Wall clock time and date at job start Tue Mar 31 2020 11:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81392 * 109.47179 * 2 1 4 4 C 1.81400 * 102.99868 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47248 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47520 * 175.58879 * 5 4 3 7 7 O 1.21279 * 119.99848 * 4.12986 * 6 5 4 8 8 N 1.34776 * 120.00124 * 184.14123 * 6 5 4 9 9 C 1.46925 * 120.63060 * 4.59980 * 8 6 5 10 10 C 1.53192 * 108.77421 * 233.59022 * 9 8 6 11 11 C 1.53044 * 109.31180 * 305.36511 * 10 9 8 12 12 C 1.53041 * 109.53703 * 61.36544 * 11 10 9 13 13 C 1.46919 * 120.62939 * 184.32406 * 8 6 5 14 14 H 1.09002 * 109.58864 * 246.20013 * 13 8 6 15 15 C 1.52999 * 109.58756 * 6.62134 * 13 8 6 16 16 N 1.46501 * 109.47384 * 176.71763 * 15 13 8 17 17 C 1.46499 * 120.00656 * 265.20309 * 16 15 13 18 18 C 1.36943 * 119.99768 * 85.19996 * 16 15 13 19 19 H 1.07998 * 120.00135 * 321.86738 * 18 16 15 20 20 C 1.38810 * 119.99960 * 141.86203 * 18 16 15 21 21 N 1.31623 * 119.99787 * 160.46390 * 20 18 16 22 22 Si 1.86794 * 120.00316 * 340.46444 * 20 18 16 23 23 H 1.48499 * 109.47110 * 95.44834 * 22 20 18 24 24 H 1.48494 * 109.47274 * 215.45214 * 22 20 18 25 25 H 1.48498 * 109.46946 * 335.45284 * 22 20 18 26 26 H 1.08996 * 109.47004 * 299.99985 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00089 * 1 2 3 28 28 H 1.09002 * 109.47456 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46929 * 240.00051 * 2 1 3 30 30 H 1.08997 * 109.47024 * 120.00366 * 2 1 3 31 31 H 1.08992 * 109.47678 * 60.00040 * 4 3 2 32 32 H 1.09000 * 109.47075 * 300.00099 * 4 3 2 33 33 H 1.09008 * 109.46615 * 295.58610 * 5 4 3 34 34 H 1.08996 * 109.47494 * 55.58131 * 5 4 3 35 35 H 1.09001 * 109.58483 * 353.37621 * 9 8 6 36 36 H 1.08997 * 109.58662 * 113.66116 * 9 8 6 37 37 H 1.08993 * 109.50137 * 65.31674 * 10 9 8 38 38 H 1.09000 * 109.49448 * 185.41533 * 10 9 8 39 39 H 1.08996 * 109.46022 * 181.39107 * 11 10 9 40 40 H 1.08997 * 109.45691 * 301.35885 * 11 10 9 41 41 H 1.08999 * 109.49537 * 58.58691 * 12 11 10 42 42 H 1.09003 * 109.49348 * 178.65443 * 12 11 10 43 43 H 1.08998 * 109.47319 * 296.72040 * 15 13 8 44 44 H 1.09001 * 109.47357 * 56.71952 * 15 13 8 45 45 H 1.09001 * 109.47018 * 92.15186 * 17 16 15 46 46 H 1.08996 * 109.47284 * 212.16113 * 17 16 15 47 47 H 1.09000 * 109.46465 * 332.15568 * 17 16 15 48 48 H 0.97000 * 119.99960 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5057 0.0008 5 6 4.6065 2.8815 0.0015 6 6 6.1001 2.7135 0.1114 7 8 6.5873 1.6029 0.1068 8 7 6.8944 3.7974 0.2152 9 6 6.3143 5.1429 0.3237 10 6 6.9256 6.0325 -0.7634 11 6 8.4513 5.9947 -0.6496 12 6 8.9452 4.5620 -0.8635 13 6 8.3566 3.6554 0.2280 14 1 8.7442 3.9530 1.2024 15 6 8.7331 2.1995 -0.0538 16 7 10.1914 2.0757 -0.1181 17 6 10.8759 2.1413 -1.4117 18 6 10.9149 1.8988 1.0311 19 1 10.6300 2.4184 1.9339 20 6 12.0144 1.0515 1.0355 21 7 12.9249 1.1599 1.9797 22 14 12.2017 -0.2426 -0.2985 23 1 13.0703 0.2848 -1.3813 24 1 12.8176 -1.4639 0.2796 25 1 10.8660 -0.5774 -0.8543 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 4.2407 0.9541 -0.8889 32 1 4.2398 0.9543 0.8910 33 1 4.3668 3.4026 -0.9254 34 1 4.2428 3.4621 0.8492 35 1 5.2344 5.0874 0.1860 36 1 6.5365 5.5584 1.3065 37 1 6.6248 5.6662 -1.7449 38 1 6.5763 7.0569 -0.6341 39 1 8.8881 6.6463 -1.4063 40 1 8.7501 6.3375 0.3410 41 1 8.6253 4.2097 -1.8442 42 1 10.0334 4.5401 -0.8061 43 1 8.3494 1.5639 0.7443 44 1 8.2999 1.8897 -1.0049 45 1 11.1704 3.1709 -1.6151 46 1 11.7626 1.5080 -1.3861 47 1 10.2038 1.7939 -2.1963 48 1 13.6935 0.5681 1.9826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157608868.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:33 Heat of formation + Delta-G solvation = -8.166429 kcal Electronic energy + Delta-G solvation = -25196.802088 eV Core-core repulsion = 21800.002337 eV Total energy + Delta-G solvation = -3396.799751 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.35899 -37.36685 -35.70970 -33.34605 -33.07858 -32.56345 -31.80261 -30.52674 -27.20266 -25.84314 -25.24334 -24.29912 -23.43872 -22.28914 -20.57486 -20.44914 -18.75088 -17.20861 -16.50509 -16.17940 -16.04818 -15.60394 -15.21376 -15.09214 -14.65933 -14.42911 -14.32698 -13.90573 -13.69874 -13.30737 -13.26126 -12.98639 -12.81222 -12.72886 -12.38314 -12.28322 -12.17799 -11.85825 -11.69594 -11.55097 -11.43602 -11.36327 -10.96655 -10.80306 -10.61019 -10.43656 -10.37745 -10.18318 -10.09404 -9.86760 -9.57802 -8.85694 -8.42965 -8.26931 -7.91330 -6.68066 -5.90638 -3.33637 1.37656 2.34016 2.79321 3.18532 3.37610 3.53525 3.62582 4.54817 4.60945 4.61292 4.61455 4.67106 4.77930 4.79755 4.91110 5.05946 5.07105 5.25780 5.28448 5.32711 5.39870 5.44804 5.45487 5.49036 5.51874 5.54058 5.72840 5.73235 5.79153 5.86811 5.91365 6.06363 6.09920 6.29580 6.32823 6.39216 6.50718 6.59657 6.71916 6.88571 6.90396 7.31283 7.63680 8.14821 8.35871 8.50846 9.10214 9.80840 10.22674 11.25238 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.013342 B = 0.003601 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.115761 B = 7772.868221 C = 9350.339774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 S -0.274 6.274 4 C -0.065 4.065 5 C -0.124 4.124 6 C 0.513 3.487 7 O -0.524 6.524 8 N -0.605 5.605 9 C 0.106 3.894 10 C -0.133 4.133 11 C -0.121 4.121 12 C -0.122 4.122 13 C 0.125 3.875 14 H 0.072 0.928 15 C 0.163 3.837 16 N -0.613 5.613 17 C 0.112 3.888 18 C -0.263 4.263 19 H 0.077 0.923 20 C 0.032 3.968 21 N -0.907 5.907 22 Si 0.890 3.110 23 H -0.289 1.289 24 H -0.305 1.305 25 H -0.270 1.270 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.014 0.986 46 H 0.037 0.963 47 H 0.028 0.972 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.214 6.928 -6.137 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.235 4.235 3 S -0.048 6.048 4 C -0.214 4.214 5 C -0.165 4.165 6 C 0.299 3.701 7 O -0.400 6.400 8 N -0.339 5.339 9 C -0.018 4.018 10 C -0.171 4.171 11 C -0.159 4.159 12 C -0.160 4.160 13 C 0.021 3.979 14 H 0.090 0.910 15 C 0.037 3.963 16 N -0.338 5.338 17 C -0.033 4.033 18 C -0.392 4.392 19 H 0.095 0.905 20 C -0.168 4.168 21 N -0.549 5.549 22 Si 0.721 3.279 23 H -0.217 1.217 24 H -0.233 1.233 25 H -0.195 1.195 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.062 0.938 45 H 0.032 0.968 46 H 0.056 0.944 47 H 0.047 0.953 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.403 7.162 -6.069 24.290 hybrid contribution 1.027 -1.605 -0.708 2.033 sum -21.375 5.557 -6.777 23.102 Atomic orbital electron populations 1.21515 0.92260 1.02524 1.03136 1.23284 1.00024 0.95015 1.05202 1.86689 1.06391 1.13520 1.98224 1.23082 0.91448 1.00150 1.06712 1.21422 0.92872 0.97296 1.04947 1.20376 0.88239 0.84695 0.76781 1.90814 1.74801 1.24934 1.49423 1.48317 1.07451 1.05784 1.72366 1.21735 0.97866 0.82841 0.99318 1.21900 0.96814 0.99283 0.99085 1.21553 0.94638 0.97779 1.01903 1.22011 1.02134 0.93486 0.98418 1.22400 0.76061 1.00630 0.98821 0.90950 1.21458 0.82926 0.90791 1.01158 1.44326 1.01563 1.84827 1.03087 1.21377 0.96082 0.98148 0.87658 1.18751 1.08766 1.21707 0.89976 0.90515 1.25471 0.97106 0.97542 0.96704 1.69850 1.10544 1.39005 1.35515 0.86739 0.77836 0.81929 0.81378 1.21737 1.23316 1.19522 0.91682 0.91728 0.91109 0.89999 0.89931 0.89237 0.89047 0.88315 0.88432 0.90133 0.91321 0.91734 0.91162 0.92160 0.91877 0.92612 0.89506 0.90244 0.93756 0.96750 0.94445 0.95324 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.92 37.16 0.37 -0.52 16 2 C -0.09 -0.71 6.66 37.16 0.25 -0.46 16 3 S -0.27 -2.76 21.74 -107.50 -2.34 -5.09 16 4 C -0.07 -0.72 5.25 37.16 0.19 -0.53 16 5 C -0.12 -1.31 4.10 -27.88 -0.11 -1.43 16 6 C 0.51 7.57 7.54 -10.99 -0.08 7.49 16 7 O -0.52 -9.87 11.50 5.56 0.06 -9.81 16 8 N -0.60 -8.62 2.97 -164.97 -0.49 -9.11 16 9 C 0.11 1.08 6.32 -3.71 -0.02 1.06 16 10 C -0.13 -1.29 6.08 -26.61 -0.16 -1.45 16 11 C -0.12 -1.47 5.88 -26.69 -0.16 -1.62 16 12 C -0.12 -1.92 4.58 -26.39 -0.12 -2.04 16 13 C 0.13 2.22 3.21 -67.38 -0.22 2.00 16 14 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 15 C 0.16 3.55 3.66 -4.04 -0.01 3.53 16 16 N -0.61 -15.20 2.08 -181.12 -0.38 -15.57 16 17 C 0.11 2.55 8.76 59.85 0.52 3.07 16 18 C -0.26 -7.58 9.94 -15.06 -0.15 -7.73 16 19 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 20 C 0.03 0.94 5.36 -17.43 -0.09 0.85 16 21 N -0.91 -28.42 13.97 55.49 0.78 -27.65 16 22 Si 0.89 23.55 24.86 -169.99 -4.23 19.32 16 23 H -0.29 -7.38 6.72 56.52 0.38 -7.00 16 24 H -0.30 -8.14 7.11 56.52 0.40 -7.74 16 25 H -0.27 -7.17 7.11 56.52 0.40 -6.77 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.11 8.03 -51.92 -0.42 0.69 16 33 H 0.10 0.90 8.04 -51.92 -0.42 0.49 16 34 H 0.10 0.90 7.53 -51.93 -0.39 0.50 16 35 H 0.08 0.63 5.92 -51.93 -0.31 0.32 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.09 1.57 6.19 -51.93 -0.32 1.25 16 43 H 0.08 1.94 6.32 -51.93 -0.33 1.62 16 44 H 0.04 0.97 6.78 -51.93 -0.35 0.62 16 45 H 0.01 0.31 6.74 -51.93 -0.35 -0.04 16 46 H 0.04 0.92 3.02 -51.93 -0.16 0.76 16 47 H 0.03 0.58 7.83 -51.93 -0.41 0.18 16 48 H 0.26 7.77 8.31 -40.82 -0.34 7.44 16 LS Contribution 373.92 15.07 5.63 5.63 Total: -1.00 -32.86 373.92 -9.28 -42.14 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -8.52 Total: -2.08 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 0.20 Total: 2.21 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.09 Total: -52.33 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.06 Total: -9.81 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -4.23 Total: 19.32 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -2.34 Total: -5.09 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.86 -9.28 -42.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157608868.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.971 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds