Wall clock time and date at job start Tue Mar 31 2020 11:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38309 * 119.96248 * 2 1 4 4 C 1.38268 * 120.14906 * 180.02562 * 3 2 1 5 5 C 1.38126 * 120.07285 * 359.74798 * 4 3 2 6 6 C 1.38893 * 119.92330 * 0.53265 * 5 4 3 7 7 N 1.39673 * 120.07329 * 179.74975 * 6 5 4 8 8 C 1.46962 * 110.99699 * 299.72036 * 7 6 5 9 9 C 1.53051 * 109.36245 * 183.19110 * 8 7 6 10 10 N 1.46955 * 109.36629 * 301.59275 * 9 8 7 11 11 C 1.46902 * 111.00596 * 183.19048 * 10 9 8 12 12 C 1.52997 * 109.47169 * 160.85821 * 11 10 9 13 13 C 1.50697 * 115.55044 * 60.48947 * 12 11 10 14 14 H 1.08000 * 119.99810 * 232.83649 * 13 12 11 15 15 C 1.37879 * 120.00248 * 52.83398 * 13 12 11 16 16 N 1.31517 * 119.99640 * 5.95405 * 15 13 12 17 17 Si 1.86804 * 119.99938 * 186.23154 * 15 13 12 18 18 H 1.48498 * 109.46941 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47051 * 120.00053 * 17 15 13 20 20 H 1.48503 * 109.46690 * 239.99844 * 17 15 13 21 21 C 1.53006 * 117.49604 * 206.15384 * 12 11 10 22 22 C 1.53002 * 117.49811 * 274.81509 * 12 11 10 23 23 C 1.46961 * 110.87861 * 59.32231 * 10 9 8 24 24 C 1.46955 * 111.00482 * 63.51503 * 7 6 5 25 25 C 1.38078 * 119.96159 * 180.02562 * 2 1 3 26 26 C 1.50703 * 120.03879 * 359.97233 * 25 2 1 27 27 H 1.09001 * 109.47114 * 269.97665 * 1 2 3 28 28 H 1.09001 * 109.47055 * 29.97204 * 1 2 3 29 29 H 1.08996 * 109.47124 * 149.97474 * 1 2 3 30 30 H 1.07993 * 119.92651 * 359.97438 * 3 2 1 31 31 H 1.07995 * 119.96061 * 180.02562 * 4 3 2 32 32 H 1.07998 * 120.03890 * 180.27055 * 5 4 3 33 33 H 1.08994 * 109.49290 * 63.22209 * 8 7 6 34 34 H 1.08997 * 109.50532 * 303.16688 * 8 7 6 35 35 H 1.09002 * 109.48870 * 181.63215 * 9 8 7 36 36 H 1.08997 * 109.49515 * 61.56357 * 9 8 7 37 37 H 1.08998 * 109.46396 * 40.85425 * 11 10 9 38 38 H 1.09004 * 109.47019 * 280.86448 * 11 10 9 39 39 H 0.96999 * 119.99523 * 185.05406 * 16 15 13 40 40 H 1.08999 * 117.50093 * 215.00236 * 21 12 11 41 41 H 1.08999 * 117.49722 * 0.03172 * 21 12 11 42 42 H 1.08998 * 117.50174 * 359.97438 * 22 12 11 43 43 H 1.08994 * 117.49347 * 144.98153 * 22 12 11 44 44 H 1.09003 * 109.48826 * 60.64478 * 23 10 9 45 45 H 1.08994 * 109.49178 * 180.71123 * 23 10 9 46 46 H 1.09004 * 109.49284 * 296.78183 * 24 7 6 47 47 H 1.09007 * 109.48584 * 56.82356 * 24 7 6 48 48 H 1.09001 * 109.47357 * 270.02454 * 26 25 2 49 49 H 1.09004 * 109.46823 * 30.02722 * 26 25 2 50 50 H 1.09002 * 109.47055 * 150.01982 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2027 -0.0005 5 6 4.2765 0.0097 0.0042 6 6 3.5859 -1.1954 -0.0017 7 7 4.2866 -2.4036 -0.0022 8 6 5.1438 -2.5147 -1.1908 9 6 5.8315 -3.8820 -1.1944 10 7 6.6203 -4.0341 0.0361 11 6 7.3573 -5.3048 0.0356 12 6 8.5011 -5.2314 1.0490 13 6 8.0887 -4.9918 2.4785 14 1 8.5325 -4.1831 3.0402 15 6 7.1447 -5.8048 3.0692 16 7 6.6904 -6.8589 2.4272 17 14 6.5055 -5.4048 4.7783 18 1 7.1668 -4.1728 5.2783 19 1 5.0373 -5.1904 4.7200 20 1 6.8049 -6.5338 5.6954 21 6 9.7191 -6.1249 0.8055 22 6 9.8207 -4.6140 0.5814 23 6 5.7631 -3.9229 1.2247 24 6 5.0754 -2.5557 1.2283 25 6 2.1966 -1.1963 -0.0005 26 6 1.4431 -2.5014 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 1.6560 2.1324 -0.0004 31 1 4.1167 2.1401 -0.0001 32 1 5.3564 0.0139 0.0082 33 1 5.8982 -1.7283 -1.1699 34 1 4.5354 -2.4113 -2.0892 35 1 6.4902 -3.9555 -2.0598 36 1 5.0780 -4.6681 -1.2428 37 1 7.7640 -5.4884 -0.9589 38 1 6.6823 -6.1164 0.3075 39 1 5.9744 -7.3890 2.8108 40 1 10.2221 -6.5393 1.6792 41 1 9.7056 -6.7646 -0.0770 42 1 9.8740 -4.2605 -0.4483 43 1 10.3902 -4.0342 1.3077 44 1 5.0087 -4.7094 1.2038 45 1 6.3718 -4.0262 2.1230 46 1 5.8290 -1.7697 1.2767 47 1 4.4168 -2.4818 2.0938 48 1 1.2614 -2.8161 1.0272 49 1 0.4906 -2.3710 -0.5143 50 1 2.0321 -3.2610 -0.5144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259271.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:04 Heat of formation + Delta-G solvation = 57.663176 kcal Electronic energy + Delta-G solvation = -27374.981977 eV Core-core repulsion = 23981.425955 eV Total energy + Delta-G solvation = -3393.556022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.34286 -39.70437 -38.17368 -35.74051 -34.23468 -34.17354 -31.96572 -31.74663 -29.02434 -27.77109 -27.59973 -27.05494 -24.79524 -24.29168 -22.85452 -22.10617 -21.85980 -20.86913 -20.25942 -18.12506 -17.67534 -16.82296 -16.69318 -16.61350 -16.04283 -15.92247 -15.78470 -15.39032 -15.06535 -14.91790 -14.57240 -14.48212 -14.14119 -13.82960 -13.58861 -13.54470 -13.42183 -13.21192 -13.02499 -12.76696 -12.71607 -12.66251 -12.51471 -12.28296 -12.18996 -12.14500 -11.99453 -11.80861 -11.77293 -11.52737 -11.16045 -10.77912 -10.40051 -9.89831 -9.48561 -9.42774 -9.42023 -8.93310 -8.06613 -6.08248 0.36718 0.46556 1.36075 1.42492 1.49559 2.40652 2.76393 2.85672 3.05432 3.25750 3.76451 3.94512 3.99758 4.02947 4.15366 4.15754 4.29514 4.32958 4.40050 4.40410 4.48384 4.50885 4.62178 4.65108 4.68205 4.74859 4.78629 4.84256 4.88981 4.90433 4.93102 4.97261 4.99969 5.04449 5.05551 5.15413 5.21775 5.24777 5.40851 5.44052 5.52883 5.56640 5.60036 5.63259 5.65200 5.74645 5.86050 5.96461 6.00427 6.41716 6.48369 6.54547 6.62210 6.88500 7.45533 8.96049 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.016363 B = 0.004042 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.803452 B = 6926.200271 C = 7617.402083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.124 4.124 4 C -0.117 4.117 5 C -0.163 4.163 6 C 0.075 3.925 7 N -0.506 5.506 8 C 0.077 3.923 9 C 0.055 3.945 10 N -0.523 5.523 11 C 0.107 3.893 12 C 0.036 3.964 13 C -0.484 4.484 14 H 0.048 0.952 15 C 0.044 3.956 16 N -0.897 5.897 17 Si 0.917 3.083 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.284 1.284 21 C -0.195 4.195 22 C -0.180 4.180 23 C 0.056 3.944 24 C 0.075 3.925 25 C -0.081 4.081 26 C -0.102 4.102 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.112 0.888 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.019 0.981 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.258 0.742 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.071 0.929 44 H -0.001 1.001 45 H 0.114 0.886 46 H 0.038 0.962 47 H 0.064 0.936 48 H 0.060 0.940 49 H 0.083 0.917 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.288 13.758 -7.313 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.142 4.142 4 C -0.135 4.135 5 C -0.183 4.183 6 C -0.018 4.018 7 N -0.228 5.228 8 C -0.050 4.050 9 C -0.073 4.073 10 N -0.248 5.248 11 C -0.021 4.021 12 C 0.036 3.964 13 C -0.522 4.522 14 H 0.066 0.934 15 C -0.156 4.156 16 N -0.534 5.534 17 Si 0.743 3.257 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.210 1.210 21 C -0.233 4.233 22 C -0.217 4.217 23 C -0.072 4.072 24 C -0.051 4.051 25 C -0.081 4.081 26 C -0.159 4.159 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.165 0.835 31 H 0.158 0.842 32 H 0.130 0.870 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.038 0.962 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.017 0.983 45 H 0.131 0.869 46 H 0.056 0.944 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.101 0.899 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.362 13.534 -7.272 19.108 hybrid contribution 0.129 -0.446 1.098 1.192 sum -11.232 13.088 -6.174 18.319 Atomic orbital electron populations 1.20883 0.89168 1.03835 1.03030 1.20055 0.97506 0.91937 0.99573 1.21334 0.94022 0.98251 1.00613 1.21232 0.94812 0.97711 0.99752 1.21727 1.00065 0.93648 1.02870 1.18879 0.93162 0.88345 1.01442 1.59783 1.28349 1.31615 1.03016 1.22090 0.94212 0.96451 0.92239 1.22205 0.95416 0.95983 0.93699 1.62023 1.26307 1.34989 1.01434 1.21357 0.95675 0.89653 0.95408 1.18894 0.85697 0.97956 0.93884 1.20588 1.22858 1.12899 0.95828 0.93385 1.25335 0.97050 0.93968 0.99292 1.70049 1.27362 1.16124 1.39911 0.86145 0.78818 0.78495 0.82271 1.18999 1.20227 1.20994 1.22823 1.07513 0.92463 1.00546 1.22764 1.04090 0.94634 1.00220 1.22610 0.94212 0.93215 0.97167 1.22133 0.94443 0.97415 0.91141 1.19873 0.91917 0.96190 1.00166 1.20653 0.99540 0.93795 1.01886 0.90578 0.89978 0.90668 0.83514 0.84249 0.86985 0.94048 0.89540 0.89629 0.96222 0.93782 0.94295 0.93217 0.91769 0.90879 0.89763 0.91011 0.98305 0.86902 0.94406 0.91779 0.92176 0.89861 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 9.60 71.24 0.68 -0.96 16 2 C -0.09 -1.92 5.88 -19.89 -0.12 -2.03 16 3 C -0.12 -2.43 9.70 22.29 0.22 -2.22 16 4 C -0.12 -2.54 10.04 22.25 0.22 -2.32 16 5 C -0.16 -4.41 8.64 22.40 0.19 -4.22 16 6 C 0.08 2.23 4.70 38.21 0.18 2.41 16 7 N -0.51 -16.74 3.63 -694.77 -2.52 -19.26 16 8 C 0.08 2.39 5.31 86.31 0.46 2.85 16 9 C 0.06 1.94 5.57 86.31 0.48 2.42 16 10 N -0.52 -21.93 4.64 -895.71 -4.16 -26.09 16 11 C 0.11 4.91 4.77 86.30 0.41 5.32 16 12 C 0.04 1.76 1.77 -52.93 -0.09 1.67 16 13 C -0.48 -25.41 6.53 25.60 0.17 -25.25 16 14 H 0.05 2.58 7.82 -2.91 -0.02 2.56 16 15 C 0.04 2.32 3.66 84.65 0.31 2.63 16 16 N -0.90 -49.02 11.48 21.45 0.25 -48.77 16 17 Si 0.92 41.92 29.03 68.60 1.99 43.91 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 21 C -0.19 -8.86 9.95 30.62 0.30 -8.56 16 22 C -0.18 -7.69 9.95 30.62 0.30 -7.39 16 23 C 0.06 2.46 4.74 86.31 0.41 2.87 16 24 C 0.08 2.84 5.35 86.31 0.46 3.30 16 25 C -0.08 -2.11 5.90 -19.74 -0.12 -2.23 16 26 C -0.10 -2.51 9.36 71.24 0.67 -1.84 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 29 H 0.07 1.03 5.94 -2.39 -0.01 1.02 16 30 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 31 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 32 H 0.11 3.12 7.06 -2.91 -0.02 3.10 16 33 H 0.04 1.30 7.25 -2.39 -0.02 1.28 16 34 H 0.09 2.38 8.13 -2.39 -0.02 2.36 16 35 H 0.09 2.68 8.00 -2.39 -0.02 2.66 16 36 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.04 1.87 7.82 -2.39 -0.02 1.85 16 38 H 0.04 2.04 6.19 -2.38 -0.01 2.03 16 39 H 0.26 13.71 8.32 -92.71 -0.77 12.94 16 40 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 43 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 44 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 45 H 0.11 5.57 3.23 -2.39 -0.01 5.57 16 46 H 0.04 1.43 7.43 -2.39 -0.02 1.41 16 47 H 0.06 2.41 8.13 -2.38 -0.02 2.39 16 48 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.08 1.58 5.95 -2.39 -0.01 1.56 16 50 H 0.06 1.67 7.46 -2.39 -0.02 1.65 16 Total: -1.00 -57.52 379.58 1.61 -55.91 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.90 Total: 27.85 kcal Atomic # 6 Polarization: -38.69 SS G_CDS: 5.14 Total: -33.54 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -6.43 Total: -94.12 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.99 Total: 43.91 kcal Total: -57.52 1.61 -55.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259271.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.574 kcal (2) G-P(sol) polarization free energy of solvation -57.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds