Wall clock time and date at job start Tue Mar 31 2020 10:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46959 * 2 1 4 4 C 1.52996 * 109.47441 * 120.00175 * 2 1 3 5 5 C 1.52995 * 109.47461 * 184.99838 * 4 2 1 6 6 C 1.50698 * 109.47623 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99296 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00588 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99653 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00360 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46918 * 89.99978 * 10 8 6 12 12 H 1.48497 * 109.47045 * 209.99893 * 10 8 6 13 13 H 1.48497 * 109.46949 * 330.00132 * 10 8 6 14 14 N 1.46902 * 109.46980 * 240.00616 * 2 1 3 15 15 C 1.47544 * 111.00020 * 306.10112 * 14 2 1 16 16 C 1.54564 * 107.28810 * 123.22086 * 15 14 2 17 17 C 1.53760 * 102.88087 * 21.02750 * 16 15 14 18 18 C 1.48107 * 111.00258 * 67.04581 * 14 2 1 19 19 C 1.49847 * 112.05847 * 204.97900 * 17 16 15 20 20 C 1.37709 * 133.81036 * 57.72638 * 19 17 16 21 21 C 1.38341 * 120.08224 * 179.97438 * 20 19 17 22 22 C 1.38306 * 119.84980 * 0.02562 * 21 20 19 23 23 C 1.37931 * 120.30790 * 0.06616 * 22 21 20 24 24 C 1.39273 * 120.23965 * 359.96200 * 23 22 21 25 25 N 1.39708 * 130.79242 * 179.97438 * 24 23 22 26 26 C 1.34848 * 112.11931 * 179.97438 * 25 24 23 27 27 O 1.21286 * 126.76276 * 179.97438 * 26 25 24 28 28 H 1.09001 * 109.46929 * 186.27175 * 1 2 3 29 29 H 1.08996 * 109.47255 * 306.26953 * 1 2 3 30 30 H 1.09007 * 109.47141 * 66.27465 * 1 2 3 31 31 H 1.09007 * 109.46860 * 65.00083 * 4 2 1 32 32 H 1.08997 * 109.47054 * 305.00570 * 4 2 1 33 33 H 1.09007 * 109.47290 * 300.00837 * 5 4 2 34 34 H 1.09007 * 109.46884 * 60.00259 * 5 4 2 35 35 H 0.97006 * 120.00347 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.88118 * 242.63916 * 15 14 2 37 37 H 1.08996 * 109.88269 * 3.64103 * 15 14 2 38 38 H 1.08995 * 110.73407 * 139.37969 * 16 15 14 39 39 H 1.09004 * 110.72307 * 262.50818 * 16 15 14 40 40 H 1.09004 * 110.39104 * 333.80511 * 18 14 2 41 41 H 1.08994 * 110.39676 * 96.20097 * 18 14 2 42 42 H 1.07996 * 119.95945 * 359.96128 * 20 19 17 43 43 H 1.08002 * 120.07630 * 179.97438 * 21 20 19 44 44 H 1.08002 * 119.84431 * 180.02562 * 22 21 20 45 45 H 1.07995 * 119.87675 * 179.97438 * 23 22 21 46 46 H 0.96994 * 123.94184 * 0.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0673 -1.3243 2.5436 7 1 3.3689 -1.8054 3.2123 8 6 5.4185 -1.3606 2.8154 9 7 6.2690 -0.7751 2.0008 10 14 6.0413 -2.2413 4.3405 11 1 6.3217 -3.6621 4.0118 12 1 7.2873 -1.5877 4.8154 13 1 5.0098 -2.1742 5.4067 14 7 2.0196 -0.6924 -1.1995 15 6 1.4307 -2.0407 -1.3092 16 6 0.7194 -2.1212 -2.6791 17 6 1.4002 -1.0027 -3.4851 18 6 1.6881 0.0703 -2.4251 19 6 0.5233 -0.4888 -4.5862 20 6 -0.7355 0.0684 -4.6210 21 6 -1.2901 0.4537 -5.8284 22 6 -0.5776 0.2775 -7.0006 23 6 0.6828 -0.2818 -6.9717 24 6 1.2489 -0.6732 -5.7609 25 7 2.4879 -1.2534 -5.4778 26 6 2.6530 -1.4798 -4.1587 27 8 3.6235 -1.9713 -3.6225 28 1 -0.3633 -1.0215 0.1123 29 1 -0.3633 0.6079 0.8285 30 1 -0.3634 0.4135 -0.9409 31 1 1.7517 -1.7716 1.2054 32 1 1.6054 -0.2619 2.1369 33 1 3.9995 -1.0727 0.4257 34 1 3.8532 0.4370 1.3573 35 1 7.2196 -0.8003 2.1921 36 1 2.2166 -2.7940 -1.2549 37 1 0.7112 -2.1974 -0.5056 38 1 0.8894 -3.0914 -3.1458 39 1 -0.3480 -1.9281 -2.5714 40 1 0.8055 0.6884 -2.2607 41 1 2.5337 0.6872 -2.7290 42 1 -1.2905 0.2047 -3.7047 43 1 -2.2775 0.8904 -5.8556 44 1 -1.0105 0.5787 -7.9431 45 1 1.2328 -0.4166 -7.8913 46 1 3.1521 -1.4677 -6.1513 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172497627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:58 Heat of formation + Delta-G solvation = -15.208335 kcal Electronic energy + Delta-G solvation = -26690.054683 eV Core-core repulsion = 23157.505621 eV Total energy + Delta-G solvation = -3532.549062 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.05398 -40.07814 -39.38114 -36.71730 -36.20382 -34.75998 -32.55112 -31.37199 -30.41827 -30.07641 -29.09609 -27.09331 -25.37136 -23.80535 -23.46238 -22.80420 -22.50361 -20.77769 -20.15852 -18.79017 -18.36266 -18.14023 -17.33946 -16.67851 -16.61699 -16.51434 -16.30902 -15.37571 -15.11875 -14.93587 -14.79203 -14.65958 -14.46179 -14.27389 -13.99470 -13.77320 -13.61958 -13.37131 -12.99844 -12.86633 -12.84464 -12.68444 -12.52402 -12.46195 -12.34853 -12.08668 -11.85096 -11.80658 -11.66135 -11.41773 -11.24162 -11.00132 -10.90451 -10.50313 -9.79158 -9.03772 -8.94934 -8.14287 -6.25864 0.18332 0.42082 1.36951 1.39028 1.40148 1.50638 1.96168 2.42298 2.85620 2.92658 3.04497 3.17649 3.39067 3.62068 3.65549 3.90264 4.07022 4.18159 4.18935 4.28238 4.33315 4.43577 4.47382 4.50803 4.60920 4.65003 4.65991 4.76840 4.79092 4.86921 4.95202 5.01348 5.06851 5.10386 5.17752 5.23501 5.34679 5.47354 5.50527 5.58025 5.60900 5.65921 5.81297 5.87286 6.01543 6.09975 6.16706 6.32019 6.33484 6.93629 6.95039 7.42425 8.97373 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023596 B = 0.003249 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.376918 B = 8616.322904 C = 9339.948775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.079 3.921 3 H 0.064 0.936 4 C -0.088 4.088 5 C 0.039 3.961 6 C -0.541 4.541 7 H 0.058 0.942 8 C -0.006 4.006 9 N -0.935 5.935 10 Si 0.965 3.035 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.259 1.259 14 N -0.538 5.538 15 C 0.046 3.954 16 C -0.096 4.096 17 C -0.061 4.061 18 C 0.078 3.922 19 C -0.137 4.137 20 C -0.065 4.065 21 C -0.135 4.135 22 C -0.081 4.081 23 C -0.140 4.140 24 C 0.123 3.877 25 N -0.661 5.661 26 C 0.531 3.469 27 O -0.525 6.525 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.057 0.943 33 H -0.007 1.007 34 H -0.024 1.024 35 H 0.260 0.740 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.143 0.857 43 H 0.158 0.842 44 H 0.161 0.839 45 H 0.143 0.857 46 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.988 2.902 -21.118 30.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.030 4.030 3 H 0.083 0.917 4 C -0.125 4.125 5 C 0.002 3.998 6 C -0.579 4.579 7 H 0.077 0.923 8 C -0.203 4.203 9 N -0.576 5.576 10 Si 0.789 3.211 11 H -0.201 1.201 12 H -0.207 1.207 13 H -0.183 1.183 14 N -0.262 5.262 15 C -0.081 4.081 16 C -0.134 4.134 17 C -0.065 4.065 18 C -0.049 4.049 19 C -0.140 4.140 20 C -0.083 4.083 21 C -0.153 4.153 22 C -0.100 4.100 23 C -0.161 4.161 24 C 0.027 3.973 25 N -0.305 5.305 26 C 0.318 3.682 27 O -0.399 6.399 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.011 0.989 34 H -0.005 1.005 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.132 0.868 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.161 0.839 43 H 0.175 0.825 44 H 0.178 0.822 45 H 0.161 0.839 46 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -20.721 2.611 -20.646 29.367 hybrid contribution 1.154 -0.548 0.413 1.342 sum -19.567 2.063 -20.233 28.222 Atomic orbital electron populations 1.22402 0.94700 1.02889 1.03061 1.21854 0.94183 0.97178 0.89757 0.91743 1.21495 0.96327 0.99006 0.95722 1.18806 0.92462 0.93803 0.94767 1.21806 0.92548 1.34264 1.09292 0.92337 1.26043 0.97473 0.96575 1.00224 1.70160 1.02529 1.45740 1.39183 0.85461 0.77913 0.78410 0.79321 1.20088 1.20727 1.18311 1.63610 1.58381 1.02402 1.01808 1.22815 0.97043 0.90978 0.97300 1.22495 1.00824 0.96751 0.93378 1.20162 0.92724 0.98261 0.95314 1.22650 1.00545 0.94478 0.87275 1.19424 0.96716 1.06081 0.91775 1.20501 0.91888 0.95762 1.00146 1.21433 1.01543 1.01120 0.91243 1.21309 0.92595 0.95990 1.00078 1.20666 0.97445 1.03072 0.94919 1.18609 0.85193 0.97268 0.96274 1.43879 1.17826 1.59811 1.08995 1.20439 0.88278 0.76861 0.82593 1.90866 1.34992 1.43818 1.70209 0.91585 0.91151 0.90790 0.93344 0.92470 0.98862 1.00526 0.93123 0.94161 0.90257 0.90827 0.86822 0.89220 0.92809 0.83893 0.82455 0.82193 0.83885 0.74253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.56 71.98 0.62 -3.47 16 2 C 0.08 2.74 2.27 44.91 0.10 2.85 16 3 H 0.06 2.39 8.12 -2.38 -0.02 2.37 16 4 C -0.09 -3.82 4.54 30.59 0.14 -3.68 16 5 C 0.04 2.25 4.86 29.85 0.15 2.39 16 6 C -0.54 -33.25 9.11 25.60 0.23 -33.01 16 7 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 8 C -0.01 -0.39 5.46 84.65 0.46 0.08 16 9 N -0.94 -62.09 13.29 21.44 0.28 -61.80 16 10 Si 0.96 47.45 29.54 68.60 2.03 49.48 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 13 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 14 N -0.54 -19.69 4.61 -861.68 -3.97 -23.67 16 15 C 0.05 1.51 5.44 86.71 0.47 1.98 16 16 C -0.10 -2.34 5.95 31.38 0.19 -2.15 16 17 C -0.06 -1.58 0.78 -53.71 -0.04 -1.63 16 18 C 0.08 2.31 5.48 86.25 0.47 2.79 16 19 C -0.14 -2.65 5.10 -20.00 -0.10 -2.75 16 20 C -0.06 -0.85 9.98 22.17 0.22 -0.63 16 21 C -0.13 -1.22 10.06 22.31 0.22 -0.99 16 22 C -0.08 -0.71 10.02 22.21 0.22 -0.49 16 23 C -0.14 -1.77 10.06 22.45 0.23 -1.54 16 24 C 0.12 2.34 7.12 38.39 0.27 2.61 16 25 N -0.66 -15.47 5.92 -303.63 -1.80 -17.26 16 26 C 0.53 17.09 7.31 87.44 0.64 17.73 16 27 O -0.52 -22.67 17.93 -3.05 -0.05 -22.73 16 28 H 0.07 1.48 6.24 -2.39 -0.01 1.47 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.40 6.23 -2.38 -0.01 1.38 16 31 H 0.05 2.08 6.78 -2.38 -0.02 2.06 16 32 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 33 H -0.01 -0.46 7.75 -2.38 -0.02 -0.48 16 34 H -0.02 -1.49 8.14 -2.38 -0.02 -1.51 16 35 H 0.26 16.20 8.31 -92.70 -0.77 15.43 16 36 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 2.32 4.83 -2.39 -0.01 2.31 16 38 H 0.07 1.82 8.00 -2.39 -0.02 1.80 16 39 H 0.11 1.99 8.04 -2.38 -0.02 1.97 16 40 H 0.09 2.09 5.87 -2.39 -0.01 2.07 16 41 H 0.05 1.84 8.01 -2.39 -0.02 1.82 16 42 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 43 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 44 H 0.16 0.43 8.06 -2.91 -0.02 0.41 16 45 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 46 H 0.42 7.99 8.96 -92.71 -0.83 7.16 16 Total: -1.00 -83.42 364.38 1.14 -82.28 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.16 Total: 13.64 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 4.49 Total: -19.94 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -5.49 Total: -102.73 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.05 Total: -22.73 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -83.42 1.14 -82.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.073 kcal (2) G-P(sol) polarization free energy of solvation -83.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds