Wall clock time and date at job start Tue Mar 31 2020 10:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 N 1.46898 * 109.47006 * 240.00253 * 2 1 3 5 5 C 1.46900 * 111.00182 * 204.99462 * 4 2 1 6 6 C 1.52991 * 109.47562 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.46436 * 54.97123 * 6 5 4 8 8 C 1.53049 * 109.45910 * 295.00477 * 6 5 4 9 9 C 1.53191 * 109.31189 * 178.61571 * 8 6 5 10 10 N 1.46923 * 108.78002 * 54.63327 * 9 8 6 11 11 C 1.34771 * 120.63478 * 126.36822 * 10 9 8 12 12 O 1.21283 * 120.00430 * 180.02562 * 11 10 9 13 13 C 1.50707 * 119.99822 * 0.02562 * 11 10 9 14 14 S 1.80998 * 109.47217 * 179.97438 * 13 11 10 15 15 C 1.76193 * 100.00149 * 180.02562 * 14 13 11 16 16 H 1.08008 * 119.99877 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00406 * 179.97438 * 15 14 13 18 18 N 1.31624 * 120.00528 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99667 * 0.02562 * 17 15 14 20 20 H 1.48491 * 109.47040 * 89.99706 * 19 17 15 21 21 H 1.48494 * 109.47166 * 210.00072 * 19 17 15 22 22 H 1.48503 * 109.47232 * 329.99680 * 19 17 15 23 23 C 1.46931 * 118.73780 * 306.39365 * 10 9 8 24 24 C 1.53040 * 109.46304 * 174.93548 * 6 5 4 25 25 H 1.09004 * 109.49872 * 61.43276 * 24 6 5 26 26 C 1.53001 * 109.49614 * 301.33525 * 24 6 5 27 27 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 30 30 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 31 31 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 32 32 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.00896 * 111.00315 * 328.95699 * 4 2 1 35 35 H 1.09002 * 109.47349 * 300.00525 * 5 4 2 36 36 H 1.09001 * 109.46826 * 59.99872 * 5 4 2 37 37 H 1.09003 * 109.49066 * 298.56307 * 8 6 5 38 38 H 1.08996 * 109.49557 * 58.65848 * 8 6 5 39 39 H 1.09005 * 109.58397 * 174.42050 * 9 8 6 40 40 H 1.09000 * 109.58245 * 294.69924 * 9 8 6 41 41 H 1.08995 * 109.47142 * 299.99953 * 13 11 10 42 42 H 1.08999 * 109.46733 * 59.99738 * 13 11 10 43 43 H 0.96991 * 120.00479 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.58672 * 173.39465 * 23 10 9 45 45 H 1.09004 * 109.58433 * 293.67726 * 23 10 9 46 46 H 1.09004 * 109.47003 * 60.00186 * 26 24 6 47 47 H 1.08994 * 109.47015 * 179.97438 * 26 24 6 48 48 H 1.08999 * 109.47279 * 299.99941 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 3.3671 -1.2353 -0.9808 6 6 3.8423 -1.9469 -2.2491 7 1 3.7812 -1.2617 -3.0946 8 6 2.9532 -3.1641 -2.5143 9 6 3.4102 -3.8541 -3.8034 10 7 4.8417 -4.1653 -3.6914 11 6 5.2900 -5.4195 -3.8977 12 8 6.4741 -5.6637 -3.8018 13 6 4.3199 -6.5184 -4.2474 14 16 5.2211 -8.0735 -4.4611 15 6 3.8834 -9.1512 -4.8527 16 1 2.8752 -8.7663 -4.8976 17 6 4.1251 -10.4946 -5.1044 18 7 3.1257 -11.2998 -5.3964 19 14 5.8689 -11.1601 -5.0273 20 1 6.1619 -11.6217 -3.6467 21 1 6.0060 -12.2994 -5.9698 22 1 6.8250 -10.0882 -5.4043 23 6 5.7753 -3.0834 -3.3497 24 6 5.2919 -2.4021 -2.0657 25 1 5.3497 -3.1067 -1.2360 26 6 6.1745 -1.1883 -1.7682 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.3794 -1.4181 -1.4848 35 1 4.0524 -0.4218 -0.7426 36 1 3.3432 -1.9443 -0.1532 37 1 3.0332 -3.8615 -1.6804 38 1 1.9176 -2.8417 -2.6215 39 1 2.8458 -4.7759 -3.9444 40 1 3.2437 -3.1903 -4.6518 41 1 3.5904 -6.6281 -3.4450 42 1 3.8050 -6.2669 -5.1746 43 1 3.2947 -12.2385 -5.5727 44 1 6.7714 -3.4967 -3.1914 45 1 5.8060 -2.3571 -4.1620 46 1 5.8284 -0.7022 -0.8560 47 1 7.2067 -1.5130 -1.6372 48 1 6.1171 -0.4849 -2.5989 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183948606.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:53 Heat of formation + Delta-G solvation = -76.994986 kcal Electronic energy + Delta-G solvation = -24402.121293 eV Core-core repulsion = 21002.336911 eV Total energy + Delta-G solvation = -3399.784381 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.36767 -39.44136 -37.72683 -35.31886 -34.68188 -33.52368 -31.44373 -31.02180 -28.17432 -27.92038 -27.60072 -26.97540 -23.98782 -22.95092 -21.46730 -21.15974 -20.37514 -19.50949 -18.17985 -17.22863 -17.00937 -16.95408 -16.61345 -16.28306 -15.76463 -15.59085 -15.22518 -15.06153 -14.91347 -14.68534 -14.52765 -14.22902 -13.81654 -13.57599 -13.36144 -13.33667 -13.06828 -13.04574 -12.99055 -12.89487 -12.80440 -12.64541 -12.51976 -12.12858 -11.94991 -11.87519 -11.80141 -11.59372 -11.36492 -11.19387 -11.18193 -10.87877 -10.52651 -9.68816 -9.33973 -9.01738 -8.52515 -6.23618 0.96370 1.30197 1.45166 1.50641 1.53480 2.06939 2.24152 2.67263 2.85617 3.17832 3.49884 3.70891 3.79317 3.88849 3.98364 4.07680 4.16235 4.19675 4.28458 4.35405 4.41312 4.45923 4.50327 4.52588 4.64736 4.69385 4.79160 4.82659 4.84309 4.88292 4.95181 4.98960 5.00706 5.03658 5.07299 5.16722 5.22534 5.32007 5.34466 5.43988 5.50419 5.58217 5.69934 6.10247 6.16308 6.25685 6.52082 6.92671 7.07541 8.59824 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.022056 B = 0.002658 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.218669 B =10531.580316 C =11496.881354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.074 3.926 3 C -0.137 4.137 4 N -0.688 5.688 5 C 0.068 3.932 6 C -0.071 4.071 7 H 0.088 0.912 8 C -0.126 4.126 9 C 0.100 3.900 10 N -0.604 5.604 11 C 0.532 3.468 12 O -0.565 6.565 13 C -0.105 4.105 14 S -0.178 6.178 15 C -0.527 4.527 16 H 0.063 0.937 17 C 0.046 3.954 18 N -0.916 5.916 19 Si 0.913 3.087 20 H -0.263 1.263 21 H -0.258 1.258 22 H -0.238 1.238 23 C 0.116 3.884 24 C -0.092 4.092 25 H 0.057 0.943 26 C -0.142 4.142 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.343 0.657 35 H 0.080 0.920 36 H 0.021 0.979 37 H 0.054 0.946 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.277 0.723 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.069 0.931 47 H 0.053 0.947 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.210 27.950 10.230 29.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.035 4.035 3 C -0.194 4.194 4 N -0.322 5.322 5 C -0.061 4.061 6 C -0.090 4.090 7 H 0.107 0.893 8 C -0.165 4.165 9 C -0.022 4.022 10 N -0.338 5.338 11 C 0.320 3.680 12 O -0.444 6.444 13 C -0.256 4.256 14 S 0.049 5.951 15 C -0.675 4.675 16 H 0.081 0.919 17 C -0.159 4.159 18 N -0.554 5.554 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.182 1.182 22 H -0.162 1.162 23 C -0.006 4.006 24 C -0.112 4.112 25 H 0.076 0.924 26 C -0.199 4.199 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.163 0.837 35 H 0.098 0.902 36 H 0.039 0.961 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.102 0.898 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.342 28.009 10.027 29.779 hybrid contribution -1.195 -1.508 0.402 1.966 sum -2.537 26.501 10.429 28.592 Atomic orbital electron populations 1.21951 0.93969 1.02149 1.02882 1.21547 0.95398 0.95613 0.90961 1.21764 1.00710 0.95140 1.01836 1.60604 1.03788 1.33305 1.34471 1.22033 0.91005 0.97490 0.95533 1.21104 0.92840 0.96109 0.98900 0.89322 1.21976 1.00763 0.96986 0.96728 1.22015 0.78837 1.01865 0.99477 1.48092 1.09636 1.07020 1.69009 1.20033 0.88239 0.83623 0.76131 1.90666 1.18571 1.82539 1.52669 1.23269 1.01168 0.94922 1.06194 1.84730 1.15157 1.03148 1.92105 1.22431 0.94078 0.96421 1.54533 0.91879 1.25547 1.01341 0.96080 0.92973 1.70004 1.33084 1.05952 1.46329 0.85879 0.80618 0.80271 0.79685 1.18731 1.18222 1.16193 1.21761 0.93036 0.88216 0.97581 1.21410 0.95798 0.97655 0.96356 0.92447 1.21792 0.98916 0.96599 1.02630 0.91820 0.92653 0.91279 0.94570 0.92429 0.91909 0.93273 0.83708 0.90172 0.96112 0.92693 0.88398 0.89589 0.89012 0.87269 0.87061 0.91335 0.91252 0.89781 0.91176 0.92753 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.18 71.98 0.66 -0.80 16 2 C 0.07 0.85 3.22 44.92 0.14 1.00 16 3 C -0.14 -1.48 9.41 71.98 0.68 -0.80 16 4 N -0.69 -8.39 6.31 -491.59 -3.10 -11.49 16 5 C 0.07 0.88 4.70 86.30 0.41 1.29 16 6 C -0.07 -0.97 1.90 -10.77 -0.02 -0.99 16 7 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 8 C -0.13 -1.87 5.16 30.67 0.16 -1.71 16 9 C 0.10 1.87 6.34 86.36 0.55 2.42 16 10 N -0.60 -15.73 2.97 -818.88 -2.43 -18.16 16 11 C 0.53 19.35 7.72 87.66 0.68 20.03 16 12 O -0.57 -25.15 15.28 -3.04 -0.05 -25.20 16 13 C -0.10 -4.08 4.50 71.24 0.32 -3.76 16 14 S -0.18 -9.17 18.55 -56.49 -1.05 -10.21 16 15 C -0.53 -30.86 10.04 67.95 0.68 -30.18 16 16 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 17 C 0.05 2.72 5.50 84.86 0.47 3.19 16 18 N -0.92 -55.84 13.97 21.65 0.30 -55.54 16 19 Si 0.91 45.36 27.74 68.60 1.90 47.26 16 20 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 22 H -0.24 -11.85 6.74 99.48 0.67 -11.18 16 23 C 0.12 2.56 5.72 86.36 0.49 3.06 16 24 C -0.09 -1.55 2.41 -10.72 -0.03 -1.58 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 C -0.14 -1.85 8.82 71.98 0.63 -1.21 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.52 8.12 -2.39 -0.02 0.50 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.04 0.46 7.80 -2.39 -0.02 0.44 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.05 0.56 7.45 -2.39 -0.02 0.54 16 34 H 0.34 3.85 6.57 -89.70 -0.59 3.26 16 35 H 0.08 1.01 5.43 -2.39 -0.01 0.99 16 36 H 0.02 0.31 8.06 -2.39 -0.02 0.29 16 37 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.10 1.08 6.62 -2.39 -0.02 1.06 16 39 H 0.09 1.71 5.93 -2.38 -0.01 1.69 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.11 3.94 7.69 -2.40 -0.02 3.92 16 42 H 0.11 4.00 7.94 -2.40 -0.02 3.98 16 43 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.07 1.90 7.00 -2.39 -0.02 1.88 16 45 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 46 H 0.07 0.79 6.29 -2.39 -0.02 0.77 16 47 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -71.49 381.22 1.70 -69.79 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.30 Total: 13.61 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 5.82 Total: -10.05 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -5.23 Total: -85.19 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.05 Total: -25.20 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.90 Total: 47.26 kcal Atomic # 16 Polarization: -9.17 SS G_CDS: -1.05 Total: -10.21 kcal Total: -71.49 1.70 -69.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183948606.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.207 kcal (2) G-P(sol) polarization free energy of solvation -71.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds