Wall clock time and date at job start Tue Mar 31 2020 11:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81400 * 102.99674 * 2 1 4 4 C 1.52998 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.47045 * 55.24139 * 4 3 2 6 6 C 1.52999 * 109.47446 * 295.24532 * 4 3 2 7 7 C 1.50694 * 109.47384 * 175.23826 * 4 3 2 8 8 O 1.21282 * 119.99769 * 18.10895 * 7 4 3 9 9 N 1.34777 * 120.00325 * 198.10348 * 7 4 3 10 10 C 1.46927 * 120.62999 * 353.89326 * 9 7 4 11 11 C 1.53194 * 108.77603 * 233.63323 * 10 9 7 12 12 C 1.53041 * 109.33646 * 305.34519 * 11 10 9 13 13 C 1.53111 * 109.50049 * 61.35138 * 12 11 10 14 14 C 1.46923 * 120.63427 * 173.91888 * 9 7 4 15 15 H 1.08997 * 109.58618 * 246.30202 * 14 9 7 16 16 C 1.52998 * 109.58521 * 6.58005 * 14 9 7 17 17 N 1.46507 * 109.47181 * 180.32242 * 16 14 9 18 18 C 1.46499 * 119.99944 * 83.27910 * 17 16 14 19 19 C 1.36933 * 119.99874 * 263.27431 * 17 16 14 20 20 H 1.07999 * 120.00155 * 140.97657 * 19 17 16 21 21 C 1.38813 * 120.00314 * 320.98029 * 19 17 16 22 22 N 1.31615 * 120.00429 * 167.12330 * 21 19 17 23 23 Si 1.86807 * 119.99796 * 347.12573 * 21 19 17 24 24 H 1.48498 * 109.47192 * 91.44214 * 23 21 19 25 25 H 1.48498 * 109.46820 * 211.44319 * 23 21 19 26 26 H 1.48500 * 109.46886 * 331.44376 * 23 21 19 27 27 H 1.08999 * 109.46800 * 299.99696 * 1 2 3 28 28 H 1.08995 * 109.47521 * 60.00067 * 1 2 3 29 29 H 1.09010 * 109.47034 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47273 * 60.00402 * 3 2 1 31 31 H 1.09002 * 109.47401 * 300.00144 * 3 2 1 32 32 H 1.09002 * 109.47122 * 296.22806 * 6 4 3 33 33 H 1.09000 * 109.47107 * 56.22545 * 6 4 3 34 34 H 1.09000 * 109.47223 * 176.22455 * 6 4 3 35 35 H 1.08995 * 109.59108 * 113.84210 * 10 9 7 36 36 H 1.09006 * 109.58283 * 353.41533 * 10 9 7 37 37 H 1.09001 * 109.49943 * 65.31478 * 11 10 9 38 38 H 1.09000 * 109.49964 * 185.38133 * 11 10 9 39 39 H 1.09002 * 109.45818 * 181.40254 * 12 11 10 40 40 H 1.08996 * 109.46207 * 301.36327 * 12 11 10 41 41 H 1.09004 * 109.48534 * 178.69588 * 13 12 11 42 42 H 1.08995 * 109.51454 * 58.63071 * 13 12 11 43 43 H 1.08999 * 109.46986 * 300.31963 * 16 14 9 44 44 H 1.08994 * 109.47427 * 60.31952 * 16 14 9 45 45 H 1.08991 * 109.47295 * 95.02771 * 18 17 16 46 46 H 1.09006 * 109.47012 * 215.02810 * 18 17 16 47 47 H 1.09007 * 109.46909 * 335.02624 * 18 17 16 48 48 H 0.97001 * 120.00477 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9400 0.0006 5 1 4.1697 1.3987 -0.8435 6 6 4.3179 1.3864 1.3056 7 6 4.0818 3.4035 -0.1173 8 8 3.2427 4.2427 0.1325 9 7 5.3180 3.7798 -0.5003 10 6 6.3828 2.7829 -0.6771 11 6 7.5951 3.2026 0.1602 12 6 8.0018 4.6291 -0.2165 13 6 6.8475 5.5873 0.0896 14 6 5.6267 5.1946 -0.7484 15 1 5.8446 5.3410 -1.8063 16 6 4.4297 6.0588 -0.3470 17 7 4.7373 7.4682 -0.6026 18 6 4.5563 8.0256 -1.9452 19 6 5.1938 8.2645 0.4136 20 1 5.9645 8.9963 0.2216 21 6 4.6660 8.1312 1.6906 22 7 5.2653 8.7030 2.7134 23 14 3.1052 7.1401 1.9573 24 1 3.4597 5.7299 2.2588 25 1 2.3434 7.7133 3.0958 26 1 2.2717 7.1892 0.7292 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 1.8031 2.2371 0.8901 31 1 1.8031 2.2372 -0.8900 32 1 3.9421 1.9711 2.1454 33 1 4.0157 0.3458 1.4234 34 1 5.4058 1.4480 1.2779 35 1 6.6649 2.7320 -1.7286 36 1 6.0288 1.8072 -0.3439 37 1 7.3369 3.1653 1.2185 38 1 8.4252 2.5239 -0.0359 39 1 8.8795 4.9207 0.3602 40 1 8.2360 4.6711 -1.2802 41 1 7.1456 6.6063 -0.1571 42 1 6.5962 5.5281 1.1485 43 1 3.5576 5.7654 -0.9314 44 1 4.2200 5.9191 0.7135 45 1 3.5760 8.4970 -2.0138 46 1 5.3308 8.7681 -2.1378 47 1 4.6276 7.2264 -2.6830 48 1 4.8963 8.6102 3.6056 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157710335.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:01 Heat of formation + Delta-G solvation = -0.128544 kcal Electronic energy + Delta-G solvation = -26521.170216 eV Core-core repulsion = 23124.719014 eV Total energy + Delta-G solvation = -3396.451202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.48803 -37.35304 -35.86280 -34.54863 -32.48863 -31.63734 -30.71873 -29.27803 -27.33135 -26.92433 -25.98874 -24.54951 -23.36176 -21.89032 -20.69346 -20.33016 -18.53651 -17.44805 -16.47011 -15.99401 -15.95490 -15.12594 -15.09625 -14.69244 -14.35761 -14.17661 -13.98882 -13.84275 -13.71908 -13.42017 -13.12313 -12.85030 -12.76383 -12.61862 -12.41120 -12.20718 -12.13338 -11.98291 -11.58205 -11.39857 -11.33033 -11.10622 -11.04562 -10.71087 -10.60717 -10.41755 -10.22862 -10.16164 -9.98593 -9.64787 -9.34079 -8.91491 -8.35689 -8.16969 -7.86253 -6.63854 -5.86376 -3.35595 1.43880 2.36626 2.84604 3.24737 3.56454 3.63188 3.78484 4.47499 4.61610 4.67173 4.74116 4.86102 4.90971 4.91808 5.04075 5.14781 5.19939 5.32988 5.41605 5.42700 5.46674 5.48959 5.54094 5.59488 5.62683 5.70318 5.82872 5.86899 5.96511 6.03144 6.12179 6.20624 6.23800 6.33549 6.49989 6.52395 6.68774 6.78930 6.79843 6.93845 7.16566 7.26389 7.69911 8.17913 8.45817 8.46833 9.11035 9.82615 10.23938 11.27606 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.005193 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.903222 B = 5390.392768 C = 6401.344398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.265 6.265 3 C -0.064 4.064 4 C -0.094 4.094 5 H 0.099 0.901 6 C -0.149 4.149 7 C 0.515 3.485 8 O -0.522 6.522 9 N -0.604 5.604 10 C 0.102 3.898 11 C -0.134 4.134 12 C -0.121 4.121 13 C -0.114 4.114 14 C 0.127 3.873 15 H 0.060 0.940 16 C 0.144 3.856 17 N -0.618 5.618 18 C 0.126 3.874 19 C -0.265 4.265 20 H 0.077 0.923 21 C 0.034 3.966 22 N -0.911 5.911 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.314 1.314 26 H -0.272 1.272 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.008 0.992 46 H 0.037 0.963 47 H 0.027 0.973 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.783 -19.155 -7.407 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.040 6.040 3 C -0.213 4.213 4 C -0.117 4.117 5 H 0.117 0.883 6 C -0.206 4.206 7 C 0.301 3.699 8 O -0.398 6.398 9 N -0.338 5.338 10 C -0.021 4.021 11 C -0.172 4.172 12 C -0.158 4.158 13 C -0.152 4.152 14 C 0.022 3.978 15 H 0.078 0.922 16 C 0.019 3.981 17 N -0.343 5.343 18 C -0.019 4.019 19 C -0.394 4.394 20 H 0.095 0.905 21 C -0.166 4.166 22 N -0.553 5.553 23 Si 0.732 3.268 24 H -0.206 1.206 25 H -0.244 1.244 26 H -0.197 1.197 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.095 0.905 45 H 0.026 0.974 46 H 0.055 0.945 47 H 0.046 0.954 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.596 -19.512 -7.125 20.781 hybrid contribution -1.548 0.450 0.234 1.629 sum -2.144 -19.062 -6.891 20.382 Atomic orbital electron populations 1.23375 0.94112 1.06296 1.05172 1.86596 1.07543 1.11717 1.98096 1.23237 0.98132 0.93320 1.06566 1.21064 0.94523 0.94620 1.01460 0.88340 1.21926 1.01165 1.02044 0.95503 1.20372 0.82317 0.90153 0.77102 1.90815 1.48815 1.51871 1.48316 1.48321 1.09446 1.08576 1.67411 1.21835 0.88320 0.91909 1.00013 1.21917 0.97012 0.97861 1.00454 1.21594 0.99015 0.94444 1.00792 1.21802 0.92969 0.99908 1.00520 1.22330 0.99211 0.77924 0.98302 0.92163 1.21986 0.92279 0.82337 1.01528 1.44374 1.78027 1.04971 1.06932 1.21029 0.98054 0.96311 0.86532 1.18763 1.16121 1.16906 0.87598 0.90513 1.25481 0.97410 0.97596 0.96135 1.69796 1.39870 1.46728 0.98955 0.86662 0.84796 0.78773 0.76546 1.20580 1.24380 1.19679 0.90374 0.90465 0.88161 0.88907 0.89481 0.91668 0.90449 0.91471 0.91633 0.89805 0.91538 0.91290 0.92017 0.92485 0.88979 0.91747 0.92525 0.90474 0.97409 0.94475 0.95438 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 10.76 101.05 1.09 0.09 16 2 S -0.27 -2.83 21.11 -107.50 -2.27 -5.10 16 3 C -0.06 -0.80 4.75 37.16 0.18 -0.62 16 4 C -0.09 -1.18 1.86 -91.78 -0.17 -1.35 16 5 H 0.10 1.05 7.23 -51.92 -0.38 0.68 16 6 C -0.15 -1.70 8.75 37.16 0.33 -1.38 16 7 C 0.52 8.69 6.80 -10.99 -0.07 8.62 16 8 O -0.52 -11.10 10.74 5.56 0.06 -11.05 16 9 N -0.60 -9.67 2.97 -165.23 -0.49 -10.16 16 10 C 0.10 1.19 5.79 -3.71 -0.02 1.17 16 11 C -0.13 -1.59 6.08 -26.61 -0.16 -1.75 16 12 C -0.12 -1.71 5.89 -26.65 -0.16 -1.87 16 13 C -0.11 -2.17 4.72 -26.58 -0.13 -2.30 16 14 C 0.13 2.41 3.19 -67.61 -0.22 2.19 16 15 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 16 C 0.14 3.36 1.98 -4.04 -0.01 3.35 16 17 N -0.62 -15.36 2.21 -181.12 -0.40 -15.76 16 18 C 0.13 2.66 10.71 59.85 0.64 3.30 16 19 C -0.27 -7.56 8.60 -15.06 -0.13 -7.69 16 20 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 21 C 0.03 1.01 5.41 -17.43 -0.09 0.91 16 22 N -0.91 -28.52 13.97 55.49 0.78 -27.75 16 23 Si 0.90 25.03 24.17 -169.99 -4.11 20.92 16 24 H -0.28 -7.71 6.33 56.52 0.36 -7.36 16 25 H -0.31 -8.84 7.11 56.52 0.40 -8.44 16 26 H -0.27 -7.71 7.02 56.52 0.40 -7.31 16 27 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.09 1.29 8.06 -51.92 -0.42 0.87 16 31 H 0.09 1.12 8.14 -51.92 -0.42 0.69 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.79 7.00 -51.93 -0.36 0.42 16 34 H 0.07 0.69 6.19 -51.93 -0.32 0.37 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.80 4.34 -51.93 -0.23 0.58 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.99 7.05 -51.93 -0.37 1.62 16 42 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.06 1.37 6.42 -51.93 -0.33 1.03 16 44 H 0.08 2.03 2.07 -51.93 -0.11 1.92 16 45 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 46 H 0.04 0.75 8.08 -51.93 -0.42 0.33 16 47 H 0.03 0.50 8.03 -51.93 -0.42 0.08 16 48 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 367.61 15.07 5.54 5.54 Total: -1.00 -33.37 367.61 -8.27 -41.64 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -8.45 Total: -0.96 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 1.07 Total: 2.68 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.12 Total: -53.67 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.06 Total: -11.05 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -4.11 Total: 20.92 kcal Atomic # 16 Polarization: -2.83 SS G_CDS: -2.27 Total: -5.10 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.37 -8.27 -41.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157710335.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.516 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds