Wall clock time and date at job start Tue Mar 31 2020 11:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81400 * 102.99674 * 2 1 4 4 C 1.52998 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.47045 * 55.24139 * 4 3 2 6 6 C 1.52999 * 109.47446 * 295.24532 * 4 3 2 7 7 C 1.50694 * 109.47384 * 175.23826 * 4 3 2 8 8 O 1.21282 * 119.99769 * 18.10895 * 7 4 3 9 9 N 1.34777 * 120.00325 * 198.10348 * 7 4 3 10 10 C 1.46927 * 120.62999 * 353.89326 * 9 7 4 11 11 C 1.53194 * 108.77603 * 233.63323 * 10 9 7 12 12 C 1.53041 * 109.33646 * 305.34519 * 11 10 9 13 13 C 1.53111 * 109.50049 * 61.35138 * 12 11 10 14 14 C 1.46923 * 120.63427 * 173.91888 * 9 7 4 15 15 H 1.08997 * 109.58618 * 246.30202 * 14 9 7 16 16 C 1.52998 * 109.58521 * 6.58005 * 14 9 7 17 17 N 1.46507 * 109.47181 * 180.32242 * 16 14 9 18 18 C 1.46499 * 119.99944 * 83.27910 * 17 16 14 19 19 C 1.36933 * 119.99874 * 263.27431 * 17 16 14 20 20 H 1.07999 * 120.00155 * 140.97657 * 19 17 16 21 21 C 1.38813 * 120.00314 * 320.98029 * 19 17 16 22 22 N 1.31615 * 120.00429 * 167.12330 * 21 19 17 23 23 Si 1.86807 * 119.99796 * 347.12573 * 21 19 17 24 24 H 1.48498 * 109.47192 * 91.44214 * 23 21 19 25 25 H 1.48498 * 109.46820 * 211.44319 * 23 21 19 26 26 H 1.48500 * 109.46886 * 331.44376 * 23 21 19 27 27 H 1.08999 * 109.46800 * 299.99696 * 1 2 3 28 28 H 1.08995 * 109.47521 * 60.00067 * 1 2 3 29 29 H 1.09010 * 109.47034 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47273 * 60.00402 * 3 2 1 31 31 H 1.09002 * 109.47401 * 300.00144 * 3 2 1 32 32 H 1.09002 * 109.47122 * 296.22806 * 6 4 3 33 33 H 1.09000 * 109.47107 * 56.22545 * 6 4 3 34 34 H 1.09000 * 109.47223 * 176.22455 * 6 4 3 35 35 H 1.08995 * 109.59108 * 113.84210 * 10 9 7 36 36 H 1.09006 * 109.58283 * 353.41533 * 10 9 7 37 37 H 1.09001 * 109.49943 * 65.31478 * 11 10 9 38 38 H 1.09000 * 109.49964 * 185.38133 * 11 10 9 39 39 H 1.09002 * 109.45818 * 181.40254 * 12 11 10 40 40 H 1.08996 * 109.46207 * 301.36327 * 12 11 10 41 41 H 1.09004 * 109.48534 * 178.69588 * 13 12 11 42 42 H 1.08995 * 109.51454 * 58.63071 * 13 12 11 43 43 H 1.08999 * 109.46986 * 300.31963 * 16 14 9 44 44 H 1.08994 * 109.47427 * 60.31952 * 16 14 9 45 45 H 1.08991 * 109.47295 * 95.02771 * 18 17 16 46 46 H 1.09006 * 109.47012 * 215.02810 * 18 17 16 47 47 H 1.09007 * 109.46909 * 335.02624 * 18 17 16 48 48 H 0.97001 * 120.00477 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9400 0.0006 5 1 4.1697 1.3987 -0.8435 6 6 4.3179 1.3864 1.3056 7 6 4.0818 3.4035 -0.1173 8 8 3.2427 4.2427 0.1325 9 7 5.3180 3.7798 -0.5003 10 6 6.3828 2.7829 -0.6771 11 6 7.5951 3.2026 0.1602 12 6 8.0018 4.6291 -0.2165 13 6 6.8475 5.5873 0.0896 14 6 5.6267 5.1946 -0.7484 15 1 5.8446 5.3410 -1.8063 16 6 4.4297 6.0588 -0.3470 17 7 4.7373 7.4682 -0.6026 18 6 4.5563 8.0256 -1.9452 19 6 5.1938 8.2645 0.4136 20 1 5.9645 8.9963 0.2216 21 6 4.6660 8.1312 1.6906 22 7 5.2653 8.7030 2.7134 23 14 3.1052 7.1401 1.9573 24 1 3.4597 5.7299 2.2588 25 1 2.3434 7.7133 3.0958 26 1 2.2717 7.1892 0.7292 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 1.8031 2.2371 0.8901 31 1 1.8031 2.2372 -0.8900 32 1 3.9421 1.9711 2.1454 33 1 4.0157 0.3458 1.4234 34 1 5.4058 1.4480 1.2779 35 1 6.6649 2.7320 -1.7286 36 1 6.0288 1.8072 -0.3439 37 1 7.3369 3.1653 1.2185 38 1 8.4252 2.5239 -0.0359 39 1 8.8795 4.9207 0.3602 40 1 8.2360 4.6711 -1.2802 41 1 7.1456 6.6063 -0.1571 42 1 6.5962 5.5281 1.1485 43 1 3.5576 5.7654 -0.9314 44 1 4.2200 5.9191 0.7135 45 1 3.5760 8.4970 -2.0138 46 1 5.3308 8.7681 -2.1378 47 1 4.6276 7.2264 -2.6830 48 1 4.8963 8.6102 3.6056 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157710335.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:00 Heat of formation + Delta-G solvation = -21.096526 kcal Electronic energy + Delta-G solvation = -26522.079456 eV Core-core repulsion = 23124.719014 eV Total energy + Delta-G solvation = -3397.360442 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.81228 -38.74690 -37.54554 -35.81512 -33.85248 -33.67829 -32.20599 -29.96010 -28.51264 -28.21525 -27.95364 -25.96766 -24.56945 -23.40661 -22.48971 -21.57269 -19.76591 -19.13847 -18.03083 -17.48448 -17.03557 -16.76552 -16.36467 -15.90220 -15.88179 -15.45671 -15.32354 -15.23139 -14.71047 -14.60304 -14.44481 -14.32792 -14.11436 -14.02578 -13.81715 -13.80567 -13.37689 -13.20360 -13.05718 -12.90581 -12.54190 -12.45409 -12.35604 -12.30899 -12.25368 -11.88723 -11.84040 -11.55856 -11.47968 -11.28870 -11.04508 -10.77154 -10.25085 -9.51803 -8.70880 -8.68162 -8.21786 -5.64723 0.59105 1.28192 1.32879 1.47841 1.54599 1.59792 2.01605 2.35895 3.08989 3.43242 3.44202 3.62810 3.75123 3.88791 3.93006 4.04111 4.13220 4.22194 4.27990 4.32700 4.34959 4.41579 4.44378 4.56887 4.61020 4.65234 4.69790 4.74519 4.83614 4.85200 4.86545 4.91905 5.00485 5.02960 5.07382 5.11076 5.18393 5.20551 5.32147 5.36955 5.55813 5.69448 5.92965 6.12746 6.45785 6.95147 7.19204 7.61977 8.04682 8.96122 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.005193 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.903222 B = 5390.392768 C = 6401.344398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.261 6.261 3 C -0.065 4.065 4 C -0.082 4.082 5 H 0.129 0.871 6 C -0.144 4.144 7 C 0.505 3.495 8 O -0.575 6.575 9 N -0.604 5.604 10 C 0.097 3.903 11 C -0.130 4.130 12 C -0.114 4.114 13 C -0.106 4.106 14 C 0.136 3.864 15 H 0.079 0.921 16 C 0.147 3.853 17 N -0.633 5.633 18 C 0.125 3.875 19 C -0.238 4.238 20 H 0.053 0.947 21 C -0.011 4.011 22 N -0.950 5.950 23 Si 0.957 3.043 24 H -0.286 1.286 25 H -0.321 1.321 26 H -0.282 1.282 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.049 0.951 38 H 0.110 0.890 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.020 0.980 43 H 0.050 0.950 44 H 0.047 0.953 45 H 0.006 0.994 46 H 0.044 0.956 47 H 0.059 0.941 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 -22.742 -9.616 24.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.035 6.035 3 C -0.213 4.213 4 C -0.104 4.104 5 H 0.147 0.853 6 C -0.201 4.201 7 C 0.293 3.707 8 O -0.455 6.455 9 N -0.337 5.337 10 C -0.024 4.024 11 C -0.168 4.168 12 C -0.151 4.151 13 C -0.144 4.144 14 C 0.031 3.969 15 H 0.097 0.903 16 C 0.023 3.977 17 N -0.359 5.359 18 C -0.020 4.020 19 C -0.368 4.368 20 H 0.070 0.930 21 C -0.207 4.207 22 N -0.596 5.596 23 Si 0.792 3.208 24 H -0.214 1.214 25 H -0.251 1.251 26 H -0.208 1.208 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.139 0.861 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.129 0.871 37 H 0.068 0.932 38 H 0.129 0.871 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.039 0.961 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.024 0.976 46 H 0.063 0.937 47 H 0.078 0.922 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.195 -23.148 -9.372 24.974 hybrid contribution -1.790 1.540 0.832 2.504 sum -1.595 -21.609 -8.539 23.290 Atomic orbital electron populations 1.23493 0.92152 1.07706 1.05500 1.86483 1.09761 1.09218 1.98065 1.23122 0.98173 0.94964 1.05084 1.21049 0.94753 0.91473 1.03119 0.85309 1.21916 1.01976 1.02399 0.93820 1.21202 0.81895 0.91760 0.75873 1.90783 1.50382 1.53706 1.50580 1.48400 1.10534 1.08002 1.66796 1.22223 0.86723 0.91593 1.01860 1.21929 0.98532 0.96824 0.99532 1.21547 0.96665 0.94699 1.02237 1.21628 0.95306 0.99810 0.97704 1.21876 0.96663 0.79482 0.98920 0.90297 1.21801 0.94057 0.82194 0.99623 1.44574 1.78028 1.05772 1.07534 1.21143 0.98114 0.97569 0.85142 1.18674 1.14179 1.15644 0.88317 0.92956 1.25875 0.99351 0.99105 0.96388 1.69873 1.41278 1.49163 0.99257 0.85750 0.82366 0.77339 0.75377 1.21382 1.25092 1.20777 0.90380 0.89910 0.86139 0.91239 0.90260 0.94255 0.88672 0.89917 0.88785 0.87084 0.93181 0.87131 0.91788 0.90264 0.92321 0.96140 0.93218 0.93493 0.97593 0.93731 0.92186 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.73 10.76 113.37 1.22 -0.51 16 2 S -0.26 -4.96 21.11 -56.49 -1.19 -6.15 16 3 C -0.06 -1.55 4.75 71.98 0.34 -1.21 16 4 C -0.08 -1.88 1.86 -11.54 -0.02 -1.90 16 5 H 0.13 2.20 7.23 -2.38 -0.02 2.18 16 6 C -0.14 -2.97 8.75 71.98 0.63 -2.34 16 7 C 0.51 16.58 6.80 87.65 0.60 17.18 16 8 O -0.57 -24.93 10.74 -3.03 -0.03 -24.96 16 9 N -0.60 -18.16 2.97 -795.06 -2.36 -20.53 16 10 C 0.10 1.82 5.79 86.36 0.50 2.32 16 11 C -0.13 -2.58 6.08 30.67 0.19 -2.40 16 12 C -0.11 -2.96 5.89 30.65 0.18 -2.78 16 13 C -0.11 -4.07 4.72 30.69 0.14 -3.93 16 14 C 0.14 5.04 3.19 44.97 0.14 5.18 16 15 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 16 C 0.15 6.98 1.98 86.38 0.17 7.15 16 17 N -0.63 -31.85 2.21 -726.93 -1.60 -33.46 16 18 C 0.12 5.15 10.71 127.77 1.37 6.51 16 19 C -0.24 -14.01 8.60 84.03 0.72 -13.29 16 20 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16 21 C -0.01 -0.70 5.41 84.86 0.46 -0.24 16 22 N -0.95 -61.91 13.97 21.65 0.30 -61.60 16 23 Si 0.96 54.81 24.17 68.60 1.66 56.46 16 24 H -0.29 -16.48 6.33 99.48 0.63 -15.85 16 25 H -0.32 -18.37 7.11 99.48 0.71 -17.66 16 26 H -0.28 -16.35 7.02 99.48 0.70 -15.65 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.97 8.06 -2.39 -0.02 1.95 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.65 7.00 -2.39 -0.02 1.64 16 34 H 0.08 1.43 6.19 -2.39 -0.01 1.42 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.11 1.53 4.34 -2.38 -0.01 1.52 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.06 2.60 7.05 -2.38 -0.02 2.58 16 42 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.05 2.42 6.42 -2.39 -0.02 2.41 16 44 H 0.05 2.55 2.07 -2.39 0.00 2.54 16 45 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 46 H 0.04 1.75 8.08 -2.38 -0.02 1.74 16 47 H 0.06 2.07 8.03 -2.38 -0.02 2.05 16 48 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 Total: -1.00 -77.63 367.61 4.24 -73.39 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 0.83 Total: 7.07 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 6.64 Total: 9.77 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -3.66 Total: -115.59 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.03 Total: -24.96 kcal Atomic # 14 Polarization: 54.81 SS G_CDS: 1.66 Total: 56.46 kcal Atomic # 16 Polarization: -4.96 SS G_CDS: -1.19 Total: -6.15 kcal Total: -77.63 4.24 -73.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157710335.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.293 kcal (2) G-P(sol) polarization free energy of solvation -77.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds