Wall clock time and date at job start Tue Mar 31 2020 11:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47604 * 2 1 4 4 C 1.36943 * 119.99846 * 84.27292 * 3 2 1 5 5 H 1.07999 * 119.99904 * 28.84108 * 4 3 2 6 6 C 1.38809 * 119.99706 * 209.11638 * 4 3 2 7 7 N 1.31618 * 120.00334 * 18.63280 * 6 4 3 8 8 Si 1.86797 * 119.99733 * 198.63168 * 6 4 3 9 9 H 1.48503 * 109.47368 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47160 * 120.00179 * 8 6 4 11 11 H 1.48498 * 109.47041 * 239.99906 * 8 6 4 12 12 C 1.46498 * 120.00095 * 264.27653 * 3 2 1 13 13 H 1.09003 * 109.46860 * 183.52441 * 12 3 2 14 14 C 1.52998 * 109.47430 * 63.52157 * 12 3 2 15 15 C 1.52998 * 109.46760 * 303.51820 * 12 3 2 16 16 N 1.46499 * 109.47758 * 305.00230 * 15 12 3 17 17 C 1.34770 * 120.00144 * 180.02562 * 16 15 12 18 18 O 1.21283 * 120.00169 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.00193 * 179.97438 * 17 16 15 20 20 C 1.47200 * 109.47609 * 179.97438 * 19 17 16 21 21 C 7.48510 * 162.13330 * 232.32275 * 2 1 3 22 22 C 8.76786 * 157.80434 * 228.67917 * 2 1 3 23 23 C 1.39531 * 120.14175 * 113.06413 * 22 21 20 24 24 C 1.37979 * 119.85443 * 179.78795 * 23 22 21 25 25 C 1.38341 * 120.14088 * 0.46648 * 24 23 22 26 26 C 1.38348 * 120.28868 * 359.78432 * 25 24 23 27 27 C 1.37974 * 120.14015 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46770 * 299.99864 * 1 2 3 30 30 H 1.08999 * 109.47057 * 59.99877 * 1 2 3 31 31 H 1.09001 * 109.47350 * 239.99686 * 2 1 3 32 32 H 1.09001 * 109.46755 * 120.00568 * 2 1 3 33 33 H 0.96997 * 119.99939 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46874 * 300.00271 * 14 12 3 35 35 H 1.08999 * 109.46541 * 59.99998 * 14 12 3 36 36 H 1.08996 * 109.46887 * 180.02562 * 14 12 3 37 37 H 1.09004 * 109.46866 * 65.00698 * 15 12 3 38 38 H 1.09006 * 109.47115 * 184.99975 * 15 12 3 39 39 H 0.97000 * 119.99579 * 359.97438 * 16 15 12 40 40 H 1.08993 * 109.46870 * 300.00053 * 19 17 16 41 41 H 1.09006 * 109.46963 * 59.99667 * 19 17 16 42 42 H 1.07995 * 120.07330 * 0.02562 * 23 22 21 43 43 H 1.08002 * 119.92885 * 180.25161 * 24 23 22 44 44 H 1.08006 * 119.85869 * 179.76943 * 25 24 23 45 45 H 1.08001 * 119.92763 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.07215 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1351 2.0661 1.1801 5 1 2.3293 1.5312 2.0980 6 6 1.9982 3.4473 1.1972 7 7 1.4075 4.0626 0.1948 8 14 2.6522 4.4327 2.6431 9 1 3.2675 3.5116 3.6322 10 1 3.6735 5.3980 2.1628 11 1 1.5352 5.1720 3.2840 12 6 2.3819 2.0295 -1.2624 13 1 2.7793 3.0239 -1.0588 14 6 1.1418 2.1479 -2.1506 15 6 3.4441 1.1927 -1.9781 16 7 4.5832 0.9789 -1.0820 17 6 5.6458 0.2641 -1.5016 18 8 5.6590 -0.2027 -2.6210 19 6 6.8178 0.0446 -0.5800 20 6 7.8397 -0.7607 -1.2686 21 6 8.6541 -1.4036 -1.8176 22 6 9.6482 -2.1870 -2.4876 23 6 10.0191 -1.8775 -3.7966 24 6 10.9807 -2.6335 -4.4350 25 6 11.5697 -3.7023 -3.7834 26 6 11.2026 -4.0177 -2.4873 27 6 10.2459 -3.2665 -1.8360 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3122 5.0279 0.2067 34 1 0.7445 1.1534 -2.3541 35 1 0.3853 2.7441 -1.6406 36 1 1.4125 2.6299 -3.0900 37 1 3.0183 0.2298 -2.2607 38 1 3.7790 1.7183 -2.8724 39 1 4.5728 1.3525 -0.1869 40 1 7.2432 1.0076 -0.2976 41 1 6.4833 -0.4811 0.3144 42 1 9.5574 -1.0456 -4.3076 43 1 11.2717 -2.3925 -5.4467 44 1 12.3192 -4.2934 -4.2888 45 1 11.6659 -4.8536 -1.9843 46 1 9.9598 -3.5139 -0.8244 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157069007.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:43 Heat of formation + Delta-G solvation = 35.207036 kcal Electronic energy + Delta-G solvation = -24907.533842 eV Core-core repulsion = 21377.170954 eV Total energy + Delta-G solvation = -3530.362888 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.73992 -40.03361 -38.63017 -35.44952 -35.21742 -33.71463 -32.86906 -32.12305 -31.90007 -30.08972 -29.50627 -26.71577 -25.71696 -23.87741 -23.43987 -23.26904 -21.50995 -21.02865 -19.22216 -18.78929 -17.90734 -17.42565 -16.84453 -16.72224 -16.44450 -16.04832 -15.89094 -15.55717 -15.23361 -14.85072 -14.49805 -14.44850 -14.36177 -14.28102 -14.02312 -13.78721 -13.54479 -13.23441 -13.05744 -12.97124 -12.79648 -12.60571 -12.34749 -12.22840 -12.17272 -12.02827 -11.88762 -11.70525 -11.27249 -11.23515 -11.20797 -10.80406 -10.42601 -9.93383 -9.93233 -9.42362 -8.57679 -7.78360 -5.22544 -0.06238 0.43002 1.46814 1.51834 1.58248 1.64618 1.65557 1.87509 2.50256 2.59315 3.02049 3.08186 3.36980 3.65918 3.94104 4.02880 4.05199 4.21914 4.26380 4.37097 4.46057 4.48679 4.48949 4.54783 4.56437 4.64015 4.75247 4.86422 4.89781 4.92457 5.04568 5.06512 5.09065 5.11500 5.18523 5.35095 5.46807 5.53326 5.53662 5.54372 5.62096 5.77855 5.78437 5.93538 6.00859 6.48012 6.51291 6.71864 7.26229 7.31780 7.96372 8.46620 9.26728 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018841 B = 0.002440 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.794258 B =11471.114827 C =12022.686213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 N -0.590 5.590 4 C -0.253 4.253 5 H 0.067 0.933 6 C -0.038 4.038 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.266 1.266 10 H -0.293 1.293 11 H -0.306 1.306 12 C 0.184 3.816 13 H 0.075 0.925 14 C -0.134 4.134 15 C 0.115 3.885 16 N -0.698 5.698 17 C 0.509 3.491 18 O -0.593 6.593 19 C -0.020 4.020 20 C -0.149 4.149 21 C -0.161 4.161 22 C -0.011 4.011 23 C -0.115 4.115 24 C -0.121 4.121 25 C -0.111 4.111 26 C -0.119 4.119 27 C -0.109 4.109 28 H 0.057 0.943 29 H 0.030 0.970 30 H 0.040 0.960 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.246 0.754 34 H 0.040 0.960 35 H 0.050 0.950 36 H 0.042 0.958 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.416 0.584 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.117 0.883 43 H 0.150 0.850 44 H 0.157 0.843 45 H 0.156 0.844 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.863 -12.435 -3.899 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.015 3.985 3 N -0.312 5.312 4 C -0.383 4.383 5 H 0.085 0.915 6 C -0.234 4.234 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.190 1.190 10 H -0.220 1.220 11 H -0.234 1.234 12 C 0.077 3.923 13 H 0.093 0.907 14 C -0.193 4.193 15 C -0.011 4.011 16 N -0.348 5.348 17 C 0.296 3.704 18 O -0.475 6.475 19 C -0.058 4.058 20 C -0.150 4.150 21 C -0.161 4.161 22 C -0.011 4.011 23 C -0.133 4.133 24 C -0.139 4.139 25 C -0.128 4.128 26 C -0.137 4.137 27 C -0.127 4.127 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.253 0.747 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.135 0.865 43 H 0.168 0.832 44 H 0.175 0.825 45 H 0.174 0.826 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 16.821 -12.601 -4.677 21.531 hybrid contribution -0.554 1.334 1.020 1.768 sum 16.266 -11.267 -3.656 20.123 Atomic orbital electron populations 1.22278 0.99253 0.99771 1.00462 1.20878 0.92282 0.86465 0.98849 1.44135 1.74097 1.10307 1.02645 1.19370 1.41602 0.89322 0.87991 0.91489 1.25603 0.99744 0.98817 0.99268 1.70162 1.44310 1.08015 1.33748 0.85448 0.77208 0.78868 0.80239 1.18995 1.22046 1.23411 1.20348 0.91474 0.95552 0.84952 0.90673 1.21976 0.99594 0.99623 0.98130 1.21832 0.87098 0.99673 0.92536 1.45845 1.16993 1.53079 1.18912 1.20835 0.84166 0.77694 0.87700 1.90672 1.81832 1.52013 1.22948 1.18760 0.88315 1.01510 0.97211 1.21837 0.96180 0.97892 0.99079 1.19695 0.97863 0.99576 0.98949 1.16200 0.95057 0.95778 0.94025 1.21396 0.98083 1.00412 0.93452 1.21414 0.95822 0.95512 1.01151 1.21703 0.99573 0.96718 0.94852 1.21468 0.96756 1.00001 0.95439 1.21446 0.96681 0.93957 1.00580 0.92431 0.95088 0.94132 0.93502 0.93912 0.94445 0.94139 0.93129 0.93886 0.93217 0.92940 0.74723 0.83577 0.83534 0.86470 0.83234 0.82524 0.82620 0.84925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.84 10.02 71.98 0.72 -5.12 16 2 C 0.14 5.34 5.73 86.38 0.49 5.84 16 3 N -0.59 -25.27 1.84 -678.05 -1.25 -26.52 16 4 C -0.25 -11.96 9.50 84.03 0.80 -11.16 16 5 H 0.07 3.15 7.90 -2.91 -0.02 3.13 16 6 C -0.04 -1.86 4.84 84.86 0.41 -1.45 16 7 N -0.92 -48.40 10.24 21.65 0.22 -48.18 16 8 Si 0.95 40.84 29.59 68.60 2.03 42.87 16 9 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 10 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.31 -13.78 7.11 99.48 0.71 -13.08 16 12 C 0.18 7.69 1.93 44.99 0.09 7.78 16 13 H 0.08 3.62 5.93 -2.39 -0.01 3.61 16 14 C -0.13 -5.47 8.25 71.98 0.59 -4.88 16 15 C 0.11 4.27 4.85 86.38 0.42 4.69 16 16 N -0.70 -23.49 5.39 -463.05 -2.49 -25.98 16 17 C 0.51 16.98 7.81 87.66 0.68 17.67 16 18 O -0.59 -24.92 16.03 -3.04 -0.05 -24.97 16 19 C -0.02 -0.48 6.19 28.04 0.17 -0.31 16 20 C -0.15 -4.49 12.58 31.13 0.39 -4.09 16 21 C -0.16 -4.93 13.24 30.02 0.40 -4.53 16 22 C -0.01 -0.28 5.72 -21.41 -0.12 -0.40 16 23 C -0.12 -2.71 9.75 22.52 0.22 -2.49 16 24 C -0.12 -2.03 10.03 22.23 0.22 -1.81 16 25 C -0.11 -1.50 10.04 22.32 0.22 -1.28 16 26 C -0.12 -1.76 10.03 22.23 0.22 -1.54 16 27 C -0.11 -2.23 9.75 22.52 0.22 -2.01 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 1.55 6.03 -2.39 -0.01 1.54 16 31 H 0.05 1.70 6.35 -2.39 -0.02 1.68 16 32 H 0.04 1.57 8.09 -2.39 -0.02 1.55 16 33 H 0.25 12.91 8.31 -92.71 -0.77 12.14 16 34 H 0.04 1.53 6.50 -2.39 -0.02 1.51 16 35 H 0.05 2.38 7.22 -2.39 -0.02 2.36 16 36 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.05 1.90 6.76 -2.38 -0.02 1.88 16 38 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 39 H 0.42 13.54 8.08 -92.71 -0.75 12.79 16 40 H 0.15 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.15 2.77 8.14 -2.38 -0.02 2.75 16 42 H 0.12 2.83 8.06 -2.91 -0.02 2.81 16 43 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 44 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 45 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 46 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -64.46 385.00 4.85 -59.60 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.23 Total: 28.26 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 6.16 Total: -5.08 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -3.52 Total: -100.68 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.05 Total: -24.97 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -64.46 4.85 -59.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157069007.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.812 kcal (2) G-P(sol) polarization free energy of solvation -64.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds