Wall clock time and date at job start Tue Mar 31 2020 10:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 120.00316 * 2 1 4 4 H 1.48497 * 109.47395 * 270.00534 * 3 2 1 5 5 H 1.48511 * 109.47143 * 30.00285 * 3 2 1 6 6 H 1.48497 * 109.47468 * 150.00000 * 3 2 1 7 7 C 1.37872 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00298 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99814 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47065 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47265 * 179.97438 * 11 10 9 13 13 C 1.46961 * 111.00234 * 169.99818 * 12 11 10 14 14 C 1.53046 * 109.36684 * 183.19084 * 13 12 11 15 15 N 1.46962 * 109.36349 * 301.60096 * 14 13 12 16 16 C 1.46899 * 110.99576 * 183.18748 * 15 14 13 17 17 C 1.50703 * 109.46550 * 170.00218 * 16 15 14 18 18 C 1.32564 * 120.00027 * 125.00385 * 17 16 15 19 19 C 1.47815 * 120.00319 * 179.97438 * 18 17 16 20 20 C 1.39531 * 120.14192 * 179.97438 * 19 18 17 21 21 C 1.37972 * 119.85483 * 179.97438 * 20 19 18 22 22 C 1.38345 * 120.14331 * 359.97438 * 21 20 19 23 23 C 1.38345 * 120.28513 * 0.02562 * 22 21 20 24 24 C 1.37975 * 120.14228 * 0.02562 * 23 22 21 25 25 C 1.46950 * 110.87741 * 59.32144 * 15 14 13 26 26 C 1.46950 * 111.00172 * 293.80359 * 12 11 10 27 27 H 0.97009 * 119.99283 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47253 * 59.99688 * 9 7 2 29 29 H 1.08993 * 109.47149 * 299.99234 * 9 7 2 30 30 H 1.08999 * 109.47430 * 60.00365 * 10 9 7 31 31 H 1.08999 * 109.47798 * 300.00142 * 10 9 7 32 32 H 1.08999 * 109.46988 * 60.00254 * 11 10 9 33 33 H 1.09003 * 109.47287 * 300.00057 * 11 10 9 34 34 H 1.09010 * 109.48508 * 63.22038 * 13 12 11 35 35 H 1.09001 * 109.50679 * 303.17404 * 13 12 11 36 36 H 1.09000 * 109.48830 * 181.63314 * 14 13 12 37 37 H 1.08994 * 109.48844 * 61.56986 * 14 13 12 38 38 H 1.08995 * 109.47463 * 50.00347 * 16 15 14 39 39 H 1.08995 * 109.47250 * 289.99593 * 16 15 14 40 40 H 1.08005 * 120.00327 * 304.99537 * 17 16 15 41 41 H 1.08005 * 120.00176 * 359.97438 * 18 17 16 42 42 H 1.08000 * 120.07490 * 359.96214 * 20 19 18 43 43 H 1.08004 * 119.93207 * 180.02562 * 21 20 19 44 44 H 1.07997 * 119.86073 * 179.74273 * 22 21 20 45 45 H 1.08003 * 119.92854 * 179.97438 * 23 22 21 46 46 H 1.07998 * 120.07404 * 180.02562 * 24 23 22 47 47 H 1.09000 * 109.49531 * 60.64767 * 25 15 14 48 48 H 1.09002 * 109.49088 * 180.71069 * 25 15 14 49 49 H 1.09004 * 109.48883 * 296.77701 * 26 12 11 50 50 H 1.09000 * 109.49150 * 56.84213 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5514 -2.6368 -0.0022 12 7 6.0410 -4.0218 -0.0015 13 6 7.4902 -4.0683 -0.2409 14 6 7.9464 -5.5274 -0.3118 15 7 7.6009 -6.2075 0.9444 16 6 8.0905 -7.5925 0.9450 17 6 7.9394 -8.1780 2.3254 18 6 7.2679 -9.3081 2.4962 19 6 7.1202 -9.8827 3.8501 20 6 6.4136 -11.0718 4.0332 21 6 6.2798 -11.6032 5.2995 22 6 6.8449 -10.9599 6.3861 23 6 7.5467 -9.7806 6.2112 24 6 7.6869 -9.2382 4.9503 25 6 6.1517 -6.1611 1.1836 26 6 5.6955 -4.7018 1.2545 27 1 -0.4849 0.8402 0.0004 28 1 3.8752 -0.6805 0.8888 29 1 3.8745 -0.6802 -0.8911 30 1 3.6577 -3.1507 -0.8907 31 1 3.6584 -3.1504 0.8892 32 1 5.9154 -2.1227 0.8873 33 1 5.9140 -2.1233 -0.8927 34 1 8.0097 -3.5639 0.5740 35 1 7.7198 -3.5693 -1.1824 36 1 9.0256 -5.5642 -0.4604 37 1 7.4473 -6.0244 -1.1436 38 1 9.1418 -7.6064 0.6575 39 1 7.5117 -8.1828 0.2347 40 1 8.3784 -7.6769 3.1756 41 1 6.8287 -9.8091 1.6461 42 1 5.9721 -11.5751 3.1858 43 1 5.7334 -12.5238 5.4427 44 1 6.7338 -11.3777 7.3758 45 1 7.9852 -9.2830 7.0636 46 1 8.2354 -8.3178 4.8150 47 1 5.6322 -6.6653 0.3688 48 1 5.9224 -6.6599 2.1253 49 1 6.1946 -4.2048 2.0864 50 1 4.6163 -4.6650 1.4031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070945723.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:25 Heat of formation + Delta-G solvation = 42.230753 kcal Electronic energy + Delta-G solvation = -24825.777463 eV Core-core repulsion = 21431.552241 eV Total energy + Delta-G solvation = -3394.225222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.63244 -39.25485 -36.58397 -34.62421 -33.39330 -31.70058 -31.26870 -30.90000 -30.35433 -28.03469 -26.06447 -24.24620 -23.69916 -23.07597 -22.12848 -21.71131 -19.92973 -19.76817 -19.50419 -17.46291 -16.72640 -16.23632 -15.76063 -15.37281 -15.25677 -15.03223 -14.63805 -14.45413 -14.30980 -14.05196 -13.83926 -13.66288 -13.61009 -13.23980 -12.94639 -12.65084 -12.53432 -12.14604 -11.96170 -11.75007 -11.55790 -11.33308 -11.26365 -11.18546 -11.10204 -10.88896 -10.77911 -10.60731 -10.41739 -9.87273 -9.63837 -9.53453 -9.25853 -9.13736 -8.54936 -8.50534 -8.39427 -8.09951 -6.00991 -3.98456 0.61767 1.10460 2.18803 3.32680 3.39789 3.43759 3.60472 3.78215 4.08209 4.37736 4.48015 4.48284 4.65960 4.74802 4.84334 4.88993 4.90748 5.07643 5.12565 5.13102 5.26423 5.28144 5.32970 5.34732 5.43335 5.46010 5.52819 5.65668 5.69248 5.71914 5.72396 5.85212 5.90895 5.98955 6.03036 6.06955 6.13234 6.20481 6.20922 6.31100 6.49019 6.57906 6.59204 6.68455 6.86069 6.89267 6.95376 7.28000 7.30036 7.39888 7.50481 7.83871 8.58546 9.04692 9.61763 11.12585 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.015420 B = 0.002110 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.423146 B =13269.951012 C =14453.561501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.097 4.097 11 C 0.055 3.945 12 N -0.540 5.540 13 C 0.056 3.944 14 C 0.059 3.941 15 N -0.538 5.538 16 C 0.082 3.918 17 C -0.124 4.124 18 C -0.126 4.126 19 C -0.051 4.051 20 C -0.112 4.112 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.115 4.115 25 C 0.059 3.941 26 C 0.055 3.945 27 H 0.262 0.738 28 H 0.013 0.987 29 H 0.011 0.989 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.040 0.960 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.042 0.958 48 H 0.078 0.922 49 H 0.039 0.961 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.459 -22.100 7.488 31.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.135 4.135 11 C -0.072 4.072 12 N -0.265 5.265 13 C -0.072 4.072 14 C -0.069 4.069 15 N -0.262 5.262 16 C -0.045 4.045 17 C -0.143 4.143 18 C -0.145 4.145 19 C -0.051 4.051 20 C -0.130 4.130 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.136 4.136 24 C -0.133 4.133 25 C -0.069 4.069 26 C -0.074 4.074 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.029 0.971 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.058 0.942 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.143 0.857 47 H 0.060 0.940 48 H 0.097 0.903 49 H 0.057 0.943 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 20.308 -21.966 7.473 30.835 hybrid contribution 0.295 0.931 0.032 0.977 sum 20.603 -21.035 7.505 30.386 Atomic orbital electron populations 1.69928 1.06281 1.26784 1.51415 1.25049 0.94751 0.99184 0.94697 0.86761 0.80319 0.83629 0.78452 1.20329 1.21452 1.19091 1.21146 0.89523 0.94425 1.50420 0.91051 1.19554 0.97153 0.92364 0.96067 1.21471 0.90995 0.99482 1.01550 1.22297 0.97996 0.86795 1.00161 1.62207 1.12601 1.17388 1.34333 1.22126 0.88618 0.95519 1.00966 1.22156 1.00025 0.94529 0.90206 1.62166 1.14818 1.14509 1.34749 1.21138 1.00715 0.88681 0.93955 1.23308 0.97505 0.95219 0.98232 1.21678 1.00696 0.97350 0.94766 1.19068 0.97867 0.94964 0.93163 1.21279 0.98854 0.95444 0.97409 1.21103 0.99868 1.00067 0.92733 1.21219 0.98259 0.95886 0.98873 1.21110 0.99203 0.96135 0.97153 1.21356 0.99785 0.99926 0.92256 1.22190 0.86652 0.96990 1.01035 1.22199 1.01436 0.93121 0.90600 0.92814 0.96871 0.97097 0.92080 0.92866 0.95293 0.91261 0.94336 0.90415 0.90567 0.93919 0.89764 0.94173 0.86301 0.86500 0.85918 0.86018 0.86165 0.85983 0.85691 0.93963 0.90344 0.94318 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.35 13.96 55.43 0.77 -27.58 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -1.97 5.09 -26.73 -0.14 -2.11 16 11 C 0.05 0.92 4.96 -3.82 -0.02 0.90 16 12 N -0.54 -8.02 4.71 -234.46 -1.10 -9.12 16 13 C 0.06 0.69 5.61 -3.77 -0.02 0.67 16 14 C 0.06 0.62 5.61 -3.77 -0.02 0.60 16 15 N -0.54 -5.78 4.70 -235.92 -1.11 -6.88 16 16 C 0.08 0.71 5.41 -4.98 -0.03 0.68 16 17 C -0.12 -1.05 8.00 -36.21 -0.29 -1.34 16 18 C -0.13 -1.06 9.52 -37.57 -0.36 -1.42 16 19 C -0.05 -0.46 5.87 -105.01 -0.62 -1.07 16 20 C -0.11 -0.93 9.79 -39.20 -0.38 -1.31 16 21 C -0.12 -0.91 10.03 -39.64 -0.40 -1.31 16 22 C -0.12 -0.94 10.04 -39.50 -0.40 -1.34 16 23 C -0.12 -0.94 10.03 -39.64 -0.40 -1.33 16 24 C -0.12 -1.00 9.40 -39.19 -0.37 -1.37 16 25 C 0.06 0.71 5.44 -3.77 -0.02 0.69 16 26 C 0.05 0.77 5.41 -3.77 -0.02 0.75 16 27 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 29 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.05 1.08 6.49 -51.93 -0.34 0.75 16 32 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 33 H 0.07 1.12 8.03 -51.93 -0.42 0.71 16 34 H 0.04 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 36 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.64 8.03 -51.93 -0.42 0.22 16 39 H 0.04 0.35 7.79 -51.93 -0.40 -0.06 16 40 H 0.12 1.01 6.04 -52.48 -0.32 0.69 16 41 H 0.12 0.88 7.87 -52.48 -0.41 0.47 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 44 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 46 H 0.13 0.96 6.17 -52.49 -0.32 0.63 16 47 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.08 0.90 7.20 -51.93 -0.37 0.52 16 49 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.09 1.32 6.34 -51.93 -0.33 0.99 16 LS Contribution 393.17 15.07 5.93 5.93 Total: -1.00 -31.77 393.17 -12.95 -44.72 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -8.75 Total: -2.14 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -4.02 Total: -22.33 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: -1.44 Total: -43.59 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.77 -12.95 -44.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070945723.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.947 kcal (2) G-P(sol) polarization free energy of solvation -31.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds