Wall clock time and date at job start Tue Mar 31 2020 11:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38309 * 119.96248 * 2 1 4 4 C 1.38268 * 120.14906 * 180.02562 * 3 2 1 5 5 C 1.38126 * 120.07285 * 359.74798 * 4 3 2 6 6 C 1.38893 * 119.92330 * 0.53265 * 5 4 3 7 7 N 1.39673 * 120.07329 * 179.74975 * 6 5 4 8 8 C 1.46962 * 110.99699 * 299.72036 * 7 6 5 9 9 C 1.53051 * 109.36245 * 183.19110 * 8 7 6 10 10 N 1.46955 * 109.36629 * 301.59275 * 9 8 7 11 11 C 1.46902 * 111.00596 * 183.19048 * 10 9 8 12 12 C 1.52997 * 109.47169 * 160.85821 * 11 10 9 13 13 C 1.50697 * 115.55044 * 60.48947 * 12 11 10 14 14 H 1.08000 * 119.99810 * 232.83649 * 13 12 11 15 15 C 1.37879 * 120.00248 * 52.83398 * 13 12 11 16 16 N 1.31517 * 119.99640 * 5.95405 * 15 13 12 17 17 Si 1.86804 * 119.99938 * 186.23154 * 15 13 12 18 18 H 1.48498 * 109.46941 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47051 * 120.00053 * 17 15 13 20 20 H 1.48503 * 109.46690 * 239.99844 * 17 15 13 21 21 C 1.53006 * 117.49604 * 206.15384 * 12 11 10 22 22 C 1.53002 * 117.49811 * 274.81509 * 12 11 10 23 23 C 1.46961 * 110.87861 * 59.32231 * 10 9 8 24 24 C 1.46955 * 111.00482 * 63.51503 * 7 6 5 25 25 C 1.38078 * 119.96159 * 180.02562 * 2 1 3 26 26 C 1.50703 * 120.03879 * 359.97233 * 25 2 1 27 27 H 1.09001 * 109.47114 * 269.97665 * 1 2 3 28 28 H 1.09001 * 109.47055 * 29.97204 * 1 2 3 29 29 H 1.08996 * 109.47124 * 149.97474 * 1 2 3 30 30 H 1.07993 * 119.92651 * 359.97438 * 3 2 1 31 31 H 1.07995 * 119.96061 * 180.02562 * 4 3 2 32 32 H 1.07998 * 120.03890 * 180.27055 * 5 4 3 33 33 H 1.08994 * 109.49290 * 63.22209 * 8 7 6 34 34 H 1.08997 * 109.50532 * 303.16688 * 8 7 6 35 35 H 1.09002 * 109.48870 * 181.63215 * 9 8 7 36 36 H 1.08997 * 109.49515 * 61.56357 * 9 8 7 37 37 H 1.08998 * 109.46396 * 40.85425 * 11 10 9 38 38 H 1.09004 * 109.47019 * 280.86448 * 11 10 9 39 39 H 0.96999 * 119.99523 * 185.05406 * 16 15 13 40 40 H 1.08999 * 117.50093 * 215.00236 * 21 12 11 41 41 H 1.08999 * 117.49722 * 0.03172 * 21 12 11 42 42 H 1.08998 * 117.50174 * 359.97438 * 22 12 11 43 43 H 1.08994 * 117.49347 * 144.98153 * 22 12 11 44 44 H 1.09003 * 109.48826 * 60.64478 * 23 10 9 45 45 H 1.08994 * 109.49178 * 180.71123 * 23 10 9 46 46 H 1.09004 * 109.49284 * 296.78183 * 24 7 6 47 47 H 1.09007 * 109.48584 * 56.82356 * 24 7 6 48 48 H 1.09001 * 109.47357 * 270.02454 * 26 25 2 49 49 H 1.09004 * 109.46823 * 30.02722 * 26 25 2 50 50 H 1.09002 * 109.47055 * 150.01982 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2027 -0.0005 5 6 4.2765 0.0097 0.0042 6 6 3.5859 -1.1954 -0.0017 7 7 4.2866 -2.4036 -0.0022 8 6 5.1438 -2.5147 -1.1908 9 6 5.8315 -3.8820 -1.1944 10 7 6.6203 -4.0341 0.0361 11 6 7.3573 -5.3048 0.0356 12 6 8.5011 -5.2314 1.0490 13 6 8.0887 -4.9918 2.4785 14 1 8.5325 -4.1831 3.0402 15 6 7.1447 -5.8048 3.0692 16 7 6.6904 -6.8589 2.4272 17 14 6.5055 -5.4048 4.7783 18 1 7.1668 -4.1728 5.2783 19 1 5.0373 -5.1904 4.7200 20 1 6.8049 -6.5338 5.6954 21 6 9.7191 -6.1249 0.8055 22 6 9.8207 -4.6140 0.5814 23 6 5.7631 -3.9229 1.2247 24 6 5.0754 -2.5557 1.2283 25 6 2.1966 -1.1963 -0.0005 26 6 1.4431 -2.5014 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 1.6560 2.1324 -0.0004 31 1 4.1167 2.1401 -0.0001 32 1 5.3564 0.0139 0.0082 33 1 5.8982 -1.7283 -1.1699 34 1 4.5354 -2.4113 -2.0892 35 1 6.4902 -3.9555 -2.0598 36 1 5.0780 -4.6681 -1.2428 37 1 7.7640 -5.4884 -0.9589 38 1 6.6823 -6.1164 0.3075 39 1 5.9744 -7.3890 2.8108 40 1 10.2221 -6.5393 1.6792 41 1 9.7056 -6.7646 -0.0770 42 1 9.8740 -4.2605 -0.4483 43 1 10.3902 -4.0342 1.3077 44 1 5.0087 -4.7094 1.2038 45 1 6.3718 -4.0262 2.1230 46 1 5.8290 -1.7697 1.2767 47 1 4.4168 -2.4818 2.0938 48 1 1.2614 -2.8161 1.0272 49 1 0.4906 -2.3710 -0.5143 50 1 2.0321 -3.2610 -0.5144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259271.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:05 Heat of formation + Delta-G solvation = 69.701996 kcal Electronic energy + Delta-G solvation = -27374.459935 eV Core-core repulsion = 23981.425955 eV Total energy + Delta-G solvation = -3393.033980 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.19238 -38.27593 -36.58422 -34.28111 -33.22950 -32.27147 -30.85545 -30.22834 -27.77514 -26.62746 -26.00797 -25.68311 -23.26637 -22.78523 -21.08036 -20.88864 -20.87953 -18.99527 -18.82980 -16.67845 -16.07455 -15.80783 -15.50463 -14.82495 -14.65354 -14.34529 -14.12835 -13.98409 -13.90080 -13.56191 -13.34935 -12.95412 -12.86838 -12.65995 -12.63154 -12.30631 -11.93023 -11.85644 -11.70021 -11.53100 -11.27111 -11.06630 -11.01206 -10.88587 -10.73459 -10.62027 -10.43113 -10.23083 -10.09566 -10.00073 -9.31114 -8.87998 -8.55981 -8.50276 -8.38537 -8.14651 -8.00220 -7.20386 -6.08230 -4.06110 1.36498 1.43962 3.22697 3.33262 3.35909 3.74424 4.10455 4.33054 4.78169 4.83637 4.92512 5.07848 5.12760 5.18813 5.24703 5.39269 5.47026 5.55550 5.58798 5.63557 5.66497 5.76674 5.83395 5.86060 5.89232 5.99848 6.01360 6.05768 6.11833 6.16775 6.31986 6.35982 6.40067 6.44415 6.53000 6.58775 6.66752 6.72898 6.76568 6.82222 6.88248 6.99430 7.03881 7.18556 7.24747 7.43089 7.46372 7.52827 7.70579 7.85484 8.20246 8.25541 8.47922 8.87349 9.45962 10.95689 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.016363 B = 0.004042 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.803452 B = 6926.200271 C = 7617.402083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.127 4.127 4 C -0.116 4.116 5 C -0.150 4.150 6 C 0.101 3.899 7 N -0.504 5.504 8 C 0.069 3.931 9 C 0.055 3.945 10 N -0.522 5.522 11 C 0.096 3.904 12 C 0.063 3.937 13 C -0.476 4.476 14 H 0.061 0.939 15 C 0.072 3.928 16 N -0.874 5.874 17 Si 0.873 3.127 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.283 1.283 21 C -0.193 4.193 22 C -0.200 4.200 23 C 0.044 3.956 24 C 0.063 3.937 25 C -0.065 4.065 26 C -0.107 4.107 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.042 0.958 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.031 0.969 37 H 0.031 0.969 38 H 0.070 0.930 39 H 0.260 0.740 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.027 0.973 45 H 0.138 0.862 46 H 0.041 0.959 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.059 0.941 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.991 11.403 -6.400 16.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.089 4.089 3 C -0.146 4.146 4 C -0.135 4.135 5 C -0.170 4.170 6 C 0.007 3.993 7 N -0.226 5.226 8 C -0.058 4.058 9 C -0.074 4.074 10 N -0.247 5.247 11 C -0.031 4.031 12 C 0.062 3.938 13 C -0.514 4.514 14 H 0.079 0.921 15 C -0.131 4.131 16 N -0.511 5.511 17 Si 0.699 3.301 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.209 1.209 21 C -0.232 4.232 22 C -0.237 4.237 23 C -0.083 4.083 24 C -0.063 4.063 25 C -0.066 4.066 26 C -0.164 4.164 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.046 0.954 45 H 0.155 0.845 46 H 0.059 0.941 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.078 0.922 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.067 11.165 -6.354 16.321 hybrid contribution -0.250 0.224 0.843 0.907 sum -10.317 11.389 -5.512 16.326 Atomic orbital electron populations 1.20823 0.91412 1.02609 1.02206 1.19679 0.95822 0.92494 1.00931 1.20939 0.94165 0.97178 1.02274 1.20940 0.94162 0.97597 1.00760 1.21717 1.00305 0.93114 1.01852 1.18782 0.92561 0.88814 0.99142 1.59878 1.28843 1.30016 1.03894 1.22142 0.94089 0.97889 0.91655 1.22117 0.95550 0.95154 0.94616 1.62022 1.25861 1.36311 1.00469 1.21571 0.96430 0.89767 0.95346 1.18766 0.84571 0.96216 0.94209 1.20496 1.22651 1.13375 0.94828 0.92103 1.24927 0.97004 0.94161 0.97018 1.69954 1.27000 1.15384 1.38800 0.86843 0.79237 0.78766 0.85233 1.19381 1.20441 1.20869 1.22850 1.08257 0.91568 1.00512 1.22778 1.06149 0.95478 0.99322 1.22905 0.95282 0.92415 0.97694 1.22395 0.94544 0.99513 0.89858 1.19669 0.92273 0.95039 0.99581 1.20700 0.98805 0.94620 1.02244 0.91338 0.91914 0.91122 0.86501 0.86475 0.86202 0.94017 0.91395 0.91412 0.95093 0.95002 0.91150 0.92951 0.90569 0.92070 0.91629 0.91035 0.95440 0.84482 0.94069 0.91480 0.91550 0.92235 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.60 36.01 0.35 -0.68 16 2 C -0.09 -1.06 5.88 -104.65 -0.62 -1.68 16 3 C -0.13 -1.46 9.70 -39.54 -0.38 -1.85 16 4 C -0.12 -1.41 10.04 -39.61 -0.40 -1.81 16 5 C -0.15 -2.11 8.64 -39.38 -0.34 -2.45 16 6 C 0.10 1.53 4.70 -83.79 -0.39 1.14 16 7 N -0.50 -8.33 3.63 -170.95 -0.62 -8.95 16 8 C 0.07 1.10 5.31 -3.76 -0.02 1.08 16 9 C 0.05 0.96 5.57 -3.77 -0.02 0.94 16 10 N -0.52 -10.83 4.64 -234.46 -1.09 -11.92 16 11 C 0.10 2.18 4.77 -3.82 -0.02 2.16 16 12 C 0.06 1.51 1.77 -155.66 -0.28 1.24 16 13 C -0.48 -12.24 6.53 -34.44 -0.22 -12.47 16 14 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 15 C 0.07 1.83 3.66 -17.82 -0.07 1.77 16 16 N -0.87 -23.23 11.48 55.43 0.64 -22.59 16 17 Si 0.87 20.03 29.03 -169.99 -4.93 15.10 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.19 -4.42 9.95 -26.69 -0.27 -4.68 16 22 C -0.20 -4.37 9.95 -26.69 -0.27 -4.64 16 23 C 0.04 0.95 4.74 -3.77 -0.02 0.93 16 24 C 0.06 1.16 5.35 -3.77 -0.02 1.14 16 25 C -0.06 -0.89 5.90 -104.42 -0.62 -1.51 16 26 C -0.11 -1.36 9.36 36.01 0.34 -1.02 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.07 0.60 5.94 -51.93 -0.31 0.29 16 30 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.12 1.70 7.06 -52.49 -0.37 1.33 16 33 H 0.04 0.67 7.25 -51.93 -0.38 0.30 16 34 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 35 H 0.07 1.11 8.00 -51.93 -0.42 0.69 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.03 0.68 7.82 -51.93 -0.41 0.28 16 38 H 0.07 1.79 6.19 -51.93 -0.32 1.47 16 39 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 40 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.14 3.27 3.23 -51.93 -0.17 3.11 16 46 H 0.04 0.77 7.43 -51.93 -0.39 0.38 16 47 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.06 0.62 5.95 -51.93 -0.31 0.31 16 50 H 0.08 1.11 7.46 -51.93 -0.39 0.73 16 LS Contribution 379.58 15.07 5.72 5.72 Total: -1.00 -26.38 379.58 -12.03 -38.41 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -8.49 Total: 6.63 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -3.26 Total: -22.38 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -1.07 Total: -43.47 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.93 Total: 15.10 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -26.38 -12.03 -38.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259271.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.109 kcal (2) G-P(sol) polarization free energy of solvation -26.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds