Wall clock time and date at job start Tue Mar 31 2020 10:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 N 1.46898 * 109.47006 * 240.00253 * 2 1 3 5 5 C 1.46900 * 111.00182 * 204.99462 * 4 2 1 6 6 C 1.52991 * 109.47562 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.46436 * 54.97123 * 6 5 4 8 8 C 1.53049 * 109.45910 * 295.00477 * 6 5 4 9 9 C 1.53191 * 109.31189 * 178.61571 * 8 6 5 10 10 N 1.46923 * 108.78002 * 54.63327 * 9 8 6 11 11 C 1.34771 * 120.63478 * 126.36822 * 10 9 8 12 12 O 1.21283 * 120.00430 * 180.02562 * 11 10 9 13 13 C 1.50707 * 119.99822 * 0.02562 * 11 10 9 14 14 S 1.80998 * 109.47217 * 179.97438 * 13 11 10 15 15 C 1.76193 * 100.00149 * 180.02562 * 14 13 11 16 16 H 1.08008 * 119.99877 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00406 * 179.97438 * 15 14 13 18 18 N 1.31624 * 120.00528 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99667 * 0.02562 * 17 15 14 20 20 H 1.48491 * 109.47040 * 89.99706 * 19 17 15 21 21 H 1.48494 * 109.47166 * 210.00072 * 19 17 15 22 22 H 1.48503 * 109.47232 * 329.99680 * 19 17 15 23 23 C 1.46931 * 118.73780 * 306.39365 * 10 9 8 24 24 C 1.53040 * 109.46304 * 174.93548 * 6 5 4 25 25 H 1.09004 * 109.49872 * 61.43276 * 24 6 5 26 26 C 1.53001 * 109.49614 * 301.33525 * 24 6 5 27 27 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 30 30 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 31 31 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 32 32 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.00896 * 111.00315 * 328.95699 * 4 2 1 35 35 H 1.09002 * 109.47349 * 300.00525 * 5 4 2 36 36 H 1.09001 * 109.46826 * 59.99872 * 5 4 2 37 37 H 1.09003 * 109.49066 * 298.56307 * 8 6 5 38 38 H 1.08996 * 109.49557 * 58.65848 * 8 6 5 39 39 H 1.09005 * 109.58397 * 174.42050 * 9 8 6 40 40 H 1.09000 * 109.58245 * 294.69924 * 9 8 6 41 41 H 1.08995 * 109.47142 * 299.99953 * 13 11 10 42 42 H 1.08999 * 109.46733 * 59.99738 * 13 11 10 43 43 H 0.96991 * 120.00479 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.58672 * 173.39465 * 23 10 9 45 45 H 1.09004 * 109.58433 * 293.67726 * 23 10 9 46 46 H 1.09004 * 109.47003 * 60.00186 * 26 24 6 47 47 H 1.08994 * 109.47015 * 179.97438 * 26 24 6 48 48 H 1.08999 * 109.47279 * 299.99941 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 3.3671 -1.2353 -0.9808 6 6 3.8423 -1.9469 -2.2491 7 1 3.7812 -1.2617 -3.0946 8 6 2.9532 -3.1641 -2.5143 9 6 3.4102 -3.8541 -3.8034 10 7 4.8417 -4.1653 -3.6914 11 6 5.2900 -5.4195 -3.8977 12 8 6.4741 -5.6637 -3.8018 13 6 4.3199 -6.5184 -4.2474 14 16 5.2211 -8.0735 -4.4611 15 6 3.8834 -9.1512 -4.8527 16 1 2.8752 -8.7663 -4.8976 17 6 4.1251 -10.4946 -5.1044 18 7 3.1257 -11.2998 -5.3964 19 14 5.8689 -11.1601 -5.0273 20 1 6.1619 -11.6217 -3.6467 21 1 6.0060 -12.2994 -5.9698 22 1 6.8250 -10.0882 -5.4043 23 6 5.7753 -3.0834 -3.3497 24 6 5.2919 -2.4021 -2.0657 25 1 5.3497 -3.1067 -1.2360 26 6 6.1745 -1.1883 -1.7682 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.3794 -1.4181 -1.4848 35 1 4.0524 -0.4218 -0.7426 36 1 3.3432 -1.9443 -0.1532 37 1 3.0332 -3.8615 -1.6804 38 1 1.9176 -2.8417 -2.6215 39 1 2.8458 -4.7759 -3.9444 40 1 3.2437 -3.1903 -4.6518 41 1 3.5904 -6.6281 -3.4450 42 1 3.8050 -6.2669 -5.1746 43 1 3.2947 -12.2385 -5.5727 44 1 6.7714 -3.4967 -3.1914 45 1 5.8060 -2.3571 -4.1620 46 1 5.8284 -0.7022 -0.8560 47 1 7.2067 -1.5130 -1.6372 48 1 6.1171 -0.4849 -2.5989 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183948606.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:54 Heat of formation + Delta-G solvation = -56.010179 kcal Electronic energy + Delta-G solvation = -24401.211323 eV Core-core repulsion = 21002.336911 eV Total energy + Delta-G solvation = -3398.874412 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.26713 -38.44189 -36.94253 -34.30927 -32.78229 -32.43862 -30.61350 -29.68111 -27.68199 -26.89972 -26.13787 -25.54795 -23.08880 -22.19407 -20.90345 -20.22464 -19.13988 -17.64774 -16.80598 -16.31181 -15.99220 -15.65331 -15.22223 -14.97016 -14.93837 -14.57185 -14.09635 -13.98787 -13.82756 -13.50513 -13.30568 -12.95742 -12.84151 -12.75890 -12.48335 -12.33952 -12.21360 -12.07627 -12.03923 -11.94364 -11.56935 -11.28683 -11.25245 -11.19499 -11.00870 -10.88050 -10.59702 -10.56789 -10.43114 -9.85360 -9.43507 -9.00286 -8.77329 -8.55032 -8.48276 -6.91610 -6.28864 -4.00424 2.72956 2.95607 3.21498 3.33375 3.50962 3.59652 3.75675 4.33176 4.41751 4.45310 4.50001 4.58578 4.70419 4.72889 4.78567 4.95852 5.03525 5.10244 5.12146 5.14631 5.23837 5.28032 5.28810 5.30872 5.40393 5.46595 5.46804 5.52885 5.54920 5.64555 5.67938 5.68674 5.73097 5.77065 5.80504 5.88411 5.93638 5.97446 5.99289 6.01666 6.23494 6.60417 6.72714 7.05695 7.50368 7.94183 8.41345 8.46688 9.17455 10.80358 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.022056 B = 0.002658 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.218669 B =10531.580316 C =11496.881354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.077 3.923 3 C -0.139 4.139 4 N -0.687 5.687 5 C 0.062 3.938 6 C -0.079 4.079 7 H 0.082 0.918 8 C -0.132 4.132 9 C 0.108 3.892 10 N -0.618 5.618 11 C 0.533 3.467 12 O -0.521 6.521 13 C -0.121 4.121 14 S -0.144 6.144 15 C -0.520 4.520 16 H 0.088 0.912 17 C 0.095 3.905 18 N -0.881 5.881 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C 0.119 3.881 24 C -0.100 4.100 25 H 0.074 0.926 26 C -0.146 4.146 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.341 0.659 35 H 0.077 0.923 36 H 0.028 0.972 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.092 0.908 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.952 25.819 9.829 27.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.033 4.033 3 C -0.197 4.197 4 N -0.320 5.320 5 C -0.067 4.067 6 C -0.098 4.098 7 H 0.100 0.900 8 C -0.171 4.171 9 C -0.015 4.015 10 N -0.353 5.353 11 C 0.321 3.679 12 O -0.396 6.396 13 C -0.271 4.271 14 S 0.083 5.917 15 C -0.668 4.668 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.517 5.517 19 Si 0.681 3.319 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 C -0.003 4.003 24 C -0.120 4.120 25 H 0.092 0.908 26 C -0.204 4.204 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.160 0.840 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.110 0.890 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.041 25.834 9.620 27.586 hybrid contribution -1.164 -1.014 0.497 1.622 sum -2.206 24.820 10.117 26.893 Atomic orbital electron populations 1.21981 0.94695 1.02010 1.02599 1.21502 0.94783 0.95588 0.91418 1.21784 1.00969 0.95341 1.01604 1.60585 1.03924 1.33293 1.34167 1.22133 0.90625 0.97697 0.96288 1.21185 0.93980 0.96327 0.98342 0.89953 1.22009 0.99448 0.97249 0.98375 1.21711 0.81075 1.01263 0.97464 1.48058 1.07787 1.08290 1.71174 1.20294 0.89274 0.82470 0.75857 1.90683 1.17131 1.81614 1.50124 1.23305 1.01325 0.97661 1.04836 1.84794 1.14830 1.00074 1.92022 1.22307 0.94119 0.95496 1.54864 0.89417 1.24711 0.97660 0.95707 0.93242 1.69931 1.31144 1.05296 1.45349 0.86734 0.85248 0.80663 0.79214 1.19233 1.19946 1.15910 1.21570 0.94444 0.88741 0.95589 1.21493 0.94531 0.97500 0.98469 0.90780 1.21823 0.99544 0.97322 1.01710 0.91673 0.92719 0.91981 0.94078 0.91990 0.92791 0.92921 0.83967 0.90499 0.95329 0.91498 0.90592 0.89199 0.91270 0.88647 0.88543 0.91947 0.88952 0.91777 0.92247 0.92360 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 9.18 37.16 0.34 -0.55 16 2 C 0.08 0.52 3.22 -67.71 -0.22 0.30 16 3 C -0.14 -0.89 9.41 37.16 0.35 -0.54 16 4 N -0.69 -5.00 6.31 -106.73 -0.67 -5.68 16 5 C 0.06 0.47 4.70 -3.83 -0.02 0.45 16 6 C -0.08 -0.64 1.90 -90.58 -0.17 -0.82 16 7 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 8 C -0.13 -1.14 5.16 -26.61 -0.14 -1.28 16 9 C 0.11 1.14 6.34 -3.71 -0.02 1.12 16 10 N -0.62 -8.45 2.97 -172.76 -0.51 -8.97 16 11 C 0.53 9.81 7.72 -10.98 -0.08 9.72 16 12 O -0.52 -11.47 15.28 5.55 0.08 -11.38 16 13 C -0.12 -2.38 4.50 36.01 0.16 -2.22 16 14 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 15 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 16 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 17 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 18 N -0.88 -26.60 13.97 55.49 0.78 -25.83 16 19 Si 0.86 21.90 27.74 -169.99 -4.72 17.18 16 20 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 23 C 0.12 1.40 5.72 -3.71 -0.02 1.38 16 24 C -0.10 -0.93 2.41 -90.50 -0.22 -1.14 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 C -0.15 -1.11 8.82 37.16 0.33 -0.78 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.31 8.12 -51.93 -0.42 -0.11 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.04 0.30 7.80 -51.93 -0.40 -0.11 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.35 7.45 -51.93 -0.39 -0.03 16 34 H 0.34 2.35 6.57 -39.29 -0.26 2.09 16 35 H 0.08 0.58 5.43 -51.93 -0.28 0.30 16 36 H 0.03 0.24 8.06 -51.93 -0.42 -0.18 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.54 6.62 -51.93 -0.34 0.19 16 39 H 0.09 0.99 5.93 -51.93 -0.31 0.68 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 1.75 7.69 -51.92 -0.40 1.35 16 42 H 0.10 1.78 7.94 -51.92 -0.41 1.36 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.09 1.27 7.00 -51.93 -0.36 0.90 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.40 6.29 -51.93 -0.33 0.08 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 381.22 15.07 5.74 5.74 Total: -1.00 -32.86 381.22 -9.34 -42.21 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -8.55 Total: -1.24 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 0.50 Total: -6.37 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: -0.41 Total: -40.47 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.38 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.72 Total: 17.18 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.86 -9.34 -42.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183948606.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.805 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds