.95733 1.00126 1.21250 0.99898 0.97406 0.95050 1.21070 0.97785 0.99843 0.95173 1.21248 0.96242 0.94324 1.00057 0.95362 0.92908 0.93158 0.94432 0.94555 0.93640 0.95178 0.90087 0.95178 0.92867 0.92756 0.75136 0.86390 0.86316 0.85441 0.85587 0.85894 0.85644 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 10.02 37.16 0.37 -2.81 16 2 C 0.14 2.78 5.73 -4.04 -0.02 2.76 16 3 N -0.58 -12.65 1.84 -165.67 -0.30 -12.96 16 4 C -0.26 -6.18 9.50 -15.06 -0.14 -6.32 16 5 H 0.07 1.61 7.90 -52.49 -0.41 1.19 16 6 C 0.01 0.16 4.84 -17.43 -0.08 0.08 16 7 N -0.89 -23.14 10.24 55.49 0.57 -22.57 16 8 Si 0.90 19.80 29.59 -169.99 -5.03 14.77 16 9 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.18 3.70 1.93 -67.93 -0.13 3.57 16 13 H 0.10 2.44 5.93 -51.93 -0.31 2.13 16 14 C -0.14 -2.93 8.25 37.16 0.31 -2.62 16 15 C 0.10 1.92 4.85 -4.04 -0.02 1.90 16 16 N -0.70 -12.07 5.39 -60.29 -0.32 -12.39 16 17 C 0.51 8.62 7.81 -10.99 -0.09 8.54 16 18 O -0.55 -11.49 16.03 5.56 0.09 -11.40 16 19 C -0.03 -0.39 6.19 -30.67 -0.19 -0.58 16 20 C -0.12 -1.79 12.58 -37.12 -0.47 -2.26 16 21 C -0.15 -2.24 13.24 -38.84 -0.51 -2.75 16 22 C 0.03 0.37 5.72 -107.00 -0.61 -0.24 16 23 C -0.10 -1.12 9.75 -39.19 -0.38 -1.50 16 24 C -0.12 -1.10 10.03 -39.64 -0.40 -1.50 16 25 C -0.12 -0.98 10.04 -39.50 -0.40 -1.38 16 26 C -0.12 -1.05 10.03 -39.64 -0.40 -1.45 16 27 C -0.10 -1.08 9.75 -39.19 -0.38 -1.46 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.99 6.03 -51.93 -0.31 0.67 16 31 H 0.04 0.71 6.35 -51.93 -0.33 0.38 16 32 H 0.04 0.70 8.09 -51.93 -0.42 0.28 16 33 H 0.25 6.49 8.31 -40.82 -0.34 6.15 16 34 H 0.03 0.57 6.50 -51.93 -0.34 0.23 16 35 H 0.08 1.88 7.22 -51.93 -0.37 1.51 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 1.04 6.76 -51.93 -0.35 0.68 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.41 6.94 8.08 -40.82 -0.33 6.61 16 40 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 45 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 385.00 15.07 5.80 5.80 Total: -1.00 -29.25 385.00 -9.71 -38.96 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.96 Total: 7.81 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -3.55 Total: -8.04 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.06 Total: -47.92 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.25 -9.71 -38.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157069007.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.237 kcal (2) G-P(sol) polarization free energy of solvation -29.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds