Wall clock time and date at job start Tue Mar 31 2020 10:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00433 * 2 1 4 4 H 1.48501 * 109.47244 * 270.00166 * 3 2 1 5 5 H 1.48500 * 109.47386 * 30.00106 * 3 2 1 6 6 H 1.48502 * 109.47197 * 150.00026 * 3 2 1 7 7 C 1.37886 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99995 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46888 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47173 * 54.99798 * 10 9 7 12 12 N 1.46906 * 109.46945 * 294.99893 * 10 9 7 13 13 C 1.46902 * 110.99573 * 155.00126 * 12 10 9 14 14 H 1.08996 * 109.25028 * 325.00078 * 13 12 10 15 15 C 1.52821 * 109.24884 * 84.45893 * 13 12 10 16 16 C 1.53549 * 110.74481 * 66.50792 * 15 13 12 17 17 N 1.45666 * 107.78323 * 57.39620 * 16 15 13 18 18 C 1.47090 * 116.53588 * 177.32256 * 17 16 15 19 19 C 1.55187 * 103.52337 * 162.42230 * 18 17 16 20 20 C 1.55980 * 105.04239 * 335.46548 * 19 18 17 21 21 C 1.48729 * 109.34110 * 294.44433 * 17 16 15 22 22 H 1.08998 * 110.34294 * 309.52106 * 21 17 16 23 23 C 1.52255 * 107.49788 * 69.80519 * 21 17 16 24 24 C 1.50702 * 109.47117 * 174.99987 * 10 9 7 25 25 C 1.38238 * 120.00031 * 79.72635 * 24 10 9 26 26 C 1.38234 * 120.00068 * 179.74483 * 25 24 10 27 27 C 1.38238 * 119.99572 * 0.52815 * 26 25 24 28 28 C 1.38224 * 120.00313 * 359.74541 * 27 26 25 29 29 C 1.38226 * 120.00097 * 259.99915 * 24 10 9 30 30 H 0.97007 * 119.99674 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47275 * 60.00029 * 9 7 2 32 32 H 1.08998 * 109.47332 * 300.00039 * 9 7 2 33 33 H 1.00896 * 111.00309 * 31.04538 * 12 10 9 34 34 H 1.09001 * 109.23234 * 186.85099 * 15 13 12 35 35 H 1.08997 * 109.23124 * 306.22499 * 15 13 12 36 36 H 1.08996 * 109.80078 * 297.82477 * 16 15 13 37 37 H 1.09001 * 109.85254 * 176.99399 * 16 15 13 38 38 H 1.09000 * 110.61369 * 280.93021 * 18 17 16 39 39 H 1.09004 * 110.61441 * 43.75717 * 18 17 16 40 40 H 1.09002 * 110.35447 * 94.86762 * 19 18 17 41 41 H 1.09008 * 110.34906 * 217.03580 * 19 18 17 42 42 H 1.08998 * 111.03799 * 239.64235 * 20 19 18 43 43 H 1.09004 * 110.38974 * 116.68640 * 20 19 18 44 44 H 1.09006 * 109.83352 * 177.56944 * 23 21 17 45 45 H 1.08997 * 109.89522 * 56.64211 * 23 21 17 46 46 H 1.08007 * 119.99704 * 359.97438 * 25 24 10 47 47 H 1.07997 * 119.99937 * 180.29764 * 26 25 24 48 48 H 1.08004 * 119.99558 * 179.76733 * 27 26 25 49 49 H 1.08000 * 120.00270 * 179.97438 * 28 27 26 50 50 H 1.08006 * 120.00123 * 0.02562 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9292 -3.5553 0.8423 12 7 3.0081 -3.6540 -1.2548 13 6 4.3092 -4.3143 -1.0841 14 1 4.6875 -4.1097 -0.0826 15 6 4.1355 -5.8226 -1.2586 16 6 3.7455 -6.1615 -2.7045 17 7 4.7812 -5.6309 -3.5807 18 6 4.6287 -5.9029 -5.0181 19 6 5.5707 -4.8659 -5.6856 20 6 5.6914 -3.7042 -4.6518 21 6 4.7805 -4.1457 -3.5011 22 1 3.7720 -3.7589 -3.6474 23 6 5.2981 -3.7609 -2.1219 24 6 1.4956 -4.9637 0.1244 25 6 0.8891 -5.5204 -0.9861 26 6 0.2061 -6.7170 -0.8736 27 6 0.1203 -7.3513 0.3516 28 6 0.7220 -6.7917 1.4632 29 6 1.4098 -5.5980 1.3495 30 1 -0.4850 0.8401 0.0004 31 1 0.6245 -2.5571 -0.8897 32 1 0.6239 -2.5567 0.8903 33 1 3.1226 -2.7137 -1.6023 34 1 5.0723 -6.3227 -1.0128 35 1 3.3540 -6.1742 -0.5850 36 1 2.7869 -5.7021 -2.9457 37 1 3.6775 -7.2426 -2.8258 38 1 4.9482 -6.9183 -5.2526 39 1 3.5966 -5.7447 -5.3313 40 1 6.5462 -5.3110 -5.8819 41 1 5.1309 -4.4951 -6.6115 42 1 5.3404 -2.7640 -5.0770 43 1 6.7211 -3.6075 -4.3076 44 1 5.3541 -2.6756 -2.0375 45 1 6.2846 -4.1956 -1.9614 46 1 0.9521 -5.0224 -1.9424 47 1 -0.2636 -7.1544 -1.7422 48 1 -0.4165 -8.2843 0.4403 49 1 0.6546 -7.2871 2.4205 50 1 1.8795 -5.1606 2.2182 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090664781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:15 Heat of formation + Delta-G solvation = 7.005384 kcal Electronic energy + Delta-G solvation = -27651.865513 eV Core-core repulsion = 24256.112804 eV Total energy + Delta-G solvation = -3395.752709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.17825 -40.03828 -37.72309 -35.59190 -34.19697 -33.26926 -31.65943 -31.07495 -30.47325 -29.35440 -27.58974 -26.12908 -24.08750 -23.45260 -23.24611 -22.23071 -21.56420 -21.12659 -20.04412 -18.58867 -17.47092 -16.95332 -16.67396 -16.46461 -16.37119 -15.97972 -15.78787 -15.60922 -15.11657 -14.76390 -14.59955 -14.23952 -14.06142 -13.82585 -13.64879 -13.53271 -13.38663 -13.36999 -13.06893 -12.89175 -12.68118 -12.44978 -12.29508 -12.13853 -12.05207 -11.97077 -11.85475 -11.71245 -11.49267 -11.33232 -11.23961 -11.20572 -10.99830 -10.58969 -9.67537 -9.42746 -9.29887 -9.07757 -8.20183 -6.31502 0.61568 0.67712 1.39131 1.39475 1.49840 2.38846 3.03547 3.10238 3.14902 3.44612 3.68498 3.78758 4.05520 4.13704 4.15653 4.17862 4.20160 4.27989 4.30873 4.41984 4.45765 4.52009 4.58725 4.68794 4.75773 4.78854 4.80648 4.86354 4.88212 4.89960 4.96940 5.04647 5.08988 5.11405 5.16612 5.21997 5.25375 5.25864 5.31916 5.38035 5.41942 5.46405 5.54259 5.70014 5.74573 5.81259 5.91412 6.09450 6.16878 6.27895 6.38674 6.45027 6.65985 6.83076 7.37507 8.90986 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.008664 B = 0.005953 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3231.069235 B = 4702.378107 C = 7199.364851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.044 3.956 10 C 0.143 3.857 11 H 0.027 0.973 12 N -0.667 5.667 13 C 0.087 3.913 14 H 0.026 0.974 15 C -0.092 4.092 16 C 0.074 3.926 17 N -0.527 5.527 18 C 0.039 3.961 19 C -0.113 4.113 20 C -0.118 4.118 21 C 0.069 3.931 22 H 0.040 0.960 23 C -0.099 4.099 24 C -0.066 4.066 25 C -0.097 4.097 26 C -0.131 4.131 27 C -0.131 4.131 28 C -0.124 4.124 29 C -0.142 4.142 30 H 0.262 0.738 31 H -0.004 1.004 32 H -0.013 1.013 33 H 0.344 0.656 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.032 0.968 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.030 0.970 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.082 0.918 46 H 0.109 0.891 47 H 0.135 0.865 48 H 0.145 0.855 49 H 0.141 0.859 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.121 -14.412 -6.831 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.077 0.923 9 C 0.006 3.994 10 C 0.033 3.967 11 H 0.044 0.956 12 N -0.300 5.300 13 C -0.023 4.023 14 H 0.044 0.956 15 C -0.130 4.130 16 C -0.054 4.054 17 N -0.252 5.252 18 C -0.089 4.089 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.039 4.039 22 H 0.058 0.942 23 C -0.137 4.137 24 C -0.067 4.067 25 C -0.115 4.115 26 C -0.149 4.149 27 C -0.149 4.149 28 C -0.142 4.142 29 C -0.160 4.160 30 H 0.071 0.929 31 H 0.015 0.985 32 H 0.005 0.995 33 H 0.165 0.835 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.049 0.951 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.127 0.873 47 H 0.153 0.847 48 H 0.163 0.837 49 H 0.158 0.842 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.127 -15.116 -6.892 18.955 hybrid contribution -0.473 2.266 0.594 2.390 sum 8.654 -12.850 -6.298 16.724 Atomic orbital electron populations 1.70108 1.07804 1.27628 1.51367 1.25861 0.95549 1.02969 0.94720 0.85533 0.78617 0.78922 0.78479 1.19667 1.21199 1.18954 1.21451 0.93050 0.91737 1.50663 0.92283 1.18987 0.93767 0.91813 0.94806 1.20349 0.94119 0.91897 0.90332 0.95553 1.60542 1.17306 1.24272 1.27846 1.21659 0.88709 0.95127 0.96758 0.95561 1.21490 1.00906 0.94328 0.96293 1.21730 0.92570 0.98659 0.92462 1.63944 1.45860 1.08698 1.06746 1.22879 0.97955 1.00437 0.87626 1.22662 1.00097 0.94744 0.97641 1.22361 1.00018 0.98208 0.95039 1.22255 0.98178 0.88525 0.94930 0.94188 1.21632 0.98630 0.99843 0.93644 1.20002 0.97611 0.95261 0.93831 1.20908 0.96791 0.95695 0.98097 1.21375 0.99390 0.95410 0.98676 1.21359 1.00241 1.00868 0.92408 1.21296 0.97787 0.95351 0.99738 1.21176 1.01405 0.96679 0.96788 0.92876 0.98528 0.99499 0.83546 0.91767 0.92152 0.95003 0.91320 0.89536 0.95144 0.90066 0.90720 0.91153 0.90573 0.92025 0.89980 0.87323 0.84733 0.83709 0.84151 0.86909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.53 -29.00 8.12 25.60 0.21 -28.80 16 8 H 0.06 3.09 7.49 -2.91 -0.02 3.06 16 9 C 0.04 2.28 4.55 29.85 0.14 2.42 16 10 C 0.14 5.95 2.19 44.17 0.10 6.05 16 11 H 0.03 1.15 7.28 -2.39 -0.02 1.14 16 12 N -0.67 -24.62 4.33 -472.46 -2.04 -26.66 16 13 C 0.09 2.75 2.79 45.08 0.13 2.88 16 14 H 0.03 0.89 7.41 -2.39 -0.02 0.87 16 15 C -0.09 -2.65 5.25 30.72 0.16 -2.49 16 16 C 0.07 2.02 5.72 86.72 0.50 2.51 16 17 N -0.53 -13.36 4.85 -864.33 -4.19 -17.55 16 18 C 0.04 0.83 6.71 87.02 0.58 1.41 16 19 C -0.11 -2.08 7.08 32.38 0.23 -1.85 16 20 C -0.12 -2.53 6.73 31.71 0.21 -2.32 16 21 C 0.07 1.84 2.38 44.40 0.11 1.94 16 22 H 0.04 1.27 7.37 -2.39 -0.02 1.25 16 23 C -0.10 -2.74 5.03 30.57 0.15 -2.59 16 24 C -0.07 -2.46 2.88 -19.87 -0.06 -2.52 16 25 C -0.10 -3.34 7.95 22.27 0.18 -3.16 16 26 C -0.13 -3.70 10.05 22.27 0.22 -3.48 16 27 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 28 C -0.12 -3.39 10.05 22.27 0.22 -3.17 16 29 C -0.14 -4.75 9.65 22.27 0.21 -4.53 16 30 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 31 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 33 H 0.34 14.05 6.75 -89.70 -0.61 13.45 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.90 5.41 -2.39 -0.01 1.88 16 36 H 0.03 0.99 6.62 -2.39 -0.02 0.98 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.08 1.52 8.00 -2.39 -0.02 1.50 16 44 H 0.06 1.75 8.04 -2.38 -0.02 1.73 16 45 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.11 4.04 7.12 -2.91 -0.02 4.02 16 47 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 48 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 49 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 50 H 0.11 3.68 8.04 -2.91 -0.02 3.66 16 Total: -1.00 -61.66 379.35 0.35 -61.31 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.30 Total: 32.95 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 3.98 Total: -39.92 kcal Atomic # 7 Polarization: -93.98 SS G_CDS: -5.95 Total: -99.93 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -61.66 0.35 -61.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090664781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.316 kcal (2) G-P(sol) polarization free energy of solvation -61.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds