Wall clock time and date at job start Tue Mar 31 2020 10:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46959 * 2 1 4 4 C 1.52996 * 109.47441 * 120.00175 * 2 1 3 5 5 C 1.52995 * 109.47461 * 184.99838 * 4 2 1 6 6 C 1.50698 * 109.47623 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99296 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00588 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99653 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00360 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46918 * 89.99978 * 10 8 6 12 12 H 1.48497 * 109.47045 * 209.99893 * 10 8 6 13 13 H 1.48497 * 109.46949 * 330.00132 * 10 8 6 14 14 N 1.46902 * 109.46980 * 240.00616 * 2 1 3 15 15 C 1.47544 * 111.00020 * 306.10112 * 14 2 1 16 16 C 1.54564 * 107.28810 * 123.22086 * 15 14 2 17 17 C 1.53760 * 102.88087 * 21.02750 * 16 15 14 18 18 C 1.48107 * 111.00258 * 67.04581 * 14 2 1 19 19 C 1.49847 * 112.05847 * 204.97900 * 17 16 15 20 20 C 1.37709 * 133.81036 * 57.72638 * 19 17 16 21 21 C 1.38341 * 120.08224 * 179.97438 * 20 19 17 22 22 C 1.38306 * 119.84980 * 0.02562 * 21 20 19 23 23 C 1.37931 * 120.30790 * 0.06616 * 22 21 20 24 24 C 1.39273 * 120.23965 * 359.96200 * 23 22 21 25 25 N 1.39708 * 130.79242 * 179.97438 * 24 23 22 26 26 C 1.34848 * 112.11931 * 179.97438 * 25 24 23 27 27 O 1.21286 * 126.76276 * 179.97438 * 26 25 24 28 28 H 1.09001 * 109.46929 * 186.27175 * 1 2 3 29 29 H 1.08996 * 109.47255 * 306.26953 * 1 2 3 30 30 H 1.09007 * 109.47141 * 66.27465 * 1 2 3 31 31 H 1.09007 * 109.46860 * 65.00083 * 4 2 1 32 32 H 1.08997 * 109.47054 * 305.00570 * 4 2 1 33 33 H 1.09007 * 109.47290 * 300.00837 * 5 4 2 34 34 H 1.09007 * 109.46884 * 60.00259 * 5 4 2 35 35 H 0.97006 * 120.00347 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.88118 * 242.63916 * 15 14 2 37 37 H 1.08996 * 109.88269 * 3.64103 * 15 14 2 38 38 H 1.08995 * 110.73407 * 139.37969 * 16 15 14 39 39 H 1.09004 * 110.72307 * 262.50818 * 16 15 14 40 40 H 1.09004 * 110.39104 * 333.80511 * 18 14 2 41 41 H 1.08994 * 110.39676 * 96.20097 * 18 14 2 42 42 H 1.07996 * 119.95945 * 359.96128 * 20 19 17 43 43 H 1.08002 * 120.07630 * 179.97438 * 21 20 19 44 44 H 1.08002 * 119.84431 * 180.02562 * 22 21 20 45 45 H 1.07995 * 119.87675 * 179.97438 * 23 22 21 46 46 H 0.96994 * 123.94184 * 0.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0673 -1.3243 2.5436 7 1 3.3689 -1.8054 3.2123 8 6 5.4185 -1.3606 2.8154 9 7 6.2690 -0.7751 2.0008 10 14 6.0413 -2.2413 4.3405 11 1 6.3217 -3.6621 4.0118 12 1 7.2873 -1.5877 4.8154 13 1 5.0098 -2.1742 5.4067 14 7 2.0196 -0.6924 -1.1995 15 6 1.4307 -2.0407 -1.3092 16 6 0.7194 -2.1212 -2.6791 17 6 1.4002 -1.0027 -3.4851 18 6 1.6881 0.0703 -2.4251 19 6 0.5233 -0.4888 -4.5862 20 6 -0.7355 0.0684 -4.6210 21 6 -1.2901 0.4537 -5.8284 22 6 -0.5776 0.2775 -7.0006 23 6 0.6828 -0.2818 -6.9717 24 6 1.2489 -0.6732 -5.7609 25 7 2.4879 -1.2534 -5.4778 26 6 2.6530 -1.4798 -4.1587 27 8 3.6235 -1.9713 -3.6225 28 1 -0.3633 -1.0215 0.1123 29 1 -0.3633 0.6079 0.8285 30 1 -0.3634 0.4135 -0.9409 31 1 1.7517 -1.7716 1.2054 32 1 1.6054 -0.2619 2.1369 33 1 3.9995 -1.0727 0.4257 34 1 3.8532 0.4370 1.3573 35 1 7.2196 -0.8003 2.1921 36 1 2.2166 -2.7940 -1.2549 37 1 0.7112 -2.1974 -0.5056 38 1 0.8894 -3.0914 -3.1458 39 1 -0.3480 -1.9281 -2.5714 40 1 0.8055 0.6884 -2.2607 41 1 2.5337 0.6872 -2.7290 42 1 -1.2905 0.2047 -3.7047 43 1 -2.2775 0.8904 -5.8556 44 1 -1.0105 0.5787 -7.9431 45 1 1.2328 -0.4166 -7.8913 46 1 3.1521 -1.4677 -6.1513 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:59 Heat of formation + Delta-G solvation = 8.792695 kcal Electronic energy + Delta-G solvation = -26689.013921 eV Core-core repulsion = 23157.505621 eV Total energy + Delta-G solvation = -3531.508300 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.10466 -38.98942 -38.31181 -35.75708 -34.73607 -32.79842 -31.40337 -29.91446 -29.57174 -28.77875 -28.14202 -25.26094 -24.16071 -22.78300 -22.43340 -21.73009 -20.88766 -19.74919 -18.76717 -17.90574 -17.23404 -16.28356 -16.01846 -15.63837 -15.53316 -15.33502 -14.55259 -14.38711 -14.19967 -13.86313 -13.79322 -13.51848 -13.11939 -12.84973 -12.76924 -12.41030 -12.35232 -11.89880 -11.87727 -11.66508 -11.56531 -11.39347 -11.06107 -10.99742 -10.90624 -10.85042 -10.69648 -10.38626 -10.10782 -9.86280 -9.53800 -9.17303 -9.11514 -8.81224 -8.24067 -8.15199 -7.71835 -5.80406 -3.81891 0.91488 1.02683 2.41916 2.84143 3.42222 3.47870 3.50362 3.50795 3.92738 4.04865 4.42861 4.56718 4.60295 4.64782 4.72418 4.73595 5.01197 5.08894 5.24577 5.27702 5.37811 5.44285 5.51496 5.54471 5.55045 5.65524 5.71390 5.72823 5.84770 5.85862 6.04251 6.10669 6.12986 6.19639 6.28633 6.38317 6.42222 6.47959 6.65655 6.69698 6.79544 6.92934 7.34407 7.42491 7.59888 7.92234 7.96818 8.15510 8.33061 8.64602 9.27431 9.80245 11.30544 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023596 B = 0.003249 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.376918 B = 8616.322904 C = 9339.948775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.074 3.926 3 H 0.078 0.922 4 C -0.099 4.099 5 C 0.029 3.971 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.892 5.892 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.276 1.276 14 N -0.499 5.499 15 C 0.043 3.957 16 C -0.109 4.109 17 C -0.066 4.066 18 C 0.073 3.927 19 C -0.124 4.124 20 C -0.061 4.061 21 C -0.144 4.144 22 C -0.085 4.085 23 C -0.145 4.145 24 C 0.151 3.849 25 N -0.671 5.671 26 C 0.542 3.458 27 O -0.458 6.458 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.034 0.966 34 H 0.008 0.992 35 H 0.258 0.742 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.124 0.876 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.041 2.370 -20.148 27.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.035 4.035 3 H 0.096 0.904 4 C -0.137 4.137 5 C -0.009 4.009 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.532 5.532 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.201 1.201 14 N -0.222 5.222 15 C -0.085 4.085 16 C -0.147 4.147 17 C -0.070 4.070 18 C -0.055 4.055 19 C -0.128 4.128 20 C -0.079 4.079 21 C -0.163 4.163 22 C -0.104 4.104 23 C -0.166 4.166 24 C 0.053 3.947 25 N -0.315 5.315 26 C 0.328 3.672 27 O -0.327 6.327 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.026 0.974 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.142 0.858 46 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -16.711 2.056 -19.627 25.860 hybrid contribution -0.064 -0.456 0.251 0.524 sum -16.775 1.600 -19.376 25.679 Atomic orbital electron populations 1.22555 0.98851 1.01849 1.01170 1.22059 0.91011 0.98831 0.91582 0.90386 1.21686 1.00909 0.98194 0.92927 1.19006 0.88051 0.96649 0.97146 1.21322 0.91828 1.34051 1.08474 0.93188 1.24999 0.97171 0.95805 0.96453 1.69989 1.02121 1.44235 1.36856 0.86699 0.78251 0.79881 0.83747 1.20820 1.21393 1.20086 1.63865 1.56410 1.01251 1.00632 1.22965 0.98018 0.92828 0.94645 1.22548 0.99552 0.96836 0.95805 1.20296 0.93037 0.98684 0.94992 1.22732 1.00559 0.94246 0.87999 1.19497 0.95734 1.04412 0.93143 1.20229 0.92871 0.96295 0.98531 1.21014 1.00570 1.02788 0.91977 1.20860 0.93424 0.97487 0.98604 1.20329 0.96863 1.04179 0.95222 1.18333 0.85767 0.95494 0.95060 1.44029 1.16857 1.60623 1.10028 1.19990 0.88289 0.77609 0.81286 1.90910 1.32615 1.40538 1.68659 0.92421 0.92241 0.93372 0.93385 0.93339 0.94769 0.97356 0.93275 0.89776 0.91483 0.90635 0.90251 0.92023 0.90173 0.85621 0.85415 0.85343 0.85769 0.75107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.45 8.56 37.16 0.32 -2.14 16 2 C 0.07 1.27 2.27 -67.71 -0.15 1.11 16 3 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 4 C -0.10 -2.10 4.54 -26.74 -0.12 -2.22 16 5 C 0.03 0.78 4.86 -27.89 -0.14 0.64 16 6 C -0.52 -15.39 9.11 -34.44 -0.31 -15.70 16 7 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -28.36 13.29 55.43 0.74 -27.62 16 10 Si 0.89 22.67 29.54 -169.99 -5.02 17.65 16 11 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 N -0.50 -8.69 4.61 -223.71 -1.03 -9.72 16 15 C 0.04 0.68 5.44 -2.65 -0.01 0.66 16 16 C -0.11 -1.35 5.95 -25.51 -0.15 -1.50 16 17 C -0.07 -0.86 0.78 -156.87 -0.12 -0.98 16 18 C 0.07 1.05 5.48 -2.87 -0.02 1.04 16 19 C -0.12 -1.33 5.10 -104.83 -0.53 -1.86 16 20 C -0.06 -0.52 9.98 -39.74 -0.40 -0.92 16 21 C -0.14 -1.02 10.06 -39.52 -0.40 -1.41 16 22 C -0.09 -0.57 10.02 -39.67 -0.40 -0.97 16 23 C -0.14 -1.13 10.06 -39.31 -0.40 -1.53 16 24 C 0.15 1.54 7.12 -83.49 -0.59 0.95 16 25 N -0.67 -7.58 5.92 -9.92 -0.06 -7.64 16 26 C 0.54 8.13 7.31 -11.28 -0.08 8.05 16 27 O -0.46 -8.93 17.93 5.55 0.10 -8.83 16 28 H 0.06 0.74 6.24 -51.93 -0.32 0.41 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.55 6.23 -51.93 -0.32 0.23 16 31 H 0.05 1.00 6.78 -51.93 -0.35 0.65 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.03 1.02 7.75 -51.92 -0.40 0.62 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.07 0.99 4.83 -51.93 -0.25 0.74 16 38 H 0.07 0.92 8.00 -51.93 -0.42 0.51 16 39 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 40 H 0.06 0.77 5.87 -51.93 -0.30 0.47 16 41 H 0.08 1.27 8.01 -51.93 -0.42 0.85 16 42 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 44 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 45 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 46 H 0.41 3.70 8.96 -40.82 -0.37 3.33 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -35.06 364.38 -10.31 -45.37 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.92 Total: 0.48 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -3.61 Total: -15.17 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.35 Total: -44.98 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.10 Total: -8.83 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.06 -10.31 -45.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.164 kcal (2) G-P(sol) polarization free energy of solvation -35.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds