Wall clock time and date at job start Tue Mar 31 2020 11:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81392 * 109.47179 * 2 1 4 4 C 1.81400 * 102.99868 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47248 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47520 * 175.58879 * 5 4 3 7 7 O 1.21279 * 119.99848 * 4.12986 * 6 5 4 8 8 N 1.34776 * 120.00124 * 184.14123 * 6 5 4 9 9 C 1.46925 * 120.63060 * 4.59980 * 8 6 5 10 10 C 1.53192 * 108.77421 * 233.59022 * 9 8 6 11 11 C 1.53044 * 109.31180 * 305.36511 * 10 9 8 12 12 C 1.53041 * 109.53703 * 61.36544 * 11 10 9 13 13 C 1.46919 * 120.62939 * 184.32406 * 8 6 5 14 14 H 1.09002 * 109.58864 * 246.20013 * 13 8 6 15 15 C 1.52999 * 109.58756 * 6.62134 * 13 8 6 16 16 N 1.46501 * 109.47384 * 176.71763 * 15 13 8 17 17 C 1.46499 * 120.00656 * 265.20309 * 16 15 13 18 18 C 1.36943 * 119.99768 * 85.19996 * 16 15 13 19 19 H 1.07998 * 120.00135 * 321.86738 * 18 16 15 20 20 C 1.38810 * 119.99960 * 141.86203 * 18 16 15 21 21 N 1.31623 * 119.99787 * 160.46390 * 20 18 16 22 22 Si 1.86794 * 120.00316 * 340.46444 * 20 18 16 23 23 H 1.48499 * 109.47110 * 95.44834 * 22 20 18 24 24 H 1.48494 * 109.47274 * 215.45214 * 22 20 18 25 25 H 1.48498 * 109.46946 * 335.45284 * 22 20 18 26 26 H 1.08996 * 109.47004 * 299.99985 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00089 * 1 2 3 28 28 H 1.09002 * 109.47456 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46929 * 240.00051 * 2 1 3 30 30 H 1.08997 * 109.47024 * 120.00366 * 2 1 3 31 31 H 1.08992 * 109.47678 * 60.00040 * 4 3 2 32 32 H 1.09000 * 109.47075 * 300.00099 * 4 3 2 33 33 H 1.09008 * 109.46615 * 295.58610 * 5 4 3 34 34 H 1.08996 * 109.47494 * 55.58131 * 5 4 3 35 35 H 1.09001 * 109.58483 * 353.37621 * 9 8 6 36 36 H 1.08997 * 109.58662 * 113.66116 * 9 8 6 37 37 H 1.08993 * 109.50137 * 65.31674 * 10 9 8 38 38 H 1.09000 * 109.49448 * 185.41533 * 10 9 8 39 39 H 1.08996 * 109.46022 * 181.39107 * 11 10 9 40 40 H 1.08997 * 109.45691 * 301.35885 * 11 10 9 41 41 H 1.08999 * 109.49537 * 58.58691 * 12 11 10 42 42 H 1.09003 * 109.49348 * 178.65443 * 12 11 10 43 43 H 1.08998 * 109.47319 * 296.72040 * 15 13 8 44 44 H 1.09001 * 109.47357 * 56.71952 * 15 13 8 45 45 H 1.09001 * 109.47018 * 92.15186 * 17 16 15 46 46 H 1.08996 * 109.47284 * 212.16113 * 17 16 15 47 47 H 1.09000 * 109.46465 * 332.15568 * 17 16 15 48 48 H 0.97000 * 119.99960 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5057 0.0008 5 6 4.6065 2.8815 0.0015 6 6 6.1001 2.7135 0.1114 7 8 6.5873 1.6029 0.1068 8 7 6.8944 3.7974 0.2152 9 6 6.3143 5.1429 0.3237 10 6 6.9256 6.0325 -0.7634 11 6 8.4513 5.9947 -0.6496 12 6 8.9452 4.5620 -0.8635 13 6 8.3566 3.6554 0.2280 14 1 8.7442 3.9530 1.2024 15 6 8.7331 2.1995 -0.0538 16 7 10.1914 2.0757 -0.1181 17 6 10.8759 2.1413 -1.4117 18 6 10.9149 1.8988 1.0311 19 1 10.6300 2.4184 1.9339 20 6 12.0144 1.0515 1.0355 21 7 12.9249 1.1599 1.9797 22 14 12.2017 -0.2426 -0.2985 23 1 13.0703 0.2848 -1.3813 24 1 12.8176 -1.4639 0.2796 25 1 10.8660 -0.5774 -0.8543 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 4.2407 0.9541 -0.8889 32 1 4.2398 0.9543 0.8910 33 1 4.3668 3.4026 -0.9254 34 1 4.2428 3.4621 0.8492 35 1 5.2344 5.0874 0.1860 36 1 6.5365 5.5584 1.3065 37 1 6.6248 5.6662 -1.7449 38 1 6.5763 7.0569 -0.6341 39 1 8.8881 6.6463 -1.4063 40 1 8.7501 6.3375 0.3410 41 1 8.6253 4.2097 -1.8442 42 1 10.0334 4.5401 -0.8061 43 1 8.3494 1.5639 0.7443 44 1 8.2999 1.8897 -1.0049 45 1 11.1704 3.1709 -1.6151 46 1 11.7626 1.5080 -1.3861 47 1 10.2038 1.7939 -2.1963 48 1 13.6935 0.5681 1.9826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157608868.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:32 Heat of formation + Delta-G solvation = -27.596125 kcal Electronic energy + Delta-G solvation = -25197.644623 eV Core-core repulsion = 21800.002337 eV Total energy + Delta-G solvation = -3397.642286 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.58114 -38.62593 -37.46475 -34.57949 -33.82641 -33.66403 -33.50866 -31.99721 -28.69112 -27.69332 -26.54103 -25.30386 -24.27535 -23.66305 -22.14622 -21.63295 -19.87873 -18.99349 -17.97004 -17.33717 -17.18129 -16.97583 -16.71551 -15.97008 -15.74974 -15.43458 -15.28766 -15.26143 -14.88454 -14.85056 -14.59844 -14.40028 -14.25314 -14.13739 -13.86342 -13.62521 -13.12620 -13.04719 -12.93998 -12.60003 -12.54819 -12.33887 -12.24677 -12.18354 -12.07071 -11.89724 -11.80669 -11.63634 -11.60675 -11.43743 -10.96598 -10.67495 -10.22057 -9.50877 -8.74179 -8.69552 -8.22066 -5.62174 0.59499 1.24820 1.37268 1.50114 1.56528 1.64807 2.05368 2.38947 3.06040 3.43770 3.60845 3.74084 3.89789 3.93650 3.96119 4.01161 4.06035 4.07947 4.16457 4.36478 4.40146 4.48694 4.50565 4.53095 4.61753 4.66992 4.70812 4.74947 4.83152 4.87488 4.88416 4.89125 4.91485 5.05573 5.06770 5.14610 5.19583 5.22577 5.28301 5.36405 5.48870 5.72070 5.92368 6.13254 6.50771 6.95658 7.24249 7.61734 8.03877 8.97877 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.013342 B = 0.003601 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.115761 B = 7772.868221 C = 9350.339774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 S -0.276 6.276 4 C -0.064 4.064 5 C -0.109 4.109 6 C 0.506 3.494 7 O -0.574 6.574 8 N -0.604 5.604 9 C 0.099 3.901 10 C -0.125 4.125 11 C -0.118 4.118 12 C -0.114 4.114 13 C 0.135 3.865 14 H 0.043 0.957 15 C 0.173 3.827 16 N -0.625 5.625 17 C 0.111 3.889 18 C -0.253 4.253 19 H 0.040 0.960 20 C -0.024 4.024 21 N -0.951 5.951 22 Si 0.955 3.045 23 H -0.270 1.270 24 H -0.308 1.308 25 H -0.272 1.272 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.044 0.956 44 H 0.046 0.954 45 H 0.033 0.967 46 H 0.022 0.978 47 H 0.053 0.947 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.839 8.395 -8.225 27.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.236 4.236 3 S -0.050 6.050 4 C -0.212 4.212 5 C -0.150 4.150 6 C 0.294 3.706 7 O -0.453 6.453 8 N -0.338 5.338 9 C -0.023 4.023 10 C -0.163 4.163 11 C -0.156 4.156 12 C -0.152 4.152 13 C 0.030 3.970 14 H 0.061 0.939 15 C 0.048 3.952 16 N -0.351 5.351 17 C -0.033 4.033 18 C -0.383 4.383 19 H 0.057 0.943 20 C -0.219 4.219 21 N -0.596 5.596 22 Si 0.785 3.215 23 H -0.197 1.197 24 H -0.236 1.236 25 H -0.197 1.197 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.121 0.879 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.051 0.949 46 H 0.040 0.960 47 H 0.071 0.929 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.075 8.683 -8.182 27.768 hybrid contribution 1.738 -2.030 0.004 2.672 sum -23.337 6.653 -8.178 25.608 Atomic orbital electron populations 1.21519 0.90833 1.03618 1.03117 1.23413 1.01162 0.93649 1.05401 1.86621 1.04888 1.15273 1.98198 1.22967 0.92695 1.00245 1.05327 1.21380 0.89030 0.97481 1.07059 1.21169 0.90053 0.83892 0.75516 1.90795 1.76009 1.26879 1.51646 1.48376 1.05747 1.07798 1.71856 1.22103 0.99706 0.80415 1.00060 1.21887 0.94430 1.00995 0.98979 1.21538 0.96880 0.95036 1.02116 1.21878 1.00240 0.95675 0.97442 1.21849 0.78929 0.98072 0.98187 0.93871 1.21321 0.80944 0.93049 0.99843 1.44440 1.02681 1.85255 1.02722 1.21433 0.95791 0.99030 0.87016 1.18611 1.08690 1.20601 0.90385 0.94266 1.26082 0.97089 0.99410 0.99368 1.69963 1.11454 1.40236 1.37933 0.85686 0.77779 0.78930 0.79136 1.19678 1.23649 1.19716 0.91765 0.91626 0.89455 0.89688 0.89939 0.90329 0.90872 0.85760 0.86267 0.86674 0.90863 0.91186 0.87875 0.90566 0.92478 0.92240 0.92365 0.93760 0.93584 0.94940 0.96033 0.92876 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 9.92 71.98 0.71 -0.75 16 2 C -0.09 -1.31 6.66 71.98 0.48 -0.83 16 3 S -0.28 -5.03 21.74 -56.49 -1.23 -6.26 16 4 C -0.06 -1.35 5.25 71.98 0.38 -0.97 16 5 C -0.11 -2.05 4.10 29.85 0.12 -1.93 16 6 C 0.51 14.60 7.54 87.66 0.66 15.26 16 7 O -0.57 -22.31 11.50 -3.03 -0.03 -22.34 16 8 N -0.60 -16.60 2.97 -794.25 -2.36 -18.95 16 9 C 0.10 1.69 6.32 86.36 0.55 2.24 16 10 C -0.13 -1.92 6.08 30.67 0.19 -1.74 16 11 C -0.12 -2.58 5.88 30.62 0.18 -2.40 16 12 C -0.11 -3.50 4.58 30.82 0.14 -3.36 16 13 C 0.14 4.88 3.21 45.12 0.15 5.03 16 14 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 15 C 0.17 7.81 3.66 86.38 0.32 8.13 16 16 N -0.62 -31.73 2.08 -726.94 -1.51 -33.24 16 17 C 0.11 4.99 8.76 127.77 1.12 6.10 16 18 C -0.25 -15.21 9.94 84.03 0.84 -14.37 16 19 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 20 C -0.02 -1.44 5.36 84.86 0.45 -0.99 16 21 N -0.95 -61.60 13.97 21.65 0.30 -61.30 16 22 Si 0.95 49.65 24.86 68.60 1.71 51.35 16 23 H -0.27 -13.09 6.72 99.48 0.67 -12.42 16 24 H -0.31 -16.02 7.11 99.48 0.71 -15.31 16 25 H -0.27 -14.08 7.11 99.48 0.71 -13.37 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 1.80 8.03 -2.39 -0.02 1.78 16 33 H 0.12 1.78 8.04 -2.38 -0.02 1.76 16 34 H 0.12 1.78 7.53 -2.39 -0.02 1.76 16 35 H 0.12 1.23 5.92 -2.39 -0.01 1.22 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.10 1.02 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.06 2.11 6.19 -2.39 -0.01 2.10 16 43 H 0.04 2.30 6.32 -2.39 -0.02 2.28 16 44 H 0.05 2.05 6.78 -2.39 -0.02 2.03 16 45 H 0.03 1.34 6.74 -2.39 -0.02 1.33 16 46 H 0.02 1.04 3.02 -2.39 -0.01 1.03 16 47 H 0.05 2.10 7.83 -2.39 -0.02 2.08 16 48 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -75.37 373.92 4.04 -71.34 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.88 Total: 9.99 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 6.28 Total: 9.41 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -3.56 Total: -113.49 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.03 Total: -22.34 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 1.71 Total: 51.35 kcal Atomic # 16 Polarization: -5.03 SS G_CDS: -1.23 Total: -6.26 kcal Total: -75.37 4.04 -71.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157608868.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.744 kcal (2) G-P(sol) polarization free energy of solvation -75.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds