Wall clock time and date at job start Tue Mar 31 2020 10:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46913 * 2 1 4 4 N 1.46506 * 109.47021 * 119.98976 * 2 1 3 5 5 C 1.36936 * 120.00417 * 275.00150 * 4 2 1 6 6 H 1.07995 * 119.99840 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99624 * 180.02562 * 5 4 2 8 8 N 1.31614 * 120.00302 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47464 * 90.00026 * 9 7 5 11 11 H 1.48502 * 109.47009 * 209.99986 * 9 7 5 12 12 H 1.48506 * 109.47103 * 329.99834 * 9 7 5 13 13 C 1.50694 * 109.47346 * 239.99651 * 2 1 3 14 14 C 1.38230 * 120.00259 * 100.00035 * 13 2 1 15 15 C 1.38240 * 120.00253 * 180.02562 * 14 13 2 16 16 C 1.38232 * 119.99631 * 359.95030 * 15 14 13 17 17 C 1.50703 * 119.99860 * 180.02562 * 16 15 14 18 18 N 1.46505 * 109.47064 * 89.99969 * 17 16 15 19 19 C 1.34771 * 119.99622 * 179.97438 * 18 17 16 20 20 O 1.21606 * 120.00433 * 0.02562 * 19 18 17 21 21 C 1.47108 * 119.99694 * 180.02562 * 19 18 17 22 22 C 1.32992 * 120.00080 * 180.02562 * 21 19 18 23 23 C 1.51400 * 136.31551 * 359.62629 * 22 21 19 24 24 C 1.53372 * 87.52186 * 206.06072 * 23 22 21 25 25 C 1.51408 * 136.31834 * 180.02562 * 22 21 19 26 26 C 1.38234 * 120.00312 * 0.27932 * 16 15 14 27 27 C 1.38239 * 119.99965 * 359.53631 * 26 16 15 28 28 H 1.09004 * 109.47120 * 300.00446 * 1 2 3 29 29 H 1.09000 * 109.46849 * 60.00560 * 1 2 3 30 30 H 1.09000 * 109.46566 * 180.02562 * 1 2 3 31 31 H 0.97006 * 119.99111 * 95.00527 * 4 2 1 32 32 H 0.97000 * 119.99969 * 179.97438 * 8 7 5 33 33 H 1.07999 * 120.00198 * 359.97438 * 14 13 2 34 34 H 1.07996 * 119.99763 * 179.97438 * 15 14 13 35 35 H 1.09002 * 109.47152 * 330.00052 * 17 16 15 36 36 H 1.09001 * 109.46980 * 210.00152 * 17 16 15 37 37 H 0.96996 * 119.99606 * 0.02562 * 18 17 16 38 38 H 1.07998 * 120.00056 * 0.02562 * 21 19 18 39 39 H 1.09001 * 113.56505 * 320.64307 * 23 22 21 40 40 H 1.09005 * 113.56001 * 91.37466 * 23 22 21 41 41 H 1.09000 * 113.96935 * 220.29462 * 24 23 22 42 42 H 1.09000 * 113.60192 * 88.79101 * 24 23 22 43 43 H 1.09005 * 113.55414 * 268.62718 * 25 22 21 44 44 H 1.08997 * 113.56015 * 39.35079 * 25 22 21 45 45 H 1.07998 * 120.00015 * 179.72855 * 26 16 15 46 46 H 1.08001 * 120.00429 * 180.20865 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6904 1.1963 5 6 2.1491 -0.0072 2.3758 6 1 1.8919 1.0406 2.4243 7 6 2.6123 -0.6614 3.5091 8 7 2.9253 -1.9384 3.4501 9 14 2.7901 0.2705 5.1183 10 1 1.5225 0.1783 5.8864 11 1 3.8951 -0.3220 5.9140 12 1 3.0940 1.6960 4.8339 13 6 2.0324 -0.7104 -1.2304 14 6 2.4588 0.0193 -2.3242 15 6 2.9192 -0.6325 -3.4530 16 6 2.9540 -2.0139 -3.4876 17 6 3.4564 -2.7245 -4.7180 18 7 4.9018 -2.9352 -4.6043 19 6 5.5720 -3.5569 -5.5945 20 8 4.9772 -3.9425 -6.5826 21 6 7.0232 -3.7689 -5.4801 22 6 7.6848 -4.3820 -6.4575 23 6 7.3374 -4.9969 -7.7967 24 6 8.5682 -5.8964 -7.6278 25 6 9.1202 -4.7829 -6.7244 26 6 2.5232 -2.7438 -2.3955 27 6 2.0664 -2.0920 -1.2652 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 2.2491 -1.6316 1.1528 32 1 3.2494 -2.3954 4.2420 33 1 2.4316 1.0986 -2.2972 34 1 3.2519 -0.0623 -4.3077 35 1 3.2458 -2.1183 -5.5991 36 1 2.9550 -3.6878 -4.8114 37 1 5.3761 -2.6278 -3.8160 38 1 7.5514 -3.4268 -4.6024 39 1 6.3953 -5.5451 -7.7932 40 1 7.4185 -4.2995 -8.6305 41 1 9.1387 -6.0429 -8.5449 42 1 8.3593 -6.8275 -7.1010 43 1 9.6906 -4.0266 -7.2638 44 1 9.6398 -5.1554 -5.8416 45 1 2.5463 -3.8231 -2.4242 46 1 1.7329 -2.6621 -0.4107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754947074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:12 Heat of formation + Delta-G solvation = 15.289692 kcal Electronic energy + Delta-G solvation = -24401.618295 eV Core-core repulsion = 20870.391726 eV Total energy + Delta-G solvation = -3531.226569 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.03765 -40.39039 -39.20379 -37.40769 -35.70285 -34.11572 -32.36101 -31.85909 -31.28322 -29.96697 -27.23063 -26.65974 -25.85412 -24.24339 -23.71551 -22.89527 -21.70593 -21.10838 -19.44999 -19.31744 -18.03826 -17.41616 -17.00350 -16.68271 -16.46128 -16.21291 -15.86483 -15.69432 -15.42991 -15.16001 -14.99635 -14.76500 -14.45418 -14.26191 -13.77053 -13.55606 -13.42222 -13.32717 -13.05028 -12.91366 -12.82979 -12.71505 -12.63904 -12.43529 -12.13380 -12.01213 -11.90980 -11.60361 -11.56358 -11.48487 -11.00456 -10.77148 -10.33273 -9.93937 -9.79198 -9.54506 -9.02340 -7.93884 -5.22242 0.31132 0.37754 0.52942 1.47620 1.48979 1.57223 2.25866 2.30965 2.56396 2.93227 3.40376 3.44016 3.59435 3.66774 3.83704 3.87256 3.98859 4.04171 4.14914 4.20072 4.26954 4.35684 4.54018 4.59326 4.61576 4.67744 4.74699 4.77113 4.79594 4.85968 4.94380 5.00782 5.04542 5.06402 5.11868 5.21987 5.25385 5.36113 5.40145 5.41886 5.50897 5.55451 5.63457 5.67067 5.83666 6.09608 6.28383 6.58105 7.24378 7.34553 8.09176 8.33417 9.29681 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017523 B = 0.002228 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.487135 B =12563.574501 C =13683.763414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.199 3.801 3 H 0.056 0.944 4 N -0.734 5.734 5 C -0.238 4.238 6 H 0.077 0.923 7 C -0.077 4.077 8 N -0.970 5.970 9 Si 0.972 3.028 10 H -0.289 1.289 11 H -0.297 1.297 12 H -0.269 1.269 13 C -0.074 4.074 14 C -0.121 4.121 15 C -0.093 4.093 16 C -0.115 4.115 17 C 0.173 3.827 18 N -0.714 5.714 19 C 0.545 3.455 20 O -0.585 6.585 21 C -0.215 4.215 22 C -0.070 4.070 23 C -0.116 4.116 24 C -0.135 4.135 25 C -0.099 4.099 26 C -0.099 4.099 27 C -0.123 4.123 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.374 0.626 32 H 0.250 0.750 33 H 0.139 0.861 34 H 0.147 0.853 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.412 0.588 38 H 0.155 0.845 39 H 0.061 0.939 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.119 0.881 44 H 0.090 0.910 45 H 0.130 0.870 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.330 -2.567 -22.868 24.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.091 3.909 3 H 0.074 0.926 4 N -0.376 5.376 5 C -0.369 4.369 6 H 0.095 0.905 7 C -0.269 4.269 8 N -0.621 5.621 9 Si 0.801 3.199 10 H -0.216 1.216 11 H -0.224 1.224 12 H -0.193 1.193 13 C -0.075 4.075 14 C -0.139 4.139 15 C -0.111 4.111 16 C -0.116 4.116 17 C 0.050 3.950 18 N -0.365 5.365 19 C 0.335 3.665 20 O -0.467 6.467 21 C -0.235 4.235 22 C -0.072 4.072 23 C -0.153 4.153 24 C -0.172 4.172 25 C -0.136 4.136 26 C -0.118 4.118 27 C -0.142 4.142 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.208 0.792 32 H 0.059 0.941 33 H 0.157 0.843 34 H 0.165 0.835 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.248 0.752 38 H 0.173 0.827 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.101 0.899 43 H 0.137 0.863 44 H 0.108 0.892 45 H 0.148 0.852 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.889 -2.675 -23.432 25.204 hybrid contribution -0.069 -0.013 1.909 1.910 sum 8.820 -2.688 -21.523 23.415 Atomic orbital electron populations 1.22265 0.96873 1.00860 1.00923 1.19423 0.92986 0.94753 0.83764 0.92621 1.42722 1.78472 1.10451 1.05909 1.19634 1.34795 0.94329 0.88177 0.90469 1.25539 1.03028 0.96929 1.01418 1.69815 1.52659 1.10228 1.29376 0.85161 0.76788 0.78107 0.79837 1.21609 1.22364 1.19341 1.20328 0.97385 0.94174 0.95617 1.21196 0.99333 1.00681 0.92675 1.21212 0.98164 0.93524 0.98210 1.19747 1.02494 0.94030 0.95285 1.20040 0.80322 0.99700 0.94926 1.45973 1.08758 1.59621 1.22157 1.18881 0.88477 0.76985 0.82111 1.90742 1.71098 1.52589 1.32306 1.21704 0.92100 1.07013 1.02703 1.23926 0.99390 0.88937 0.94938 1.22324 0.99337 0.98653 0.95019 1.22724 0.96467 0.96880 1.01164 1.22411 0.91766 0.98415 1.00959 1.21116 0.98012 1.00227 0.92418 1.20967 1.00719 0.94484 0.98007 0.93817 0.91195 0.94170 0.79234 0.94109 0.84336 0.83546 0.90343 0.91305 0.75209 0.82743 0.92063 0.87905 0.88500 0.89864 0.86314 0.89158 0.85213 0.87828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 9.47 71.98 0.68 -4.62 16 2 C 0.20 7.80 3.09 44.24 0.14 7.94 16 3 H 0.06 2.16 7.94 -2.38 -0.02 2.15 16 4 N -0.73 -36.76 5.07 -326.49 -1.66 -38.42 16 5 C -0.24 -13.06 9.93 84.03 0.83 -12.22 16 6 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 7 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 8 N -0.97 -59.20 13.06 21.65 0.28 -58.92 16 9 Si 0.97 45.93 29.55 68.60 2.03 47.96 16 10 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 13 C -0.07 -2.50 4.95 -19.87 -0.10 -2.60 16 14 C -0.12 -3.25 9.67 22.27 0.22 -3.03 16 15 C -0.09 -2.11 9.70 22.27 0.22 -1.89 16 16 C -0.12 -2.70 5.25 -19.87 -0.10 -2.81 16 17 C 0.17 3.73 5.80 85.63 0.50 4.23 16 18 N -0.71 -14.75 5.54 -470.44 -2.61 -17.36 16 19 C 0.54 12.94 7.76 86.57 0.67 13.62 16 20 O -0.58 -17.86 15.15 -4.05 -0.06 -17.92 16 21 C -0.21 -3.94 10.03 23.43 0.23 -3.71 16 22 C -0.07 -1.18 6.93 -17.17 -0.12 -1.30 16 23 C -0.12 -1.94 6.99 30.05 0.21 -1.73 16 24 C -0.14 -1.46 8.17 30.93 0.25 -1.20 16 25 C -0.10 -1.00 7.95 30.15 0.24 -0.76 16 26 C -0.10 -2.73 9.70 22.27 0.22 -2.52 16 27 C -0.12 -4.17 9.06 22.27 0.20 -3.97 16 28 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.37 20.10 6.07 -92.70 -0.56 19.54 16 32 H 0.25 14.84 8.31 -92.71 -0.77 14.06 16 33 H 0.14 3.19 8.04 -2.91 -0.02 3.17 16 34 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 35 H 0.08 1.64 8.09 -2.39 -0.02 1.62 16 36 H 0.07 1.57 8.08 -2.39 -0.02 1.55 16 37 H 0.41 7.30 8.45 -92.71 -0.78 6.52 16 38 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 39 H 0.06 1.33 7.49 -2.39 -0.02 1.31 16 40 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.13 3.21 8.06 -2.91 -0.02 3.18 16 46 H 0.10 3.96 6.92 -2.91 -0.02 3.94 16 Total: -1.00 -69.71 386.17 2.38 -67.34 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: -0.36 Total: 37.83 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: 4.75 Total: -20.51 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -3.98 Total: -114.70 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.06 Total: -17.92 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -69.71 2.38 -67.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754947074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.629 kcal (2) G-P(sol) polarization free energy of solvation -69.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds