Wall clock time and date at job start Tue Mar 31 2020 10:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 S 1.81396 * 109.47360 * 120.00179 * 2 1 3 5 5 C 1.81405 * 103.00151 * 175.00153 * 4 2 1 6 6 C 1.50701 * 109.47209 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99626 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00063 * 179.97438 * 6 5 4 9 9 C 1.48148 * 127.83636 * 0.02562 * 8 6 5 10 10 C 1.54390 * 104.61473 * 219.58214 * 9 8 6 11 11 H 1.09000 * 110.33690 * 95.00969 * 10 9 8 12 12 C 1.52995 * 110.34124 * 217.15647 * 10 9 8 13 13 C 1.54283 * 104.96058 * 336.13491 * 10 9 8 14 14 C 1.53003 * 110.34206 * 241.12370 * 13 10 9 15 15 C 1.53006 * 110.34016 * 118.97886 * 13 10 9 16 16 N 1.46500 * 109.46983 * 180.02562 * 15 13 10 17 17 C 1.36933 * 119.99866 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00489 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99816 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00150 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00180 * 359.97438 * 19 17 16 22 22 H 1.48509 * 109.47247 * 89.99775 * 21 19 17 23 23 H 1.48493 * 109.47527 * 209.99843 * 21 19 17 24 24 H 1.48503 * 109.47164 * 330.00103 * 21 19 17 25 25 C 1.48147 * 127.84046 * 179.70273 * 8 6 5 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 33 33 H 1.09001 * 109.46585 * 300.00098 * 5 4 2 34 34 H 1.08994 * 109.47075 * 59.99683 * 5 4 2 35 35 H 1.08994 * 110.40806 * 338.37167 * 9 8 6 36 36 H 1.09003 * 110.40547 * 100.68281 * 9 8 6 37 37 H 1.09000 * 109.47667 * 58.55300 * 12 10 9 38 38 H 1.09002 * 109.47283 * 178.54960 * 12 10 9 39 39 H 1.09004 * 109.47616 * 298.55080 * 12 10 9 40 40 H 1.09004 * 109.46442 * 60.00529 * 14 13 10 41 41 H 1.09001 * 109.47154 * 179.97438 * 14 13 10 42 42 H 1.08993 * 109.47637 * 300.00522 * 14 13 10 43 43 H 1.09003 * 109.46681 * 299.99653 * 15 13 10 44 44 H 1.08998 * 109.47302 * 59.99870 * 15 13 10 45 45 H 0.96998 * 120.00122 * 359.97438 * 16 15 13 46 46 H 0.96999 * 120.00553 * 180.02562 * 20 19 17 47 47 H 1.09002 * 110.40491 * 259.20599 * 25 8 6 48 48 H 1.09005 * 110.40165 * 21.62985 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8551 1.4810 5 6 3.9309 -0.8874 1.2289 6 6 4.5895 -1.5785 2.3949 7 8 3.9137 -2.0066 3.3066 8 7 5.9294 -1.7207 2.4247 9 6 6.9140 -1.2679 1.4146 10 6 7.9493 -2.4108 1.3402 11 1 7.7025 -3.0932 0.5268 12 6 9.3564 -1.8419 1.1474 13 6 7.8423 -3.1343 2.6987 14 6 9.1760 -3.0643 3.4451 15 6 7.4247 -4.5919 2.4935 16 7 7.3284 -5.2599 3.7937 17 6 6.9671 -6.5790 3.8606 18 1 6.7527 -7.1269 2.9550 19 6 6.8763 -7.2121 5.0927 20 7 6.5286 -8.4799 5.1571 21 14 7.2477 -6.2649 6.6592 22 1 6.0001 -5.6398 7.1674 23 1 7.7884 -7.1943 7.6834 24 1 8.2499 -5.2072 6.3723 25 6 6.7523 -2.3595 3.4780 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 4.1591 -1.4281 0.3104 34 1 4.3053 0.1333 1.1522 35 1 6.4303 -1.1296 0.4477 36 1 7.3901 -0.3417 1.7365 37 1 9.5940 -1.1721 1.9738 38 1 10.0782 -2.6584 1.1226 39 1 9.3998 -1.2900 0.2084 40 1 9.4413 -2.0212 3.6178 41 1 9.0845 -3.5787 4.4017 42 1 9.9523 -3.5425 2.8478 43 1 6.4556 -4.6254 1.9955 44 1 8.1673 -5.0994 1.8779 45 1 7.5205 -4.7678 4.6072 46 1 6.4648 -8.9223 6.0180 47 1 7.2049 -1.6023 4.1182 48 1 6.1463 -3.0458 4.0697 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180639636.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:07 Heat of formation + Delta-G solvation = -23.505025 kcal Electronic energy + Delta-G solvation = -24989.697658 eV Core-core repulsion = 21592.232776 eV Total energy + Delta-G solvation = -3397.464883 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.36942 -38.31453 -35.09338 -34.92025 -33.37083 -31.66106 -30.62637 -29.79868 -27.58837 -26.98472 -25.79837 -25.59075 -23.06826 -22.21242 -21.07105 -19.48648 -18.60097 -17.77873 -16.96213 -16.68125 -16.04403 -15.69307 -15.09232 -14.81217 -14.65369 -14.53696 -14.30990 -13.84995 -13.82688 -13.54256 -13.36535 -12.96088 -12.66455 -12.63887 -12.54192 -12.16956 -12.07837 -11.79274 -11.71339 -11.62490 -11.56812 -11.49382 -11.43451 -11.27507 -10.86094 -10.57346 -10.37296 -10.22631 -9.99451 -9.89505 -9.87525 -9.51017 -8.85460 -8.70015 -7.78461 -7.17892 -5.71498 -3.06655 1.26964 2.33610 2.60581 2.95898 3.39959 3.45314 3.50167 4.26527 4.43171 4.45662 4.51957 4.63351 4.64349 4.75994 4.81439 4.90501 4.95081 5.14074 5.21670 5.23364 5.27584 5.31136 5.36208 5.40044 5.45202 5.48483 5.58707 5.61926 5.70395 5.73982 5.76091 5.80741 5.81799 5.91723 5.99843 6.08984 6.17102 6.27676 6.38190 6.54158 6.65578 6.75685 7.52717 8.03916 8.14337 8.47265 9.25998 9.98380 10.17695 11.47153 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.003675 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.946165 B = 7616.563283 C = 8979.813811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 C -0.148 4.148 4 S -0.176 6.176 5 C -0.121 4.121 6 C 0.548 3.452 7 O -0.511 6.511 8 N -0.618 5.618 9 C 0.105 3.895 10 C -0.097 4.097 11 H 0.085 0.915 12 C -0.142 4.142 13 C -0.080 4.080 14 C -0.136 4.136 15 C 0.174 3.826 16 N -0.753 5.753 17 C -0.242 4.242 18 H 0.089 0.911 19 C 0.005 3.995 20 N -0.935 5.935 21 Si 0.881 3.119 22 H -0.282 1.282 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.113 3.887 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.026 0.974 44 H 0.029 0.971 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.068 0.932 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.194 23.679 -14.034 27.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.213 4.213 3 C -0.207 4.207 4 S 0.051 5.949 5 C -0.272 4.272 6 C 0.334 3.666 7 O -0.385 6.385 8 N -0.353 5.353 9 C -0.019 4.019 10 C -0.117 4.117 11 H 0.103 0.897 12 C -0.199 4.199 13 C -0.081 4.081 14 C -0.194 4.194 15 C 0.047 3.953 16 N -0.399 5.399 17 C -0.372 4.372 18 H 0.107 0.893 19 C -0.190 4.190 20 N -0.583 5.583 21 Si 0.711 3.289 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.009 4.009 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.043 0.957 44 H 0.047 0.953 45 H 0.194 0.806 46 H 0.069 0.931 47 H 0.086 0.914 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.360 22.811 -12.752 26.240 hybrid contribution 1.090 0.989 0.010 1.472 sum -1.269 23.800 -12.743 27.027 Atomic orbital electron populations 1.21562 0.91579 1.03195 1.02650 1.23258 1.00190 0.98738 0.99089 1.22103 1.00916 0.94704 1.02929 1.87672 1.01267 1.76497 1.29510 1.23461 0.97440 1.04683 1.01652 1.19179 0.80500 0.79840 0.87054 1.90808 1.61651 1.48287 1.37793 1.48783 1.04334 1.58571 1.23605 1.22529 0.89770 0.97458 0.92117 1.22125 0.95040 0.96380 0.98119 0.89700 1.21893 0.95656 1.01177 1.01214 1.21844 0.95312 0.96689 0.94292 1.21903 0.95622 1.00877 1.00952 1.20616 0.97807 0.87873 0.89004 1.42729 1.84509 1.10360 1.02282 1.19025 1.38271 0.85178 0.94684 0.89327 1.24647 1.01574 0.95741 0.97068 1.69695 1.54472 1.09786 1.24310 0.86605 0.78256 0.79294 0.84727 1.20889 1.21707 1.20358 1.22638 0.91830 0.96211 0.90246 0.91615 0.91457 0.91195 0.89574 0.92744 0.91854 0.91256 0.87435 0.87578 0.90710 0.90894 0.92085 0.91638 0.92930 0.92810 0.91972 0.91709 0.95650 0.95315 0.80582 0.93094 0.91394 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 9.20 37.16 0.34 -0.63 16 2 C -0.08 -0.69 3.38 -26.73 -0.09 -0.78 16 3 C -0.15 -0.98 9.10 37.16 0.34 -0.64 16 4 S -0.18 -2.23 20.29 -107.50 -2.18 -4.41 16 5 C -0.12 -1.35 5.10 36.01 0.18 -1.17 16 6 C 0.55 8.56 7.93 -10.99 -0.09 8.47 16 7 O -0.51 -10.57 16.13 5.55 0.09 -10.48 16 8 N -0.62 -8.56 3.31 -169.06 -0.56 -9.12 16 9 C 0.10 1.00 6.45 -2.41 -0.02 0.98 16 10 C -0.10 -1.03 3.30 -89.22 -0.29 -1.33 16 11 H 0.08 0.93 7.71 -51.93 -0.40 0.53 16 12 C -0.14 -1.18 7.93 37.16 0.29 -0.88 16 13 C -0.08 -1.16 0.73 -152.89 -0.11 -1.27 16 14 C -0.14 -1.83 7.11 37.16 0.26 -1.56 16 15 C 0.17 3.38 4.96 -4.04 -0.02 3.36 16 16 N -0.75 -18.17 4.60 -59.91 -0.28 -18.45 16 17 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 18 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 20 N -0.93 -30.24 13.97 55.49 0.78 -29.46 16 21 Si 0.88 22.85 27.73 -169.99 -4.71 18.14 16 22 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 23 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 24 H -0.28 -6.62 6.52 56.52 0.37 -6.26 16 25 C 0.11 1.77 5.93 -2.20 -0.01 1.75 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.05 0.34 6.92 -51.93 -0.36 -0.02 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.11 1.00 7.95 -51.92 -0.41 0.59 16 34 H 0.11 0.90 7.14 -51.93 -0.37 0.52 16 35 H 0.07 0.55 7.30 -51.93 -0.38 0.17 16 36 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 37 H 0.06 0.48 6.62 -51.93 -0.34 0.14 16 38 H 0.06 0.58 6.99 -51.93 -0.36 0.22 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.05 0.58 6.68 -51.93 -0.35 0.23 16 41 H 0.06 0.99 6.74 -51.93 -0.35 0.64 16 42 H 0.06 0.83 6.89 -51.93 -0.36 0.47 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.36 8.50 3.85 -40.82 -0.16 8.34 16 46 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 47 H 0.07 0.94 7.84 -51.93 -0.41 0.53 16 48 H 0.10 1.90 6.97 -51.93 -0.36 1.54 16 LS Contribution 381.02 15.07 5.74 5.74 Total: -1.00 -35.72 381.02 -9.00 -44.72 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -8.42 Total: 4.17 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 0.54 Total: -0.84 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.06 Total: -57.03 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.71 Total: 18.14 kcal Atomic # 16 Polarization: -2.23 SS G_CDS: -2.18 Total: -4.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.72 -9.00 -44.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180639636.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.215 kcal (2) G-P(sol) polarization free energy of solvation -35.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds