Wall clock time and date at job start Tue Mar 31 2020 10:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 C 1.81402 * 103.00333 * 2 1 4 4 C 1.52995 * 109.47476 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47165 * 304.99700 * 4 3 2 6 6 C 1.52993 * 109.47394 * 64.99704 * 4 3 2 7 7 C 1.50705 * 109.47111 * 184.99969 * 4 3 2 8 8 O 1.21278 * 119.99761 * 331.08864 * 7 4 3 9 9 N 1.34770 * 119.99941 * 151.08974 * 7 4 3 10 10 C 1.48145 * 127.83949 * 184.58379 * 9 7 4 11 11 C 1.54792 * 104.41831 * 140.36964 * 10 9 7 12 12 H 1.09004 * 110.28949 * 142.98908 * 11 10 9 13 13 C 1.53000 * 110.52884 * 265.22967 * 11 10 9 14 14 C 1.54289 * 104.91872 * 24.17135 * 11 10 9 15 15 C 1.53003 * 110.42779 * 240.88930 * 14 11 10 16 16 C 1.52991 * 110.34358 * 118.67713 * 14 11 10 17 17 N 1.46508 * 109.47307 * 183.00890 * 16 14 11 18 18 C 1.36934 * 120.00289 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99594 * 359.97438 * 18 17 16 20 20 C 1.38807 * 120.00183 * 180.02562 * 18 17 16 21 21 N 1.31621 * 119.99884 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00006 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47346 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47243 * 120.00312 * 22 20 18 25 25 H 1.48510 * 109.46995 * 239.99711 * 22 20 18 26 26 C 1.48156 * 127.83937 * 4.91030 * 9 7 4 27 27 H 1.09001 * 109.47669 * 300.00441 * 1 2 3 28 28 H 1.09005 * 109.47191 * 60.00174 * 1 2 3 29 29 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46858 * 299.99981 * 3 2 1 31 31 H 1.09001 * 109.47099 * 59.99433 * 3 2 1 32 32 H 1.09002 * 109.47032 * 294.53973 * 6 4 3 33 33 H 1.09007 * 109.47154 * 54.53790 * 6 4 3 34 34 H 1.08999 * 109.47295 * 174.53968 * 6 4 3 35 35 H 1.08992 * 110.41288 * 259.20474 * 10 9 7 36 36 H 1.09002 * 110.40397 * 21.63874 * 10 9 7 37 37 H 1.08995 * 109.47392 * 175.59706 * 13 11 10 38 38 H 1.09002 * 109.46670 * 295.59687 * 13 11 10 39 39 H 1.09000 * 109.46955 * 55.59031 * 13 11 10 40 40 H 1.09002 * 109.46750 * 177.03879 * 15 14 11 41 41 H 1.08994 * 109.47457 * 297.03835 * 15 14 11 42 42 H 1.09000 * 109.46933 * 57.04566 * 15 14 11 43 43 H 1.09003 * 109.47513 * 303.00762 * 16 14 11 44 44 H 1.09010 * 109.47309 * 63.00815 * 16 14 11 45 45 H 0.96995 * 119.99425 * 359.97438 * 17 16 14 46 46 H 0.96995 * 120.00232 * 180.02562 * 21 20 18 47 47 H 1.09003 * 110.40439 * 338.36933 * 26 9 7 48 48 H 1.09003 * 110.40647 * 100.67781 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.1701 1.3951 0.8410 6 6 4.3172 1.3918 -1.3082 7 6 4.0819 3.4030 0.1232 8 8 3.3177 4.2413 -0.3057 9 7 5.2350 3.7797 0.7105 10 6 5.6967 5.1558 1.0066 11 6 6.3657 5.0468 2.3983 12 1 7.2407 5.6948 2.4489 13 6 5.3706 5.4113 3.5019 14 6 6.7859 3.5674 2.5222 15 6 6.0825 2.9103 3.7115 16 6 8.3041 3.4569 2.6760 17 7 8.6889 2.0439 2.7198 18 6 10.0067 1.6971 2.8547 19 1 10.7624 2.4652 2.9284 20 6 10.3714 0.3584 2.8956 21 7 9.4504 -0.5776 2.8053 22 14 12.1691 -0.1147 3.0790 23 1 12.9989 1.1143 3.1585 24 1 12.3469 -0.9137 4.3180 25 1 12.5910 -0.9211 1.9053 26 6 6.3312 2.9119 1.2005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8032 2.2371 -0.8900 31 1 1.8031 2.2372 0.8899 32 1 4.1563 0.3146 -1.3525 33 1 3.8189 1.8686 -2.1523 34 1 5.3860 1.6016 -1.3514 35 1 6.4195 5.4833 0.2595 36 1 4.8499 5.8411 1.0436 37 1 5.8343 5.2539 4.4757 38 1 5.0836 6.4580 3.4011 39 1 4.4850 4.7817 3.4150 40 1 6.3493 1.8542 3.7531 41 1 6.3939 3.4002 4.6339 42 1 5.0032 3.0080 3.5945 43 1 8.7913 3.9400 1.8290 44 1 8.6123 3.9462 3.6001 45 1 8.0101 1.3542 2.6540 46 1 9.7052 -1.5131 2.8343 47 1 5.9636 1.9022 1.3837 48 1 7.1507 2.8926 0.4821 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180885599.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:03 Heat of formation + Delta-G solvation = -50.586995 kcal Electronic energy + Delta-G solvation = -25424.327688 eV Core-core repulsion = 22025.688443 eV Total energy + Delta-G solvation = -3398.639245 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62481 -39.74602 -36.42356 -35.66104 -34.46150 -33.08678 -31.18033 -29.95357 -28.76358 -28.20662 -27.16597 -26.77672 -25.19075 -23.96769 -22.14381 -20.26360 -19.70735 -19.06537 -18.45041 -17.22483 -16.95780 -16.69416 -16.47737 -15.96810 -15.65875 -15.36835 -15.17908 -14.83569 -14.75235 -14.68413 -14.49003 -14.27516 -13.99577 -13.80317 -13.55358 -13.29698 -13.08467 -13.04518 -13.02051 -12.85235 -12.63254 -12.48963 -12.41421 -12.37539 -12.24876 -12.02003 -11.93408 -11.50011 -11.35663 -11.21695 -11.04782 -10.90589 -10.76422 -9.78094 -8.91557 -8.69877 -7.89460 -5.16346 0.59908 1.48147 1.50494 1.51531 1.60477 1.61172 1.93468 2.60044 3.32501 3.43755 3.48699 3.50890 3.69918 3.76927 3.84275 4.15159 4.18380 4.26475 4.30721 4.32316 4.35322 4.35587 4.42265 4.54966 4.57827 4.61334 4.72785 4.76687 4.81707 4.85031 4.87345 4.88165 4.91959 4.99699 5.07179 5.08292 5.15618 5.17441 5.25541 5.37453 5.45028 5.56574 5.59212 6.33101 6.45162 7.00817 7.40926 8.16793 8.40280 9.33869 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.011885 B = 0.003863 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.257121 B = 7247.236520 C = 8770.568910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.290 6.290 3 C -0.054 4.054 4 C -0.089 4.089 5 H 0.099 0.901 6 C -0.135 4.135 7 C 0.545 3.455 8 O -0.577 6.577 9 N -0.614 5.614 10 C 0.108 3.892 11 C -0.088 4.088 12 H 0.101 0.899 13 C -0.137 4.137 14 C -0.068 4.068 15 C -0.125 4.125 16 C 0.168 3.832 17 N -0.739 5.739 18 C -0.238 4.238 19 H 0.074 0.926 20 C -0.071 4.071 21 N -0.965 5.965 22 Si 0.965 3.035 23 H -0.268 1.268 24 H -0.296 1.296 25 H -0.296 1.296 26 C 0.119 3.881 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.038 0.962 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.024 0.976 44 H 0.025 0.975 45 H 0.377 0.623 46 H 0.249 0.751 47 H 0.075 0.925 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.800 8.480 -3.918 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.064 6.064 3 C -0.203 4.203 4 C -0.111 4.111 5 H 0.117 0.883 6 C -0.193 4.193 7 C 0.334 3.666 8 O -0.457 6.457 9 N -0.346 5.346 10 C -0.015 4.015 11 C -0.107 4.107 12 H 0.119 0.881 13 C -0.194 4.194 14 C -0.069 4.069 15 C -0.182 4.182 16 C 0.041 3.959 17 N -0.383 5.383 18 C -0.371 4.371 19 H 0.092 0.908 20 C -0.263 4.263 21 N -0.616 5.616 22 Si 0.795 3.205 23 H -0.192 1.192 24 H -0.224 1.224 25 H -0.224 1.224 26 C -0.004 4.004 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.133 0.867 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.042 0.958 44 H 0.043 0.957 45 H 0.210 0.790 46 H 0.058 0.942 47 H 0.094 0.906 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.461 8.070 -4.175 17.933 hybrid contribution 0.179 0.072 0.120 0.227 sum -15.283 8.142 -4.055 17.785 Atomic orbital electron populations 1.23464 0.91247 1.07624 1.05852 1.87088 1.10633 1.10559 1.98141 1.23088 0.96986 0.94402 1.05824 1.20980 0.95434 0.92216 1.02456 0.88336 1.21720 1.00788 1.02433 0.94383 1.20286 0.79258 0.90964 0.76108 1.90653 1.50307 1.54689 1.50101 1.49024 1.17570 1.09571 1.58392 1.22602 0.99047 0.83449 0.96356 1.22181 0.99472 0.94734 0.94347 0.88076 1.21852 0.98193 1.01345 0.97979 1.21572 0.94938 0.95761 0.94624 1.21792 0.99501 0.99740 0.97150 1.20854 0.91525 0.85563 0.97932 1.42540 1.04946 1.02404 1.88365 1.19617 0.85960 0.91399 1.40075 0.90805 1.25420 1.00929 0.95976 1.04000 1.69792 1.33072 0.99334 1.59452 0.85197 0.80933 0.77870 0.76504 1.19226 1.22382 1.22362 1.22469 0.88460 0.94331 0.95128 0.89706 0.89465 0.86701 0.89162 0.89969 0.90014 0.91526 0.92241 0.90323 0.89913 0.91602 0.91426 0.93364 0.94298 0.91796 0.91959 0.95768 0.95678 0.79029 0.94162 0.90638 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 10.76 113.37 1.22 -0.38 16 2 S -0.29 -6.30 21.29 -56.49 -1.20 -7.50 16 3 C -0.05 -1.23 4.88 71.98 0.35 -0.88 16 4 C -0.09 -2.22 2.28 -11.54 -0.03 -2.24 16 5 H 0.10 2.56 6.68 -2.38 -0.02 2.55 16 6 C -0.14 -3.21 8.91 71.98 0.64 -2.57 16 7 C 0.55 15.53 6.98 87.66 0.61 16.15 16 8 O -0.58 -19.26 16.56 -3.02 -0.05 -19.31 16 9 N -0.61 -16.48 3.31 -807.15 -2.67 -19.15 16 10 C 0.11 2.52 6.61 86.67 0.57 3.09 16 11 C -0.09 -1.95 3.31 -9.74 -0.03 -1.98 16 12 H 0.10 2.04 7.71 -2.38 -0.02 2.02 16 13 C -0.14 -2.69 7.95 71.98 0.57 -2.11 16 14 C -0.07 -1.91 0.73 -51.28 -0.04 -1.95 16 15 C -0.12 -3.58 7.08 71.98 0.51 -3.07 16 16 C 0.17 6.00 4.85 86.37 0.42 6.42 16 17 N -0.74 -34.59 5.12 -343.44 -1.76 -36.35 16 18 C -0.24 -12.67 9.99 84.03 0.84 -11.83 16 19 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 20 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 21 N -0.97 -57.07 13.06 21.65 0.28 -56.79 16 22 Si 0.96 45.07 29.55 68.60 2.03 47.09 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 25 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 26 C 0.12 3.46 5.43 86.53 0.47 3.93 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 2.05 8.02 -2.39 -0.02 2.03 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 1.90 7.33 -2.39 -0.02 1.88 16 33 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 1.93 7.66 -2.39 -0.02 1.91 16 37 H 0.07 1.27 6.89 -2.39 -0.02 1.26 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.05 1.04 6.73 -2.39 -0.02 1.02 16 40 H 0.04 1.33 6.99 -2.39 -0.02 1.32 16 41 H 0.06 1.75 6.99 -2.39 -0.02 1.73 16 42 H 0.06 1.61 6.62 -2.39 -0.02 1.59 16 43 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 45 H 0.38 18.70 6.27 -92.71 -0.58 18.12 16 46 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 47 H 0.08 2.32 6.27 -2.39 -0.01 2.31 16 48 H 0.07 2.24 7.87 -2.39 -0.02 2.22 16 Total: -1.00 -63.91 385.05 3.55 -60.36 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: 0.35 Total: 32.53 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 6.58 Total: -0.89 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -4.15 Total: -112.28 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.05 Total: -19.31 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: -6.30 SS G_CDS: -1.20 Total: -7.50 kcal Total: -63.91 3.55 -60.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180885599.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.771 kcal (2) G-P(sol) polarization free energy of solvation -63.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds