Wall clock time and date at job start Tue Mar 31 2020 10:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 S 1.81396 * 109.47360 * 120.00179 * 2 1 3 5 5 C 1.81405 * 103.00151 * 175.00153 * 4 2 1 6 6 C 1.50701 * 109.47209 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99626 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00063 * 179.97438 * 6 5 4 9 9 C 1.48148 * 127.83636 * 0.02562 * 8 6 5 10 10 C 1.54390 * 104.61473 * 219.58214 * 9 8 6 11 11 H 1.09000 * 110.33690 * 95.00969 * 10 9 8 12 12 C 1.52995 * 110.34124 * 217.15647 * 10 9 8 13 13 C 1.54283 * 104.96058 * 336.13491 * 10 9 8 14 14 C 1.53003 * 110.34206 * 241.12370 * 13 10 9 15 15 C 1.53006 * 110.34016 * 118.97886 * 13 10 9 16 16 N 1.46500 * 109.46983 * 180.02562 * 15 13 10 17 17 C 1.36933 * 119.99866 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00489 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99816 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00150 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00180 * 359.97438 * 19 17 16 22 22 H 1.48509 * 109.47247 * 89.99775 * 21 19 17 23 23 H 1.48493 * 109.47527 * 209.99843 * 21 19 17 24 24 H 1.48503 * 109.47164 * 330.00103 * 21 19 17 25 25 C 1.48147 * 127.84046 * 179.70273 * 8 6 5 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 33 33 H 1.09001 * 109.46585 * 300.00098 * 5 4 2 34 34 H 1.08994 * 109.47075 * 59.99683 * 5 4 2 35 35 H 1.08994 * 110.40806 * 338.37167 * 9 8 6 36 36 H 1.09003 * 110.40547 * 100.68281 * 9 8 6 37 37 H 1.09000 * 109.47667 * 58.55300 * 12 10 9 38 38 H 1.09002 * 109.47283 * 178.54960 * 12 10 9 39 39 H 1.09004 * 109.47616 * 298.55080 * 12 10 9 40 40 H 1.09004 * 109.46442 * 60.00529 * 14 13 10 41 41 H 1.09001 * 109.47154 * 179.97438 * 14 13 10 42 42 H 1.08993 * 109.47637 * 300.00522 * 14 13 10 43 43 H 1.09003 * 109.46681 * 299.99653 * 15 13 10 44 44 H 1.08998 * 109.47302 * 59.99870 * 15 13 10 45 45 H 0.96998 * 120.00122 * 359.97438 * 16 15 13 46 46 H 0.96999 * 120.00553 * 180.02562 * 20 19 17 47 47 H 1.09002 * 110.40491 * 259.20599 * 25 8 6 48 48 H 1.09005 * 110.40165 * 21.62985 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8551 1.4810 5 6 3.9309 -0.8874 1.2289 6 6 4.5895 -1.5785 2.3949 7 8 3.9137 -2.0066 3.3066 8 7 5.9294 -1.7207 2.4247 9 6 6.9140 -1.2679 1.4146 10 6 7.9493 -2.4108 1.3402 11 1 7.7025 -3.0932 0.5268 12 6 9.3564 -1.8419 1.1474 13 6 7.8423 -3.1343 2.6987 14 6 9.1760 -3.0643 3.4451 15 6 7.4247 -4.5919 2.4935 16 7 7.3284 -5.2599 3.7937 17 6 6.9671 -6.5790 3.8606 18 1 6.7527 -7.1269 2.9550 19 6 6.8763 -7.2121 5.0927 20 7 6.5286 -8.4799 5.1571 21 14 7.2477 -6.2649 6.6592 22 1 6.0001 -5.6398 7.1674 23 1 7.7884 -7.1943 7.6834 24 1 8.2499 -5.2072 6.3723 25 6 6.7523 -2.3595 3.4780 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 4.1591 -1.4281 0.3104 34 1 4.3053 0.1333 1.1522 35 1 6.4303 -1.1296 0.4477 36 1 7.3901 -0.3417 1.7365 37 1 9.5940 -1.1721 1.9738 38 1 10.0782 -2.6584 1.1226 39 1 9.3998 -1.2900 0.2084 40 1 9.4413 -2.0212 3.6178 41 1 9.0845 -3.5787 4.4017 42 1 9.9523 -3.5425 2.8478 43 1 6.4556 -4.6254 1.9955 44 1 8.1673 -5.0994 1.8779 45 1 7.5205 -4.7678 4.6072 46 1 6.4648 -8.9223 6.0180 47 1 7.2049 -1.6023 4.1182 48 1 6.1463 -3.0458 4.0697 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180639636.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:06 Heat of formation + Delta-G solvation = -47.365694 kcal Electronic energy + Delta-G solvation = -24990.732335 eV Core-core repulsion = 21592.232776 eV Total energy + Delta-G solvation = -3398.499559 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48154 -39.54610 -36.67828 -35.65411 -34.74997 -33.43130 -31.82185 -31.05221 -28.29848 -28.09138 -27.01952 -26.65562 -24.82283 -22.89133 -22.42735 -20.57941 -20.19494 -19.30511 -18.19391 -17.56474 -17.11808 -16.64220 -16.57570 -16.32675 -15.77460 -15.60909 -15.35044 -15.13731 -14.91772 -14.65306 -14.48611 -14.30688 -14.02699 -13.61807 -13.57151 -13.17908 -13.12216 -13.05110 -12.95374 -12.70159 -12.63840 -12.44834 -12.29307 -12.21867 -12.13786 -12.10650 -11.91244 -11.63339 -11.36333 -11.20690 -11.10497 -11.03933 -10.66587 -9.81783 -9.34042 -8.73978 -8.08306 -5.40773 0.43276 1.28559 1.35888 1.40574 1.46944 1.57098 1.92288 2.42461 3.22738 3.27977 3.48990 3.59360 3.73479 3.85894 3.90917 3.95239 4.00309 4.13225 4.18453 4.29840 4.34470 4.34987 4.55104 4.63782 4.68549 4.73320 4.75232 4.78628 4.83720 4.85657 4.87761 4.96477 4.97933 5.01173 5.09961 5.18964 5.24189 5.27624 5.29644 5.38264 5.43697 5.65114 5.69596 6.16031 6.46353 7.01216 7.02880 7.79006 7.97692 9.13693 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.003675 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.946165 B = 7616.563283 C = 8979.813811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.062 4.062 3 C -0.145 4.145 4 S -0.271 6.271 5 C -0.096 4.096 6 C 0.535 3.465 7 O -0.578 6.578 8 N -0.618 5.618 9 C 0.104 3.896 10 C -0.090 4.090 11 H 0.079 0.921 12 C -0.137 4.137 13 C -0.072 4.072 14 C -0.133 4.133 15 C 0.172 3.828 16 N -0.753 5.753 17 C -0.234 4.234 18 H 0.053 0.947 19 C -0.063 4.063 20 N -0.983 5.983 21 Si 0.949 3.051 22 H -0.289 1.289 23 H -0.288 1.288 24 H -0.244 1.244 25 C 0.110 3.890 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.130 0.870 34 H 0.142 0.858 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.001 0.999 44 H 0.031 0.969 45 H 0.366 0.634 46 H 0.258 0.742 47 H 0.092 0.908 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.894 27.952 -16.054 32.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.190 4.190 3 C -0.204 4.204 4 S -0.045 6.045 5 C -0.247 4.247 6 C 0.324 3.676 7 O -0.457 6.457 8 N -0.351 5.351 9 C -0.018 4.018 10 C -0.110 4.110 11 H 0.097 0.903 12 C -0.194 4.194 13 C -0.074 4.074 14 C -0.190 4.190 15 C 0.046 3.954 16 N -0.399 5.399 17 C -0.365 4.365 18 H 0.071 0.929 19 C -0.254 4.254 20 N -0.634 5.634 21 Si 0.776 3.224 22 H -0.215 1.215 23 H -0.214 1.214 24 H -0.168 1.168 25 C -0.014 4.014 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.148 0.852 34 H 0.160 0.840 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.051 0.949 42 H 0.091 0.909 43 H 0.019 0.981 44 H 0.048 0.952 45 H 0.200 0.800 46 H 0.067 0.933 47 H 0.110 0.890 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.213 27.143 -14.838 30.934 hybrid contribution 0.384 -0.382 0.497 0.735 sum 0.170 26.761 -14.340 30.361 Atomic orbital electron populations 1.21611 0.91276 1.02719 1.03499 1.23318 1.00203 0.99220 0.96261 1.22092 1.01529 0.93233 1.03501 1.88058 1.04268 1.78216 1.33930 1.23348 0.95040 1.06287 0.99978 1.20025 0.80817 0.79289 0.87510 1.90777 1.63280 1.51165 1.40496 1.48920 1.04453 1.57639 1.24103 1.22887 0.88532 0.97810 0.92524 1.22127 0.97473 0.96393 0.95022 0.90254 1.21871 0.93151 1.01280 1.03094 1.21750 0.95432 0.93052 0.97148 1.21911 0.94871 1.02971 0.99249 1.20767 0.96596 0.91411 0.86608 1.42728 1.84060 1.08691 1.04466 1.19021 1.36935 0.87116 0.93442 0.92914 1.25484 1.02315 0.96795 1.00835 1.69874 1.56552 1.11840 1.25139 0.85506 0.78501 0.78616 0.79822 1.21550 1.21405 1.16801 1.22567 0.91638 0.96207 0.90938 0.92380 0.92676 0.88533 0.88288 0.91792 0.89687 0.92154 0.85171 0.84024 0.87631 0.87701 0.90899 0.92280 0.90368 0.89156 0.94885 0.90908 0.98087 0.95150 0.80026 0.93278 0.89010 0.93914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.20 71.98 0.66 -1.13 16 2 C -0.06 -0.89 3.38 30.59 0.10 -0.79 16 3 C -0.14 -1.46 9.10 71.98 0.66 -0.81 16 4 S -0.27 -6.86 20.29 -56.49 -1.15 -8.01 16 5 C -0.10 -1.94 5.10 71.24 0.36 -1.57 16 6 C 0.53 16.52 7.93 87.66 0.70 17.22 16 7 O -0.58 -25.15 16.13 -3.05 -0.05 -25.20 16 8 N -0.62 -16.02 3.31 -807.16 -2.67 -18.70 16 9 C 0.10 1.49 6.45 86.53 0.56 2.05 16 10 C -0.09 -1.59 3.30 -9.89 -0.03 -1.63 16 11 H 0.08 1.52 7.71 -2.39 -0.02 1.50 16 12 C -0.14 -1.55 7.93 71.98 0.57 -0.98 16 13 C -0.07 -1.98 0.73 -51.14 -0.04 -2.01 16 14 C -0.13 -3.19 7.11 71.98 0.51 -2.67 16 15 C 0.17 6.81 4.96 86.38 0.43 7.24 16 16 N -0.75 -37.32 4.60 -343.45 -1.58 -38.90 16 17 C -0.23 -14.25 10.47 84.04 0.88 -13.37 16 18 H 0.05 3.51 8.06 -2.91 -0.02 3.49 16 19 C -0.06 -3.93 5.50 84.86 0.47 -3.47 16 20 N -0.98 -66.25 13.97 21.65 0.30 -65.94 16 21 Si 0.95 48.35 27.73 68.60 1.90 50.25 16 22 H -0.29 -14.95 7.11 99.48 0.71 -14.25 16 23 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 24 H -0.24 -10.95 6.52 99.48 0.65 -10.30 16 25 C 0.11 3.33 5.93 86.67 0.51 3.84 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 0.53 6.92 -2.39 -0.02 0.52 16 31 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.13 2.01 7.95 -2.39 -0.02 1.99 16 34 H 0.14 1.81 7.14 -2.39 -0.02 1.79 16 35 H 0.11 0.94 7.30 -2.39 -0.02 0.92 16 36 H 0.10 0.97 7.87 -2.39 -0.02 0.95 16 37 H 0.07 0.69 6.62 -2.39 -0.02 0.68 16 38 H 0.06 0.79 6.99 -2.39 -0.02 0.77 16 39 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 40 H 0.09 1.52 6.68 -2.38 -0.02 1.51 16 41 H 0.03 0.98 6.74 -2.39 -0.02 0.96 16 42 H 0.07 1.64 6.89 -2.39 -0.02 1.62 16 43 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.37 17.35 3.85 -92.71 -0.36 16.99 16 46 H 0.26 16.52 8.31 -92.71 -0.77 15.75 16 47 H 0.09 2.32 7.84 -2.39 -0.02 2.30 16 48 H 0.04 1.76 6.97 -2.38 -0.02 1.74 16 Total: -1.00 -86.39 381.02 3.61 -82.78 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.51 Total: 21.81 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 6.34 Total: 1.91 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -3.95 Total: -123.54 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.05 Total: -25.20 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 1.90 Total: 50.25 kcal Atomic # 16 Polarization: -6.86 SS G_CDS: -1.15 Total: -8.01 kcal Total: -86.39 3.61 -82.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180639636.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.412 kcal (2) G-P(sol) polarization free energy of solvation -86.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds