Wall clock time and date at job start Tue Mar 31 2020 10:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.46962 * 304.99960 * 10 9 7 12 12 N 1.46904 * 109.46801 * 64.99930 * 10 9 7 13 13 C 1.46901 * 110.99458 * 205.00032 * 12 10 9 14 14 H 1.08993 * 109.24976 * 35.00075 * 13 12 10 15 15 C 1.52823 * 109.25113 * 275.53844 * 13 12 10 16 16 C 1.53611 * 110.70678 * 185.92083 * 15 13 12 17 17 N 1.45669 * 107.76797 * 57.43716 * 16 15 13 18 18 C 1.47097 * 116.53633 * 177.29631 * 17 16 15 19 19 C 1.55193 * 103.52120 * 162.42092 * 18 17 16 20 20 C 1.54988 * 104.93338 * 336.00743 * 19 18 17 21 21 C 1.48724 * 109.34433 * 294.42625 * 17 16 15 22 22 H 1.08998 * 110.34058 * 309.51553 * 21 17 16 23 23 C 1.52248 * 107.50384 * 69.80252 * 21 17 16 24 24 C 1.50701 * 109.47150 * 184.99456 * 10 9 7 25 25 C 1.38235 * 120.00339 * 279.72968 * 24 10 9 26 26 C 1.38232 * 119.99645 * 179.81354 * 25 24 10 27 27 C 1.38227 * 120.00229 * 0.39103 * 26 25 24 28 28 C 1.38233 * 120.00333 * 359.86309 * 27 26 25 29 29 C 1.38233 * 119.99359 * 100.00129 * 24 10 9 30 30 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 32 32 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 33 33 H 1.00895 * 111.00102 * 328.95333 * 12 10 9 34 34 H 1.08998 * 109.23150 * 306.28262 * 15 13 12 35 35 H 1.09006 * 109.22289 * 65.64840 * 15 13 12 36 36 H 1.08996 * 109.82815 * 297.86371 * 16 15 13 37 37 H 1.09003 * 109.84315 * 177.01899 * 16 15 13 38 38 H 1.08994 * 110.61296 * 280.93196 * 18 17 16 39 39 H 1.09005 * 110.60966 * 43.76356 * 18 17 16 40 40 H 1.08997 * 110.34658 * 94.87348 * 19 18 17 41 41 H 1.09000 * 110.34650 * 217.03412 * 19 18 17 42 42 H 1.09003 * 110.48452 * 238.82462 * 20 19 18 43 43 H 1.09005 * 110.48782 * 116.18799 * 20 19 18 44 44 H 1.08995 * 109.83481 * 177.57447 * 23 21 17 45 45 H 1.08997 * 109.83854 * 56.60746 * 23 21 17 46 46 H 1.08000 * 119.99724 * 359.97438 * 25 24 10 47 47 H 1.08007 * 119.99788 * 180.23087 * 26 25 24 48 48 H 1.08003 * 120.00354 * 179.83852 * 27 26 25 49 49 H 1.08000 * 120.00094 * 179.97438 * 28 27 26 50 50 H 1.07996 * 120.00773 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 1 2.9295 -3.5594 -0.8240 12 7 3.0086 -3.6473 1.2735 13 6 4.3097 -4.3083 1.1062 14 1 4.6879 -4.1087 0.1037 15 6 4.1362 -5.8157 1.2885 16 6 5.4982 -6.5257 1.2665 17 7 6.3197 -5.9442 2.3196 18 6 7.6552 -6.5305 2.5105 19 6 8.4124 -5.4499 3.3275 20 6 7.6782 -4.1223 3.0107 21 6 6.6028 -4.5209 1.9942 22 1 6.9808 -4.4330 0.9757 23 6 5.2986 -3.7494 2.1412 24 6 1.4961 -4.9642 -0.0987 25 6 0.8993 -5.5210 1.0170 26 6 0.2087 -6.7135 0.9087 27 6 0.1218 -7.3534 -0.3135 28 6 0.7230 -6.7994 -1.4281 29 6 1.4104 -5.6048 -1.3207 30 1 -0.4850 -0.8401 -0.0004 31 1 0.6248 -2.5524 0.9029 32 1 0.6241 -2.5613 -0.8770 33 1 3.1230 -2.7052 1.6161 34 1 3.6458 -6.0078 2.2428 35 1 3.5156 -6.2057 0.4817 36 1 5.9777 -6.3760 0.2992 37 1 5.3628 -7.5916 1.4502 38 1 7.5888 -7.4611 3.0739 39 1 8.1413 -6.6988 1.5494 40 1 8.3538 -5.6705 4.3933 41 1 9.4535 -5.3945 3.0094 42 1 8.3676 -3.4000 2.5735 43 1 7.2193 -3.7156 3.9120 44 1 5.4722 -2.6901 1.9524 45 1 4.8990 -3.8863 3.1460 46 1 0.9704 -5.0229 1.9726 47 1 -0.2608 -7.1466 1.7796 48 1 -0.4156 -8.2865 -0.3975 49 1 0.6554 -7.2996 -2.3829 50 1 1.8800 -5.1719 -2.1915 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090664773.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:07 Heat of formation + Delta-G solvation = -0.355969 kcal Electronic energy + Delta-G solvation = -27138.860297 eV Core-core repulsion = 23742.788376 eV Total energy + Delta-G solvation = -3396.071921 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.17028 -40.22934 -37.91812 -35.88222 -34.40090 -33.35161 -31.74357 -31.29650 -30.41852 -29.33058 -27.38000 -25.92774 -24.10338 -23.71815 -23.33435 -22.23740 -21.59364 -21.10306 -20.74205 -18.90080 -17.66544 -16.94105 -16.66932 -16.48978 -16.21209 -16.18058 -15.81820 -15.63673 -15.28127 -14.91082 -14.70694 -14.55437 -14.13712 -13.88446 -13.72593 -13.60273 -13.50671 -13.29606 -13.24086 -13.06298 -12.54716 -12.42882 -12.21789 -12.18152 -12.08751 -11.97073 -11.94823 -11.82064 -11.65938 -11.39772 -11.33887 -11.27393 -10.72054 -10.56682 -9.74378 -9.47421 -9.37890 -9.34538 -8.68472 -6.39803 0.53488 0.59995 1.50978 1.59782 1.76275 2.54607 2.94129 3.00560 3.10933 3.26627 3.57900 3.73981 3.93709 3.98455 4.03883 4.09816 4.14264 4.22800 4.28003 4.33406 4.35054 4.39045 4.41232 4.43918 4.60758 4.65175 4.67968 4.72929 4.76217 4.80819 4.83876 4.89531 4.99494 5.03938 5.06625 5.10076 5.18027 5.20239 5.25089 5.26030 5.30264 5.32110 5.42811 5.63130 5.68380 5.82910 5.92791 5.96097 6.14171 6.21445 6.25733 6.32647 6.50993 6.58299 7.42120 8.71498 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.008757 B = 0.005195 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.650484 B = 5387.988322 C = 8153.423301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.033 4.033 3 Si 1.117 2.883 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.286 1.286 7 C -0.607 4.607 8 H 0.050 0.950 9 C 0.025 3.975 10 C 0.150 3.850 11 H 0.022 0.978 12 N -0.671 5.671 13 C 0.095 3.905 14 H 0.015 0.985 15 C -0.086 4.086 16 C 0.063 3.937 17 N -0.532 5.532 18 C 0.039 3.961 19 C -0.115 4.115 20 C -0.115 4.115 21 C 0.067 3.933 22 H 0.041 0.959 23 C -0.100 4.100 24 C -0.072 4.072 25 C -0.101 4.101 26 C -0.128 4.128 27 C -0.129 4.129 28 C -0.123 4.123 29 C -0.143 4.143 30 H 0.255 0.745 31 H -0.005 1.005 32 H -0.017 1.017 33 H 0.346 0.654 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.027 0.973 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.040 0.960 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.075 0.925 46 H 0.111 0.889 47 H 0.139 0.861 48 H 0.148 0.852 49 H 0.143 0.857 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.834 -15.894 3.803 21.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.231 4.231 3 Si 0.939 3.061 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.211 1.211 7 C -0.645 4.645 8 H 0.068 0.932 9 C -0.012 4.012 10 C 0.040 3.960 11 H 0.040 0.960 12 N -0.303 5.303 13 C -0.015 4.015 14 H 0.033 0.967 15 C -0.125 4.125 16 C -0.066 4.066 17 N -0.257 5.257 18 C -0.089 4.089 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.042 4.042 22 H 0.059 0.941 23 C -0.138 4.138 24 C -0.072 4.072 25 C -0.119 4.119 26 C -0.146 4.146 27 C -0.147 4.147 28 C -0.141 4.141 29 C -0.161 4.161 30 H 0.064 0.936 31 H 0.013 0.987 32 H 0.002 0.998 33 H 0.167 0.833 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.129 0.871 47 H 0.157 0.843 48 H 0.166 0.834 49 H 0.160 0.840 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.029 -14.916 4.506 20.312 hybrid contribution 0.500 -0.622 -1.619 1.805 sum 13.529 -15.538 2.887 20.804 Atomic orbital electron populations 1.70879 1.08064 1.29865 1.48498 1.27307 0.96483 1.06608 0.92698 0.82928 0.74077 0.71241 0.77864 1.19556 1.19596 1.21136 1.22271 0.94189 0.92802 1.55193 0.93189 1.19183 0.94515 0.93332 0.94158 1.20192 0.93822 0.91737 0.90203 0.96018 1.60520 1.17445 1.24315 1.28050 1.21618 0.88444 0.95226 0.96241 0.96701 1.21467 0.95944 0.93258 1.01790 1.21956 0.93375 0.99241 0.92029 1.63922 1.15953 1.02681 1.43156 1.22929 0.87927 0.98831 0.99196 1.22522 0.98935 0.92984 1.00810 1.22157 0.96412 0.98063 0.98686 1.22352 0.94742 0.89386 0.97679 0.94122 1.21608 0.94067 0.98426 0.99681 1.19998 0.97937 0.95263 0.94033 1.20977 0.96859 0.95948 0.98121 1.21423 0.99094 0.95224 0.98877 1.21402 1.00069 1.00866 0.92316 1.21315 0.97677 0.95219 0.99850 1.21161 1.01513 0.96779 0.96689 0.93586 0.98690 0.99834 0.83313 0.91827 0.92787 0.95520 0.89683 0.89446 0.94158 0.90403 0.89878 0.90350 0.90925 0.91988 0.90658 0.87071 0.84340 0.83384 0.83958 0.87140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.40 13.65 21.45 0.29 -58.11 16 2 C -0.03 -1.90 5.46 84.65 0.46 -1.44 16 3 Si 1.12 50.14 29.90 68.60 2.05 52.20 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.61 -33.95 8.12 25.60 0.21 -33.74 16 8 H 0.05 2.71 7.49 -2.91 -0.02 2.69 16 9 C 0.03 1.35 3.86 29.85 0.12 1.46 16 10 C 0.15 6.49 2.19 44.17 0.10 6.59 16 11 H 0.02 1.00 7.28 -2.39 -0.02 0.98 16 12 N -0.67 -26.15 5.40 -472.47 -2.55 -28.70 16 13 C 0.09 3.11 2.56 45.08 0.12 3.23 16 14 H 0.01 0.54 7.41 -2.39 -0.02 0.52 16 15 C -0.09 -2.56 4.75 30.74 0.15 -2.41 16 16 C 0.06 1.55 5.87 86.74 0.51 2.05 16 17 N -0.53 -12.46 4.84 -864.20 -4.18 -16.64 16 18 C 0.04 0.70 6.71 87.02 0.58 1.28 16 19 C -0.11 -1.77 7.05 32.03 0.23 -1.54 16 20 C -0.12 -2.18 6.65 31.36 0.21 -1.97 16 21 C 0.07 1.61 2.50 44.40 0.11 1.72 16 22 H 0.04 1.03 7.97 -2.39 -0.02 1.01 16 23 C -0.10 -2.86 4.89 30.57 0.15 -2.71 16 24 C -0.07 -2.72 2.94 -19.87 -0.06 -2.78 16 25 C -0.10 -3.56 8.69 22.27 0.19 -3.36 16 26 C -0.13 -3.67 10.05 22.27 0.22 -3.44 16 27 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 28 C -0.12 -3.37 10.05 22.27 0.22 -3.15 16 29 C -0.14 -4.86 9.64 22.27 0.21 -4.65 16 30 H 0.25 16.28 7.22 -92.70 -0.67 15.61 16 31 H -0.01 -0.30 8.01 -2.38 -0.02 -0.32 16 32 H -0.02 -0.96 8.00 -2.39 -0.02 -0.98 16 33 H 0.35 14.77 6.82 -89.70 -0.61 14.15 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.05 1.73 6.29 -2.38 -0.01 1.71 16 36 H 0.03 0.66 7.98 -2.39 -0.02 0.65 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 39 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.07 1.42 8.00 -2.38 -0.02 1.40 16 44 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.11 4.21 7.71 -2.91 -0.02 4.19 16 47 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 48 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 49 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 50 H 0.11 3.70 8.04 -2.91 -0.02 3.68 16 Total: -1.00 -64.91 382.80 -0.06 -64.97 By element: Atomic # 1 Polarization: 33.81 SS G_CDS: 0.38 Total: 34.19 kcal Atomic # 6 Polarization: -51.85 SS G_CDS: 3.95 Total: -47.90 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -6.44 Total: -103.46 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.05 Total: 52.20 kcal Total: -64.91 -0.06 -64.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090664773.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.617 kcal (2) G-P(sol) polarization free energy of solvation -64.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds