Wall clock time and date at job start Tue Mar 31 2020 10:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.46962 * 304.99960 * 10 9 7 12 12 N 1.46904 * 109.46801 * 64.99930 * 10 9 7 13 13 C 1.46901 * 110.99458 * 205.00032 * 12 10 9 14 14 H 1.08993 * 109.24976 * 35.00075 * 13 12 10 15 15 C 1.52823 * 109.25113 * 275.53844 * 13 12 10 16 16 C 1.53611 * 110.70678 * 185.92083 * 15 13 12 17 17 N 1.45669 * 107.76797 * 57.43716 * 16 15 13 18 18 C 1.47097 * 116.53633 * 177.29631 * 17 16 15 19 19 C 1.55193 * 103.52120 * 162.42092 * 18 17 16 20 20 C 1.54988 * 104.93338 * 336.00743 * 19 18 17 21 21 C 1.48724 * 109.34433 * 294.42625 * 17 16 15 22 22 H 1.08998 * 110.34058 * 309.51553 * 21 17 16 23 23 C 1.52248 * 107.50384 * 69.80252 * 21 17 16 24 24 C 1.50701 * 109.47150 * 184.99456 * 10 9 7 25 25 C 1.38235 * 120.00339 * 279.72968 * 24 10 9 26 26 C 1.38232 * 119.99645 * 179.81354 * 25 24 10 27 27 C 1.38227 * 120.00229 * 0.39103 * 26 25 24 28 28 C 1.38233 * 120.00333 * 359.86309 * 27 26 25 29 29 C 1.38233 * 119.99359 * 100.00129 * 24 10 9 30 30 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 32 32 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 33 33 H 1.00895 * 111.00102 * 328.95333 * 12 10 9 34 34 H 1.08998 * 109.23150 * 306.28262 * 15 13 12 35 35 H 1.09006 * 109.22289 * 65.64840 * 15 13 12 36 36 H 1.08996 * 109.82815 * 297.86371 * 16 15 13 37 37 H 1.09003 * 109.84315 * 177.01899 * 16 15 13 38 38 H 1.08994 * 110.61296 * 280.93196 * 18 17 16 39 39 H 1.09005 * 110.60966 * 43.76356 * 18 17 16 40 40 H 1.08997 * 110.34658 * 94.87348 * 19 18 17 41 41 H 1.09000 * 110.34650 * 217.03412 * 19 18 17 42 42 H 1.09003 * 110.48452 * 238.82462 * 20 19 18 43 43 H 1.09005 * 110.48782 * 116.18799 * 20 19 18 44 44 H 1.08995 * 109.83481 * 177.57447 * 23 21 17 45 45 H 1.08997 * 109.83854 * 56.60746 * 23 21 17 46 46 H 1.08000 * 119.99724 * 359.97438 * 25 24 10 47 47 H 1.08007 * 119.99788 * 180.23087 * 26 25 24 48 48 H 1.08003 * 120.00354 * 179.83852 * 27 26 25 49 49 H 1.08000 * 120.00094 * 179.97438 * 28 27 26 50 50 H 1.07996 * 120.00773 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 1 2.9295 -3.5594 -0.8240 12 7 3.0086 -3.6473 1.2735 13 6 4.3097 -4.3083 1.1062 14 1 4.6879 -4.1087 0.1037 15 6 4.1362 -5.8157 1.2885 16 6 5.4982 -6.5257 1.2665 17 7 6.3197 -5.9442 2.3196 18 6 7.6552 -6.5305 2.5105 19 6 8.4124 -5.4499 3.3275 20 6 7.6782 -4.1223 3.0107 21 6 6.6028 -4.5209 1.9942 22 1 6.9808 -4.4330 0.9757 23 6 5.2986 -3.7494 2.1412 24 6 1.4961 -4.9642 -0.0987 25 6 0.8993 -5.5210 1.0170 26 6 0.2087 -6.7135 0.9087 27 6 0.1218 -7.3534 -0.3135 28 6 0.7230 -6.7994 -1.4281 29 6 1.4104 -5.6048 -1.3207 30 1 -0.4850 -0.8401 -0.0004 31 1 0.6248 -2.5524 0.9029 32 1 0.6241 -2.5613 -0.8770 33 1 3.1230 -2.7052 1.6161 34 1 3.6458 -6.0078 2.2428 35 1 3.5156 -6.2057 0.4817 36 1 5.9777 -6.3760 0.2992 37 1 5.3628 -7.5916 1.4502 38 1 7.5888 -7.4611 3.0739 39 1 8.1413 -6.6988 1.5494 40 1 8.3538 -5.6705 4.3933 41 1 9.4535 -5.3945 3.0094 42 1 8.3676 -3.4000 2.5735 43 1 7.2193 -3.7156 3.9120 44 1 5.4722 -2.6901 1.9524 45 1 4.8990 -3.8863 3.1460 46 1 0.9704 -5.0229 1.9726 47 1 -0.2608 -7.1466 1.7796 48 1 -0.4156 -8.2865 -0.3975 49 1 0.6554 -7.2996 -2.3829 50 1 1.8800 -5.1719 -2.1915 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090664773.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:08 Heat of formation + Delta-G solvation = 15.268137 kcal Electronic energy + Delta-G solvation = -27138.182785 eV Core-core repulsion = 23742.788376 eV Total energy + Delta-G solvation = -3395.394409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.06385 -38.97067 -36.54993 -34.29957 -32.79574 -32.10199 -30.49159 -30.08690 -29.05758 -27.93506 -26.10629 -24.15323 -22.89529 -22.21336 -21.92274 -21.27479 -20.58029 -19.72445 -19.51474 -16.81133 -16.34028 -15.96334 -15.47323 -15.13369 -15.09643 -14.92694 -14.54566 -14.06467 -13.76051 -13.61954 -13.36326 -13.02823 -12.88932 -12.76185 -12.53536 -12.43405 -12.13078 -11.90576 -11.64280 -11.52394 -11.40851 -11.14233 -11.03749 -10.88570 -10.72041 -10.64501 -10.60437 -10.42180 -10.25020 -10.13018 -10.06386 -9.83509 -8.68204 -8.48819 -8.43697 -8.36937 -8.06048 -7.81082 -6.40101 -4.10917 1.81442 1.86790 3.40349 3.43306 3.58516 3.94218 4.24375 4.43293 4.50482 4.60770 4.75242 4.87054 5.06030 5.14658 5.24574 5.29072 5.32761 5.34254 5.38020 5.40294 5.46030 5.51271 5.57110 5.61570 5.67774 5.75003 5.77928 5.87079 5.91231 5.97565 5.99774 6.06819 6.07663 6.11944 6.20670 6.32534 6.37519 6.46893 6.49021 6.60672 6.65676 6.86820 6.92624 6.94263 7.16793 7.21106 7.26480 7.36686 7.46979 7.89605 8.08976 8.19457 8.39138 8.82610 9.61757 11.00326 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.008757 B = 0.005195 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.650484 B = 5387.988322 C = 8153.423301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.020 3.980 3 Si 1.068 2.932 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.604 4.604 8 H 0.047 0.953 9 C 0.015 3.985 10 C 0.135 3.865 11 H 0.039 0.961 12 N -0.674 5.674 13 C 0.092 3.908 14 H 0.031 0.969 15 C -0.099 4.099 16 C 0.057 3.943 17 N -0.521 5.521 18 C 0.041 3.959 19 C -0.121 4.121 20 C -0.116 4.116 21 C 0.066 3.934 22 H 0.047 0.953 23 C -0.106 4.106 24 C -0.050 4.050 25 C -0.087 4.087 26 C -0.129 4.129 27 C -0.137 4.137 28 C -0.127 4.127 29 C -0.127 4.127 30 H 0.271 0.729 31 H 0.019 0.981 32 H 0.012 0.988 33 H 0.360 0.640 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.028 0.972 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.036 0.964 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.128 0.872 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.112 0.888 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.112 -14.092 3.442 18.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.185 4.185 3 Si 0.897 3.103 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.643 4.643 8 H 0.065 0.935 9 C -0.022 4.022 10 C 0.025 3.975 11 H 0.057 0.943 12 N -0.308 5.308 13 C -0.018 4.018 14 H 0.049 0.951 15 C -0.138 4.138 16 C -0.072 4.072 17 N -0.246 5.246 18 C -0.087 4.087 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.043 4.043 22 H 0.065 0.935 23 C -0.144 4.144 24 C -0.051 4.051 25 C -0.105 4.105 26 C -0.147 4.147 27 C -0.156 4.156 28 C -0.145 4.145 29 C -0.145 4.145 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.030 0.970 33 H 0.182 0.818 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.054 0.946 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.100 0.900 46 H 0.145 0.855 47 H 0.131 0.869 48 H 0.129 0.871 49 H 0.130 0.870 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.289 -13.073 4.141 17.762 hybrid contribution 1.083 -1.086 -1.490 2.139 sum 12.372 -14.159 2.651 18.988 Atomic orbital electron populations 1.70738 1.06918 1.30828 1.45944 1.25765 0.96491 1.02553 0.93665 0.83548 0.74630 0.75328 0.76796 1.21352 1.21641 1.21021 1.21954 0.93904 0.91901 1.56501 0.93515 1.19372 0.94324 0.91680 0.96841 1.20525 0.94944 0.91916 0.90083 0.94273 1.60444 1.15911 1.25245 1.29205 1.21555 0.89484 0.94338 0.96435 0.95135 1.21637 0.94747 0.94348 1.03048 1.22049 0.94585 0.98834 0.91755 1.63932 1.14496 1.02679 1.43534 1.22824 0.89207 0.98127 0.98587 1.22520 0.98329 0.94487 1.00532 1.22147 0.96853 0.96935 0.99501 1.22387 0.95331 0.89324 0.97222 0.93502 1.21686 0.93433 0.98409 1.00922 1.20189 0.96531 0.95712 0.92692 1.21035 0.95632 0.94663 0.99149 1.21124 1.00047 0.96331 0.97218 1.20966 1.01229 1.00040 0.93314 1.20964 0.99072 0.96342 0.98109 1.21031 1.00553 0.95532 0.97416 0.91876 0.96263 0.96967 0.81782 0.90681 0.91606 0.95421 0.91056 0.90487 0.94603 0.91069 0.91700 0.91476 0.90638 0.91531 0.90025 0.85453 0.86876 0.87095 0.86986 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.35 13.65 55.43 0.76 -26.59 16 2 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 3 Si 1.07 24.75 29.90 -169.99 -5.08 19.67 16 4 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.60 -16.26 8.12 -34.44 -0.28 -16.54 16 8 H 0.05 1.23 7.49 -52.49 -0.39 0.84 16 9 C 0.02 0.37 3.86 -27.88 -0.11 0.27 16 10 C 0.14 2.74 2.19 -68.86 -0.15 2.59 16 11 H 0.04 0.84 7.28 -51.93 -0.38 0.46 16 12 N -0.67 -12.41 5.40 -100.69 -0.54 -12.95 16 13 C 0.09 1.46 2.56 -67.46 -0.17 1.29 16 14 H 0.03 0.53 7.41 -51.93 -0.39 0.14 16 15 C -0.10 -1.46 4.75 -26.50 -0.13 -1.58 16 16 C 0.06 0.72 5.87 -4.17 -0.02 0.70 16 17 N -0.52 -6.47 4.84 -224.50 -1.09 -7.56 16 18 C 0.04 0.42 6.71 -2.56 -0.02 0.40 16 19 C -0.12 -1.10 7.05 -24.52 -0.17 -1.27 16 20 C -0.12 -1.21 6.65 -25.55 -0.17 -1.38 16 21 C 0.07 0.82 2.50 -66.95 -0.17 0.65 16 22 H 0.05 0.61 7.97 -51.93 -0.41 0.20 16 23 C -0.11 -1.50 4.89 -26.77 -0.13 -1.63 16 24 C -0.05 -0.92 2.94 -104.62 -0.31 -1.23 16 25 C -0.09 -1.50 8.69 -39.58 -0.34 -1.84 16 26 C -0.13 -1.95 10.05 -39.59 -0.40 -2.34 16 27 C -0.14 -1.95 10.05 -39.59 -0.40 -2.35 16 28 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 29 C -0.13 -2.14 9.64 -39.58 -0.38 -2.52 16 30 H 0.27 8.18 7.22 -40.82 -0.29 7.89 16 31 H 0.02 0.51 8.01 -51.92 -0.42 0.09 16 32 H 0.01 0.33 8.00 -51.93 -0.42 -0.09 16 33 H 0.36 7.24 6.82 -39.29 -0.27 6.97 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.04 6.29 -51.93 -0.33 0.71 16 36 H 0.03 0.36 7.98 -51.93 -0.41 -0.06 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.79 8.00 -51.93 -0.42 0.38 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.13 2.29 7.71 -52.49 -0.40 1.88 16 47 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 48 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 49 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 50 H 0.11 1.83 8.04 -52.49 -0.42 1.41 16 LS Contribution 382.80 15.07 5.77 5.77 Total: -1.00 -28.76 382.80 -12.85 -41.61 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -8.82 Total: 8.65 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -3.84 Total: -28.59 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.87 Total: -47.10 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.67 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.76 -12.85 -41.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090664773.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.874 kcal (2) G-P(sol) polarization free energy of solvation -28.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds