Wall clock time and date at job start Tue Mar 31 2020 10:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46913 * 2 1 4 4 N 1.46506 * 109.47021 * 119.98976 * 2 1 3 5 5 C 1.36936 * 120.00417 * 275.00150 * 4 2 1 6 6 H 1.07995 * 119.99840 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99624 * 180.02562 * 5 4 2 8 8 N 1.31614 * 120.00302 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47464 * 90.00026 * 9 7 5 11 11 H 1.48502 * 109.47009 * 209.99986 * 9 7 5 12 12 H 1.48506 * 109.47103 * 329.99834 * 9 7 5 13 13 C 1.50694 * 109.47346 * 239.99651 * 2 1 3 14 14 C 1.38230 * 120.00259 * 100.00035 * 13 2 1 15 15 C 1.38240 * 120.00253 * 180.02562 * 14 13 2 16 16 C 1.38232 * 119.99631 * 359.95030 * 15 14 13 17 17 C 1.50703 * 119.99860 * 180.02562 * 16 15 14 18 18 N 1.46505 * 109.47064 * 89.99969 * 17 16 15 19 19 C 1.34771 * 119.99622 * 179.97438 * 18 17 16 20 20 O 1.21606 * 120.00433 * 0.02562 * 19 18 17 21 21 C 1.47108 * 119.99694 * 180.02562 * 19 18 17 22 22 C 1.32992 * 120.00080 * 180.02562 * 21 19 18 23 23 C 1.51400 * 136.31551 * 359.62629 * 22 21 19 24 24 C 1.53372 * 87.52186 * 206.06072 * 23 22 21 25 25 C 1.51408 * 136.31834 * 180.02562 * 22 21 19 26 26 C 1.38234 * 120.00312 * 0.27932 * 16 15 14 27 27 C 1.38239 * 119.99965 * 359.53631 * 26 16 15 28 28 H 1.09004 * 109.47120 * 300.00446 * 1 2 3 29 29 H 1.09000 * 109.46849 * 60.00560 * 1 2 3 30 30 H 1.09000 * 109.46566 * 180.02562 * 1 2 3 31 31 H 0.97006 * 119.99111 * 95.00527 * 4 2 1 32 32 H 0.97000 * 119.99969 * 179.97438 * 8 7 5 33 33 H 1.07999 * 120.00198 * 359.97438 * 14 13 2 34 34 H 1.07996 * 119.99763 * 179.97438 * 15 14 13 35 35 H 1.09002 * 109.47152 * 330.00052 * 17 16 15 36 36 H 1.09001 * 109.46980 * 210.00152 * 17 16 15 37 37 H 0.96996 * 119.99606 * 0.02562 * 18 17 16 38 38 H 1.07998 * 120.00056 * 0.02562 * 21 19 18 39 39 H 1.09001 * 113.56505 * 320.64307 * 23 22 21 40 40 H 1.09005 * 113.56001 * 91.37466 * 23 22 21 41 41 H 1.09000 * 113.96935 * 220.29462 * 24 23 22 42 42 H 1.09000 * 113.60192 * 88.79101 * 24 23 22 43 43 H 1.09005 * 113.55414 * 268.62718 * 25 22 21 44 44 H 1.08997 * 113.56015 * 39.35079 * 25 22 21 45 45 H 1.07998 * 120.00015 * 179.72855 * 26 16 15 46 46 H 1.08001 * 120.00429 * 180.20865 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6904 1.1963 5 6 2.1491 -0.0072 2.3758 6 1 1.8919 1.0406 2.4243 7 6 2.6123 -0.6614 3.5091 8 7 2.9253 -1.9384 3.4501 9 14 2.7901 0.2705 5.1183 10 1 1.5225 0.1783 5.8864 11 1 3.8951 -0.3220 5.9140 12 1 3.0940 1.6960 4.8339 13 6 2.0324 -0.7104 -1.2304 14 6 2.4588 0.0193 -2.3242 15 6 2.9192 -0.6325 -3.4530 16 6 2.9540 -2.0139 -3.4876 17 6 3.4564 -2.7245 -4.7180 18 7 4.9018 -2.9352 -4.6043 19 6 5.5720 -3.5569 -5.5945 20 8 4.9772 -3.9425 -6.5826 21 6 7.0232 -3.7689 -5.4801 22 6 7.6848 -4.3820 -6.4575 23 6 7.3374 -4.9969 -7.7967 24 6 8.5682 -5.8964 -7.6278 25 6 9.1202 -4.7829 -6.7244 26 6 2.5232 -2.7438 -2.3955 27 6 2.0664 -2.0920 -1.2652 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 2.2491 -1.6316 1.1528 32 1 3.2494 -2.3954 4.2420 33 1 2.4316 1.0986 -2.2972 34 1 3.2519 -0.0623 -4.3077 35 1 3.2458 -2.1183 -5.5991 36 1 2.9550 -3.6878 -4.8114 37 1 5.3761 -2.6278 -3.8160 38 1 7.5514 -3.4268 -4.6024 39 1 6.3953 -5.5451 -7.7932 40 1 7.4185 -4.2995 -8.6305 41 1 9.1387 -6.0429 -8.5449 42 1 8.3593 -6.8275 -7.1010 43 1 9.6906 -4.0266 -7.2638 44 1 9.6398 -5.1554 -5.8416 45 1 2.5463 -3.8231 -2.4242 46 1 1.7329 -2.6621 -0.4107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754947074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:13 Heat of formation + Delta-G solvation = 33.183903 kcal Electronic energy + Delta-G solvation = -24400.842344 eV Core-core repulsion = 20870.391726 eV Total energy + Delta-G solvation = -3530.450617 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.08675 -39.31583 -38.45055 -35.94202 -34.45250 -32.39320 -31.35623 -30.70519 -30.03583 -28.32902 -26.18037 -26.01726 -24.00413 -23.37083 -22.55785 -21.64236 -20.85966 -19.74249 -18.61893 -17.46798 -17.17550 -16.39112 -15.87490 -15.63212 -15.43970 -14.85260 -14.74941 -14.67011 -14.28581 -13.98075 -13.46229 -13.37684 -13.12575 -12.91751 -12.79601 -12.50817 -12.28425 -12.25131 -12.03402 -11.94073 -11.64710 -11.34204 -11.16118 -10.92156 -10.86215 -10.84224 -10.62268 -10.31060 -10.02096 -9.88860 -9.69695 -9.51889 -9.08388 -8.99834 -8.64350 -8.32132 -7.02011 -5.80891 -3.09652 1.13892 1.47535 1.68469 3.16562 3.18907 3.40987 3.46229 3.47757 4.00860 4.14055 4.21406 4.41604 4.56076 4.71385 4.76818 4.94643 4.99972 5.19018 5.21700 5.27481 5.31231 5.36511 5.39679 5.47307 5.54195 5.58943 5.68743 5.71956 5.77865 5.87626 5.95606 5.96373 6.01542 6.24743 6.29128 6.32312 6.34383 6.35663 6.49440 6.61330 6.71760 6.77418 6.94154 7.15172 7.27339 7.46202 7.66477 8.15346 8.37445 9.48851 10.04434 10.39752 11.41757 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017523 B = 0.002228 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.487135 B =12563.574501 C =13683.763414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.203 3.797 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.239 4.239 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.282 1.282 13 C -0.054 4.054 14 C -0.121 4.121 15 C -0.102 4.102 16 C -0.130 4.130 17 C 0.168 3.832 18 N -0.721 5.721 19 C 0.549 3.451 20 O -0.548 6.548 21 C -0.199 4.199 22 C -0.063 4.063 23 C -0.106 4.106 24 C -0.143 4.143 25 C -0.109 4.109 26 C -0.099 4.099 27 C -0.106 4.106 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.048 0.952 31 H 0.385 0.615 32 H 0.255 0.745 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.404 0.596 38 H 0.134 0.866 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.119 0.881 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.949 -3.704 -21.244 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.094 3.906 3 H 0.074 0.926 4 N -0.364 5.364 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.738 3.262 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.207 1.207 13 C -0.055 4.055 14 C -0.140 4.140 15 C -0.121 4.121 16 C -0.131 4.131 17 C 0.046 3.954 18 N -0.372 5.372 19 C 0.338 3.662 20 O -0.427 6.427 21 C -0.219 4.219 22 C -0.065 4.065 23 C -0.143 4.143 24 C -0.181 4.181 25 C -0.146 4.146 26 C -0.118 4.118 27 C -0.124 4.124 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.220 0.780 32 H 0.065 0.935 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.239 0.761 38 H 0.151 0.849 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.119 0.881 44 H 0.097 0.903 45 H 0.137 0.863 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.525 -3.859 -21.792 23.375 hybrid contribution 0.392 0.353 1.580 1.665 sum 7.916 -3.506 -20.212 21.988 Atomic orbital electron populations 1.22422 0.98222 1.01178 1.00154 1.19256 0.92156 0.95003 0.84219 0.92617 1.42523 1.78217 1.10715 1.04907 1.19241 1.36630 0.94016 0.87145 0.91067 1.24742 1.02041 0.96021 0.98104 1.69654 1.50765 1.08691 1.28943 0.86185 0.77311 0.78804 0.83852 1.21708 1.21775 1.20745 1.20526 0.95284 0.94057 0.95611 1.21014 1.00058 0.99786 0.93147 1.20922 0.99638 0.93502 0.98035 1.19661 1.03879 0.93858 0.95680 1.20116 0.79960 0.99901 0.95470 1.46044 1.09039 1.60015 1.22071 1.18438 0.87436 0.77659 0.82646 1.90760 1.70176 1.50937 1.30870 1.21623 0.93433 1.05599 1.01276 1.23461 0.97397 0.90365 0.95306 1.22218 0.99382 0.97978 0.94675 1.22733 0.97788 0.97283 1.00249 1.22358 0.93426 0.98364 1.00468 1.21020 0.98403 0.99491 0.92849 1.21089 0.99156 0.94429 0.97722 0.92391 0.94301 0.93309 0.78002 0.93464 0.86137 0.86500 0.90966 0.90913 0.76101 0.84877 0.89521 0.88486 0.90403 0.89706 0.88118 0.90305 0.86345 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.47 37.16 0.35 -2.51 16 2 C 0.20 3.99 3.09 -69.08 -0.21 3.78 16 3 H 0.06 1.10 7.94 -51.93 -0.41 0.69 16 4 N -0.72 -17.67 5.07 -54.55 -0.28 -17.95 16 5 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 9 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C -0.05 -0.92 4.95 -104.63 -0.52 -1.44 16 14 C -0.12 -1.77 9.67 -39.58 -0.38 -2.15 16 15 C -0.10 -1.31 9.70 -39.58 -0.38 -1.69 16 16 C -0.13 -1.66 5.25 -104.62 -0.55 -2.21 16 17 C 0.17 1.96 5.80 -5.19 -0.03 1.93 16 18 N -0.72 -7.98 5.54 -62.67 -0.35 -8.32 16 19 C 0.55 6.75 7.76 -12.66 -0.10 6.65 16 20 O -0.55 -8.37 15.15 5.27 0.08 -8.29 16 21 C -0.20 -1.95 10.03 -37.80 -0.38 -2.33 16 22 C -0.06 -0.58 6.93 -100.48 -0.70 -1.28 16 23 C -0.11 -0.92 6.99 -27.56 -0.19 -1.11 16 24 C -0.14 -0.92 8.17 -26.21 -0.21 -1.13 16 25 C -0.11 -0.70 7.95 -27.41 -0.22 -0.92 16 26 C -0.10 -1.40 9.70 -39.58 -0.38 -1.78 16 27 C -0.11 -1.76 9.06 -39.58 -0.36 -2.12 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.38 9.93 6.07 -40.82 -0.25 9.68 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.12 1.56 8.04 -52.49 -0.42 1.14 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 36 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 37 H 0.40 3.95 8.45 -40.82 -0.34 3.60 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 39 H 0.09 0.91 7.49 -51.93 -0.39 0.52 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 46 H 0.13 2.30 6.92 -52.49 -0.36 1.93 16 LS Contribution 386.17 15.07 5.82 5.82 Total: -1.00 -31.74 386.17 -10.75 -42.49 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -7.21 Total: 11.59 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -4.51 Total: -15.43 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.10 Total: -53.25 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.08 Total: -8.29 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.74 -10.75 -42.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754947074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.675 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds