Wall clock time and date at job start Tue Mar 31 2020 10:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00433 * 2 1 4 4 H 1.48501 * 109.47244 * 270.00166 * 3 2 1 5 5 H 1.48500 * 109.47386 * 30.00106 * 3 2 1 6 6 H 1.48502 * 109.47197 * 150.00026 * 3 2 1 7 7 C 1.37886 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99995 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46888 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47173 * 54.99798 * 10 9 7 12 12 N 1.46906 * 109.46945 * 294.99893 * 10 9 7 13 13 C 1.46902 * 110.99573 * 155.00126 * 12 10 9 14 14 H 1.08996 * 109.25028 * 325.00078 * 13 12 10 15 15 C 1.52821 * 109.24884 * 84.45893 * 13 12 10 16 16 C 1.53549 * 110.74481 * 66.50792 * 15 13 12 17 17 N 1.45666 * 107.78323 * 57.39620 * 16 15 13 18 18 C 1.47090 * 116.53588 * 177.32256 * 17 16 15 19 19 C 1.55187 * 103.52337 * 162.42230 * 18 17 16 20 20 C 1.55980 * 105.04239 * 335.46548 * 19 18 17 21 21 C 1.48729 * 109.34110 * 294.44433 * 17 16 15 22 22 H 1.08998 * 110.34294 * 309.52106 * 21 17 16 23 23 C 1.52255 * 107.49788 * 69.80519 * 21 17 16 24 24 C 1.50702 * 109.47117 * 174.99987 * 10 9 7 25 25 C 1.38238 * 120.00031 * 79.72635 * 24 10 9 26 26 C 1.38234 * 120.00068 * 179.74483 * 25 24 10 27 27 C 1.38238 * 119.99572 * 0.52815 * 26 25 24 28 28 C 1.38224 * 120.00313 * 359.74541 * 27 26 25 29 29 C 1.38226 * 120.00097 * 259.99915 * 24 10 9 30 30 H 0.97007 * 119.99674 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47275 * 60.00029 * 9 7 2 32 32 H 1.08998 * 109.47332 * 300.00039 * 9 7 2 33 33 H 1.00896 * 111.00309 * 31.04538 * 12 10 9 34 34 H 1.09001 * 109.23234 * 186.85099 * 15 13 12 35 35 H 1.08997 * 109.23124 * 306.22499 * 15 13 12 36 36 H 1.08996 * 109.80078 * 297.82477 * 16 15 13 37 37 H 1.09001 * 109.85254 * 176.99399 * 16 15 13 38 38 H 1.09000 * 110.61369 * 280.93021 * 18 17 16 39 39 H 1.09004 * 110.61441 * 43.75717 * 18 17 16 40 40 H 1.09002 * 110.35447 * 94.86762 * 19 18 17 41 41 H 1.09008 * 110.34906 * 217.03580 * 19 18 17 42 42 H 1.08998 * 111.03799 * 239.64235 * 20 19 18 43 43 H 1.09004 * 110.38974 * 116.68640 * 20 19 18 44 44 H 1.09006 * 109.83352 * 177.56944 * 23 21 17 45 45 H 1.08997 * 109.89522 * 56.64211 * 23 21 17 46 46 H 1.08007 * 119.99704 * 359.97438 * 25 24 10 47 47 H 1.07997 * 119.99937 * 180.29764 * 26 25 24 48 48 H 1.08004 * 119.99558 * 179.76733 * 27 26 25 49 49 H 1.08000 * 120.00270 * 179.97438 * 28 27 26 50 50 H 1.08006 * 120.00123 * 0.02562 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9292 -3.5553 0.8423 12 7 3.0081 -3.6540 -1.2548 13 6 4.3092 -4.3143 -1.0841 14 1 4.6875 -4.1097 -0.0826 15 6 4.1355 -5.8226 -1.2586 16 6 3.7455 -6.1615 -2.7045 17 7 4.7812 -5.6309 -3.5807 18 6 4.6287 -5.9029 -5.0181 19 6 5.5707 -4.8659 -5.6856 20 6 5.6914 -3.7042 -4.6518 21 6 4.7805 -4.1457 -3.5011 22 1 3.7720 -3.7589 -3.6474 23 6 5.2981 -3.7609 -2.1219 24 6 1.4956 -4.9637 0.1244 25 6 0.8891 -5.5204 -0.9861 26 6 0.2061 -6.7170 -0.8736 27 6 0.1203 -7.3513 0.3516 28 6 0.7220 -6.7917 1.4632 29 6 1.4098 -5.5980 1.3495 30 1 -0.4850 0.8401 0.0004 31 1 0.6245 -2.5571 -0.8897 32 1 0.6239 -2.5567 0.8903 33 1 3.1226 -2.7137 -1.6023 34 1 5.0723 -6.3227 -1.0128 35 1 3.3540 -6.1742 -0.5850 36 1 2.7869 -5.7021 -2.9457 37 1 3.6775 -7.2426 -2.8258 38 1 4.9482 -6.9183 -5.2526 39 1 3.5966 -5.7447 -5.3313 40 1 6.5462 -5.3110 -5.8819 41 1 5.1309 -4.4951 -6.6115 42 1 5.3404 -2.7640 -5.0770 43 1 6.7211 -3.6075 -4.3076 44 1 5.3541 -2.6756 -2.0375 45 1 6.2846 -4.1956 -1.9614 46 1 0.9521 -5.0224 -1.9424 47 1 -0.2636 -7.1544 -1.7422 48 1 -0.4165 -8.2843 0.4403 49 1 0.6546 -7.2871 2.4205 50 1 1.8795 -5.1606 2.2182 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090664781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:16 Heat of formation + Delta-G solvation = 21.132668 kcal Electronic energy + Delta-G solvation = -27651.252908 eV Core-core repulsion = 24256.112804 eV Total energy + Delta-G solvation = -3395.140104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.99938 -38.81383 -36.39916 -34.02977 -32.50783 -32.03266 -30.42372 -29.83728 -29.06859 -27.92652 -26.35890 -24.41051 -22.85911 -22.08338 -21.81036 -21.17976 -20.58508 -19.65158 -18.81200 -16.63310 -16.09367 -15.78223 -15.46941 -15.08503 -14.83615 -14.67126 -14.56867 -14.29906 -13.81509 -13.56437 -13.23932 -12.83703 -12.72901 -12.43316 -12.35700 -12.33636 -12.07481 -11.92633 -11.78902 -11.30190 -11.09996 -11.06815 -10.97484 -10.84595 -10.68831 -10.61307 -10.49780 -10.39967 -10.34393 -10.01218 -9.98144 -9.58128 -9.17539 -8.47431 -8.40878 -8.22018 -7.98868 -7.69318 -6.07358 -4.11410 1.87284 1.92345 3.26148 3.33633 3.35449 4.18198 4.29744 4.39844 4.65922 4.77492 4.87973 5.06292 5.24113 5.28013 5.29921 5.33119 5.35614 5.39842 5.48522 5.55812 5.57203 5.68569 5.72765 5.76385 5.87444 5.90240 5.97054 6.02635 6.03395 6.06418 6.13730 6.20084 6.22604 6.27961 6.31791 6.43518 6.44745 6.50725 6.55332 6.61854 6.74276 6.93061 6.98343 7.15919 7.22235 7.44905 7.46810 7.53904 7.58316 7.90944 8.00634 8.22093 8.29854 8.94286 9.53097 11.03099 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.008664 B = 0.005953 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3231.069235 B = 4702.378107 C = 7199.364851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.053 0.947 9 C 0.030 3.970 10 C 0.127 3.873 11 H 0.040 0.960 12 N -0.675 5.675 13 C 0.087 3.913 14 H 0.038 0.962 15 C -0.100 4.100 16 C 0.067 3.933 17 N -0.526 5.526 18 C 0.042 3.958 19 C -0.120 4.120 20 C -0.119 4.119 21 C 0.068 3.932 22 H 0.066 0.934 23 C -0.105 4.105 24 C -0.046 4.046 25 C -0.086 4.086 26 C -0.130 4.130 27 C -0.138 4.138 28 C -0.126 4.126 29 C -0.126 4.126 30 H 0.261 0.739 31 H 0.027 0.973 32 H 0.022 0.978 33 H 0.357 0.643 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.125 0.875 47 H 0.111 0.889 48 H 0.110 0.890 49 H 0.112 0.888 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.736 -12.861 -6.146 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.563 4.563 8 H 0.071 0.929 9 C -0.008 4.008 10 C 0.017 3.983 11 H 0.058 0.942 12 N -0.309 5.309 13 C -0.023 4.023 14 H 0.056 0.944 15 C -0.139 4.139 16 C -0.061 4.061 17 N -0.251 5.251 18 C -0.086 4.086 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.040 4.040 22 H 0.084 0.916 23 C -0.143 4.143 24 C -0.046 4.046 25 C -0.104 4.104 26 C -0.149 4.149 27 C -0.156 4.156 28 C -0.144 4.144 29 C -0.145 4.145 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.179 0.821 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.143 0.857 47 H 0.129 0.871 48 H 0.128 0.872 49 H 0.130 0.870 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.723 -13.542 -6.203 16.778 hybrid contribution 0.007 1.866 0.362 1.901 sum 7.730 -11.676 -5.841 15.172 Atomic orbital electron populations 1.69967 1.06041 1.26692 1.49995 1.24972 0.94762 0.99111 0.95092 0.86641 0.79837 0.83662 0.78134 1.20600 1.21246 1.19969 1.21116 0.92660 0.90920 1.51584 0.92895 1.19237 0.93613 0.89830 0.98078 1.20708 0.95230 0.92362 0.89962 0.94193 1.60503 1.16023 1.25214 1.29208 1.21595 0.89591 0.94407 0.96741 0.94384 1.21592 1.00951 0.95403 0.95919 1.21849 0.93230 0.98273 0.92777 1.63916 1.46430 1.09122 1.05669 1.22771 0.97862 0.99188 0.88774 1.22666 0.99644 0.95707 0.97776 1.22356 1.00242 0.97578 0.95575 1.22320 0.99008 0.88176 0.94482 0.91625 1.21680 0.98715 1.00149 0.93793 1.20169 0.96267 0.95628 0.92581 1.20989 0.95762 0.94570 0.99116 1.21095 1.00222 0.96400 0.97136 1.20943 1.01313 1.00064 0.93320 1.20957 0.99043 0.96364 0.98074 1.21037 1.00509 0.95509 0.97422 0.92902 0.95495 0.96015 0.82056 0.92626 0.91017 0.93155 0.92328 0.90911 0.94431 0.91420 0.91878 0.91383 0.91342 0.91564 0.91140 0.85706 0.87097 0.87213 0.87040 0.86801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.78 8.12 -34.44 -0.28 -14.06 16 8 H 0.05 1.35 7.49 -52.48 -0.39 0.95 16 9 C 0.03 0.73 4.55 -27.88 -0.13 0.60 16 10 C 0.13 2.49 2.19 -68.86 -0.15 2.34 16 11 H 0.04 0.82 7.28 -51.93 -0.38 0.44 16 12 N -0.67 -11.82 4.33 -100.69 -0.44 -12.25 16 13 C 0.09 1.34 2.79 -67.46 -0.19 1.15 16 14 H 0.04 0.63 7.41 -51.93 -0.39 0.24 16 15 C -0.10 -1.45 5.25 -26.54 -0.14 -1.59 16 16 C 0.07 0.93 5.72 -4.21 -0.02 0.90 16 17 N -0.53 -6.97 4.85 -224.55 -1.09 -8.06 16 18 C 0.04 0.49 6.71 -2.56 -0.02 0.47 16 19 C -0.12 -1.24 7.08 -23.98 -0.17 -1.41 16 20 C -0.12 -1.37 6.73 -25.01 -0.17 -1.54 16 21 C 0.07 0.92 2.38 -66.95 -0.16 0.76 16 22 H 0.07 1.01 7.37 -51.93 -0.38 0.63 16 23 C -0.11 -1.46 5.03 -26.77 -0.13 -1.60 16 24 C -0.05 -0.82 2.88 -104.63 -0.30 -1.12 16 25 C -0.09 -1.45 7.95 -39.58 -0.31 -1.77 16 26 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 27 C -0.14 -1.95 10.05 -39.59 -0.40 -2.35 16 28 C -0.13 -1.85 10.05 -39.59 -0.40 -2.25 16 29 C -0.13 -2.09 9.65 -39.58 -0.38 -2.48 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.36 6.89 6.75 -39.29 -0.27 6.63 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.12 5.41 -51.93 -0.28 0.84 16 36 H 0.05 0.77 6.62 -51.93 -0.34 0.43 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.76 8.00 -51.93 -0.42 0.34 16 44 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.13 2.20 7.12 -52.48 -0.37 1.82 16 47 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 48 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 49 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 50 H 0.11 1.81 8.04 -52.48 -0.42 1.38 16 LS Contribution 379.35 15.07 5.72 5.72 Total: -1.00 -27.57 379.35 -12.63 -40.20 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -8.69 Total: 8.28 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -3.85 Total: -24.65 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -0.79 Total: -45.42 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -27.57 -12.63 -40.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090664781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.330 kcal (2) G-P(sol) polarization free energy of solvation -27.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds