Wall clock time and date at job start Tue Mar 31 2020 11:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81406 * 102.99836 * 2 1 4 4 C 1.52997 * 109.46786 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47559 * 304.99924 * 4 3 2 6 6 C 1.52999 * 109.47149 * 65.00896 * 4 3 2 7 7 C 1.50709 * 109.47043 * 185.00160 * 4 3 2 8 8 O 1.21285 * 119.99621 * 351.36094 * 7 4 3 9 9 N 1.34772 * 119.99884 * 171.35500 * 7 4 3 10 10 C 1.46923 * 120.63242 * 6.14913 * 9 7 4 11 11 C 1.53194 * 108.77127 * 233.58386 * 10 9 7 12 12 C 1.53041 * 109.34128 * 305.37879 * 11 10 9 13 13 C 1.53044 * 109.53756 * 61.31987 * 12 11 10 14 14 C 1.46930 * 120.62673 * 186.12075 * 9 7 4 15 15 H 1.08998 * 109.58780 * 246.20120 * 14 9 7 16 16 C 1.53003 * 109.58806 * 6.63118 * 14 9 7 17 17 N 1.46496 * 109.47153 * 177.26860 * 16 14 9 18 18 C 1.46503 * 119.99806 * 86.56382 * 17 16 14 19 19 C 1.36934 * 120.00325 * 266.56554 * 17 16 14 20 20 H 1.08002 * 120.00190 * 330.66275 * 19 17 16 21 21 C 1.38815 * 120.00238 * 150.67115 * 19 17 16 22 22 N 1.31615 * 119.99946 * 166.72812 * 21 19 17 23 23 Si 1.86797 * 119.99707 * 346.72812 * 21 19 17 24 24 H 1.48501 * 109.47617 * 94.78719 * 23 21 19 25 25 H 1.48509 * 109.46957 * 214.78799 * 23 21 19 26 26 H 1.48506 * 109.47142 * 334.78383 * 23 21 19 27 27 H 1.09001 * 109.47288 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46895 * 299.99578 * 1 2 3 29 29 H 1.09001 * 109.47466 * 59.99639 * 1 2 3 30 30 H 1.09003 * 109.46604 * 60.00425 * 3 2 1 31 31 H 1.08998 * 109.47155 * 300.00667 * 3 2 1 32 32 H 1.09004 * 109.47028 * 177.23011 * 6 4 3 33 33 H 1.09006 * 109.46571 * 297.22550 * 6 4 3 34 34 H 1.08999 * 109.47460 * 57.22446 * 6 4 3 35 35 H 1.08999 * 109.58815 * 353.37281 * 10 9 7 36 36 H 1.08998 * 109.58657 * 113.65749 * 10 9 7 37 37 H 1.08996 * 109.49878 * 65.31910 * 11 10 9 38 38 H 1.09005 * 109.49339 * 185.38188 * 11 10 9 39 39 H 1.09003 * 109.42960 * 301.31367 * 12 11 10 40 40 H 1.08997 * 109.48234 * 181.35758 * 12 11 10 41 41 H 1.08997 * 109.49629 * 178.71267 * 13 12 11 42 42 H 1.09003 * 109.49583 * 58.64823 * 13 12 11 43 43 H 1.08998 * 109.46915 * 297.27430 * 16 14 9 44 44 H 1.09002 * 109.46801 * 57.26932 * 16 14 9 45 45 H 1.09005 * 109.47233 * 61.11013 * 18 17 16 46 46 H 1.08997 * 109.47619 * 181.11208 * 18 17 16 47 47 H 1.08998 * 109.47032 * 301.11672 * 18 17 16 48 48 H 0.97008 * 119.99861 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7422 1.9400 0.0006 5 1 4.1693 1.3954 0.8426 6 6 4.3182 1.3918 -1.3065 7 6 4.0818 3.4031 0.1245 8 8 3.2052 4.2377 0.0469 9 7 5.3595 3.7839 0.3217 10 6 6.4486 2.7986 0.2841 11 6 7.2615 2.9127 1.5775 12 6 7.7284 4.3591 1.7568 13 6 6.5110 5.2798 1.8679 14 6 5.6897 5.1925 0.5777 15 1 6.2725 5.5882 -0.2540 16 6 4.4003 6.0012 0.7349 17 7 4.7320 7.3919 1.0545 18 6 4.9958 8.3483 -0.0235 19 6 4.7956 7.7978 2.3607 20 1 4.1844 7.3127 3.1073 21 6 5.6455 8.8331 2.7253 22 7 5.5242 9.3987 3.9075 23 14 6.9612 9.4233 1.5379 24 1 6.4477 10.5840 0.7670 25 1 8.1690 9.8306 2.3001 26 1 7.3131 8.3245 0.6029 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8030 2.2371 0.8901 31 1 1.8029 2.2372 -0.8899 32 1 5.3951 1.5590 -1.3274 33 1 4.1152 0.3228 -1.3728 34 1 3.8547 1.9027 -2.1504 35 1 6.0310 1.7951 0.2023 36 1 7.0920 2.9975 -0.5730 37 1 6.6395 2.6240 2.4248 38 1 8.1285 2.2543 1.5216 39 1 8.3304 4.6549 0.8976 40 1 8.3274 4.4379 2.6641 41 1 6.8441 6.3067 2.0184 42 1 5.8959 4.9693 2.7125 43 1 3.8344 5.9673 -0.1961 44 1 3.8009 5.5764 1.5401 45 1 4.1094 8.4423 -0.6508 46 1 5.2425 9.3197 0.4049 47 1 5.8318 7.9944 -0.6267 48 1 6.1184 10.1219 4.1624 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157710334.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:57 Heat of formation + Delta-G solvation = 3.480934 kcal Electronic energy + Delta-G solvation = -26082.954105 eV Core-core repulsion = 22686.659422 eV Total energy + Delta-G solvation = -3396.294684 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.52845 -37.40675 -35.93915 -34.69840 -32.53269 -31.79615 -30.65384 -29.28482 -27.37914 -27.03563 -25.91556 -24.80471 -23.33832 -22.30506 -20.42366 -20.21493 -18.74219 -17.03797 -16.76864 -16.05062 -15.80370 -15.60494 -15.25728 -14.63322 -14.45455 -14.25094 -14.01839 -13.90626 -13.59016 -13.42579 -13.28358 -13.04938 -12.81992 -12.70652 -12.33707 -12.30710 -12.17214 -12.10568 -11.76229 -11.48966 -11.38436 -11.30060 -11.09316 -10.63773 -10.44217 -10.29396 -10.21124 -10.15987 -9.97063 -9.83705 -9.37067 -9.06913 -8.45785 -8.24783 -7.88027 -6.84762 -5.88158 -3.28040 1.42847 2.35781 2.79535 3.19624 3.32276 3.45640 3.49885 4.42703 4.53486 4.56672 4.69045 4.83380 4.90332 4.90923 4.99726 5.08867 5.15957 5.27596 5.37030 5.40568 5.43978 5.45978 5.46318 5.56809 5.58457 5.63767 5.78491 5.85624 5.95166 5.98294 6.02337 6.16099 6.20706 6.29050 6.42269 6.49074 6.60782 6.67423 6.75250 6.89782 7.11443 7.25535 7.65727 8.07176 8.34624 8.46839 9.03708 9.78682 10.16020 11.28241 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.019133 B = 0.003871 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.060352 B = 7231.251433 C = 7938.079508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.268 6.268 3 C -0.061 4.061 4 C -0.096 4.096 5 H 0.101 0.899 6 C -0.152 4.152 7 C 0.520 3.480 8 O -0.527 6.527 9 N -0.601 5.601 10 C 0.100 3.900 11 C -0.134 4.134 12 C -0.123 4.123 13 C -0.117 4.117 14 C 0.123 3.877 15 H 0.058 0.942 16 C 0.165 3.835 17 N -0.614 5.614 18 C 0.103 3.897 19 C -0.251 4.251 20 H 0.084 0.916 21 C 0.018 3.982 22 N -0.916 5.916 23 Si 0.893 3.107 24 H -0.293 1.293 25 H -0.308 1.308 26 H -0.267 1.267 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.020 0.980 46 H 0.057 0.943 47 H 0.017 0.983 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.993 -20.092 -9.824 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.042 6.042 3 C -0.210 4.210 4 C -0.118 4.118 5 H 0.119 0.881 6 C -0.209 4.209 7 C 0.306 3.694 8 O -0.403 6.403 9 N -0.335 5.335 10 C -0.023 4.023 11 C -0.172 4.172 12 C -0.161 4.161 13 C -0.155 4.155 14 C 0.018 3.982 15 H 0.077 0.923 16 C 0.039 3.961 17 N -0.338 5.338 18 C -0.042 4.042 19 C -0.380 4.380 20 H 0.101 0.899 21 C -0.180 4.180 22 N -0.560 5.560 23 Si 0.725 3.275 24 H -0.221 1.221 25 H -0.237 1.237 26 H -0.193 1.193 27 H 0.118 0.882 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.038 0.962 46 H 0.075 0.925 47 H 0.035 0.965 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.771 -20.387 -9.756 22.615 hybrid contribution 0.188 1.475 -0.465 1.558 sum -0.583 -18.912 -10.222 21.506 Atomic orbital electron populations 1.23370 0.94048 1.06303 1.05182 1.86630 1.07623 1.11836 1.98120 1.23216 0.97971 0.93203 1.06604 1.21061 0.94643 0.94748 1.01374 0.88092 1.22029 1.01370 1.02119 0.95425 1.20331 0.82529 0.90049 0.76540 1.90766 1.47510 1.52174 1.49897 1.48339 1.05665 1.09342 1.70158 1.21938 0.89471 0.92663 0.98228 1.21924 0.99578 0.97997 0.97710 1.21599 0.98617 0.94386 1.01505 1.21863 0.95299 1.01294 0.97063 1.22386 1.00702 0.78246 0.96820 0.92347 1.21504 0.91325 0.82412 1.00907 1.44432 1.82391 1.04210 1.02801 1.21427 0.97348 0.93898 0.91490 1.18952 1.18532 1.16594 0.83918 0.89868 1.25339 0.98172 0.98702 0.95757 1.69771 1.39818 1.25702 1.20705 0.86873 0.81834 0.78494 0.80268 1.22128 1.23748 1.19252 0.88199 0.90369 0.90428 0.89166 0.89151 0.91235 0.90646 0.91815 0.89494 0.91566 0.91500 0.91332 0.92539 0.91976 0.88786 0.91772 0.91250 0.92180 0.96216 0.92492 0.96510 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.76 101.05 1.09 0.18 16 2 S -0.27 -2.65 21.24 -107.50 -2.28 -4.93 16 3 C -0.06 -0.68 4.68 37.16 0.17 -0.51 16 4 C -0.10 -1.06 1.88 -91.77 -0.17 -1.23 16 5 H 0.10 1.03 7.53 -51.93 -0.39 0.64 16 6 C -0.15 -1.37 8.52 37.16 0.32 -1.06 16 7 C 0.52 7.73 6.84 -10.98 -0.08 7.66 16 8 O -0.53 -9.71 11.59 5.55 0.06 -9.65 16 9 N -0.60 -8.82 2.97 -165.22 -0.49 -9.31 16 10 C 0.10 1.09 5.15 -3.71 -0.02 1.07 16 11 C -0.13 -1.51 6.08 -26.61 -0.16 -1.67 16 12 C -0.12 -1.77 5.89 -26.69 -0.16 -1.92 16 13 C -0.12 -2.18 4.54 -26.61 -0.12 -2.30 16 14 C 0.12 2.25 3.22 -67.59 -0.22 2.03 16 15 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 16 C 0.16 3.56 3.69 -4.04 -0.01 3.54 16 17 N -0.61 -15.09 2.38 -181.12 -0.43 -15.53 16 18 C 0.10 2.37 8.44 59.85 0.51 2.87 16 19 C -0.25 -7.06 8.33 -15.06 -0.13 -7.18 16 20 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 21 C 0.02 0.53 5.36 -17.43 -0.09 0.44 16 22 N -0.92 -28.32 13.97 55.49 0.78 -27.55 16 23 Si 0.89 22.59 23.64 -169.99 -4.02 18.57 16 24 H -0.29 -7.33 6.76 56.52 0.38 -6.94 16 25 H -0.31 -7.96 7.11 56.52 0.40 -7.56 16 26 H -0.27 -6.41 6.02 56.52 0.34 -6.07 16 27 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 29 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.09 1.11 8.08 -51.92 -0.42 0.69 16 31 H 0.09 1.05 8.13 -51.93 -0.42 0.62 16 32 H 0.07 0.56 5.39 -51.93 -0.28 0.28 16 33 H 0.07 0.63 7.23 -51.93 -0.38 0.25 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.75 4.48 -51.93 -0.23 0.52 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 2.10 6.18 -51.93 -0.32 1.78 16 42 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.07 1.52 6.25 -51.93 -0.32 1.20 16 44 H 0.06 1.41 7.06 -51.93 -0.37 1.04 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 1.40 3.52 -51.93 -0.18 1.21 16 47 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 48 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 364.12 15.07 5.49 5.49 Total: -1.00 -31.71 364.12 -8.37 -40.08 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -8.40 Total: 0.93 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 0.92 Total: 1.91 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.15 Total: -52.38 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.06 Total: -9.65 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.02 Total: 18.57 kcal Atomic # 16 Polarization: -2.65 SS G_CDS: -2.28 Total: -4.93 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.71 -8.37 -40.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157710334.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.557 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds