Wall clock time and date at job start Tue Mar 31 2020 11:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46473 * 2 1 4 4 C 1.52995 * 109.47048 * 240.00062 * 2 1 3 5 5 C 1.50709 * 109.47345 * 60.00032 * 4 2 1 6 6 H 1.07999 * 119.99514 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99943 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99757 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00314 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47264 * 89.99613 * 9 7 5 11 11 H 1.48502 * 109.46938 * 209.99864 * 9 7 5 12 12 H 1.48506 * 109.46853 * 329.99705 * 9 7 5 13 13 C 1.52998 * 109.47129 * 119.99835 * 2 1 3 14 14 N 1.46901 * 109.47317 * 281.73518 * 13 2 1 15 15 C 1.46714 * 110.99760 * 51.41127 * 14 13 2 16 16 C 1.53375 * 108.27371 * 174.18427 * 15 14 13 17 17 N 1.46711 * 108.26455 * 293.25364 * 16 15 14 18 18 C 1.46892 * 111.00268 * 174.25379 * 17 16 15 19 19 C 1.53006 * 117.49939 * 359.27773 * 18 17 16 20 20 C 1.52998 * 117.50036 * 290.65467 * 18 17 16 21 21 C 1.39932 * 112.10443 * 49.48088 * 17 16 15 22 22 C 1.39226 * 117.92502 * 162.08142 * 21 17 16 23 23 C 1.38039 * 120.39964 * 179.65346 * 22 21 17 24 24 C 1.38262 * 120.02276 * 359.73628 * 23 22 21 25 25 C 1.38049 * 120.02006 * 0.62630 * 24 23 22 26 26 C 1.38948 * 122.49806 * 341.95063 * 21 17 16 27 27 H 1.09000 * 109.47506 * 322.86539 * 1 2 3 28 28 H 1.08998 * 109.47003 * 82.87002 * 1 2 3 29 29 H 1.09000 * 109.46910 * 202.86665 * 1 2 3 30 30 H 1.09005 * 109.46065 * 177.08561 * 3 2 1 31 31 H 1.09000 * 109.47124 * 297.08103 * 3 2 1 32 32 H 1.08993 * 109.47036 * 57.09026 * 3 2 1 33 33 H 1.09000 * 109.46807 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47585 * 300.00031 * 4 2 1 35 35 H 0.96996 * 120.00373 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.46615 * 161.73581 * 13 2 1 37 37 H 1.09004 * 109.46788 * 41.73546 * 13 2 1 38 38 H 1.08998 * 109.69977 * 54.48703 * 15 14 13 39 39 H 1.09005 * 109.73688 * 293.89637 * 15 14 13 40 40 H 1.09000 * 109.70295 * 173.56200 * 16 15 14 41 41 H 1.09008 * 109.73945 * 52.96931 * 16 15 14 42 42 H 1.09004 * 115.55016 * 144.98437 * 18 17 16 43 43 H 1.08995 * 117.49641 * 359.97438 * 19 18 17 44 44 H 1.09000 * 117.49663 * 145.02378 * 19 18 17 45 45 H 1.08996 * 117.50442 * 214.97950 * 20 18 17 46 46 H 1.08999 * 117.49963 * 359.97438 * 20 18 17 47 47 H 1.08001 * 119.79835 * 359.67758 * 22 21 17 48 48 H 1.08002 * 119.99029 * 179.97438 * 23 22 21 49 49 H 1.07994 * 119.99616 * 180.36683 * 24 23 22 50 50 H 1.07996 * 119.79933 * 179.76777 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4798 6 1 0.9164 0.8671 -2.3806 7 6 1.8712 -0.4816 -3.7320 8 7 1.4324 0.1381 -4.8058 9 14 2.9451 -2.0003 -3.9034 10 1 2.0865 -3.2111 -3.9494 11 1 3.7375 -1.9075 -5.1560 12 1 3.8651 -2.0897 -2.7411 13 6 2.0400 -0.7212 1.2492 14 7 1.9377 0.1754 2.4084 15 6 0.5897 0.7445 2.5155 16 6 0.5093 1.5487 3.8190 17 7 0.6151 0.6129 4.9439 18 6 0.6818 1.3324 6.2228 19 6 0.6498 2.8614 6.1757 20 6 1.9516 2.1336 6.5173 21 6 1.6995 -0.2601 4.8024 22 6 2.1492 -0.9304 5.9368 23 6 3.2107 -1.8090 5.8541 24 6 3.8309 -2.0322 4.6387 25 6 3.3973 -1.3668 3.5095 26 6 2.3292 -0.4768 3.5829 27 1 -0.3634 0.8192 0.6204 28 1 -0.3633 0.1276 -1.0197 29 1 -0.3633 -0.9469 0.3993 30 1 3.1287 1.4430 0.0523 31 1 1.7199 1.9411 -0.9150 32 1 1.6346 1.9712 0.8627 33 1 3.1300 -0.7208 -1.2494 34 1 1.6767 -1.7489 -1.2493 35 1 1.6667 -0.1932 -5.6868 36 1 3.0812 -1.0087 1.1031 37 1 1.4381 -1.6128 1.4252 38 1 -0.1477 -0.0581 2.5327 39 1 0.3987 1.4008 1.6663 40 1 -0.4437 2.0756 3.8675 41 1 1.3286 2.2666 3.8597 42 1 0.1886 0.8440 7.0633 43 1 0.5797 3.3333 5.1957 44 1 0.1354 3.3792 6.9853 45 1 2.2936 2.1727 7.5514 46 1 2.7376 2.1264 5.7622 47 1 1.6644 -0.7623 6.8871 48 1 3.5544 -2.3251 6.7383 49 1 4.6575 -2.7241 4.5734 50 1 3.8868 -1.5410 2.5628 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190282014.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:19 Heat of formation + Delta-G solvation = 91.095655 kcal Electronic energy + Delta-G solvation = -27572.277278 eV Core-core repulsion = 24180.170997 eV Total energy + Delta-G solvation = -3392.106281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.30454 -38.69477 -37.67849 -35.35586 -33.71058 -32.23051 -30.69476 -29.85467 -28.00513 -27.61328 -26.51102 -25.01044 -23.72749 -23.21960 -22.31836 -22.14719 -20.46555 -19.45073 -18.05179 -17.58553 -16.83886 -16.58164 -16.09109 -15.88857 -15.00459 -14.75132 -14.53027 -14.10199 -14.02907 -13.69243 -13.49654 -13.17732 -13.07911 -12.90888 -12.72066 -12.33547 -12.20807 -11.96711 -11.71982 -11.51599 -11.37315 -11.20585 -11.09144 -10.95452 -10.83240 -10.66820 -10.59632 -10.44843 -10.24548 -9.93044 -9.79868 -9.73155 -9.50587 -9.19950 -8.95518 -8.52469 -8.17021 -7.26438 -6.03172 -3.99750 1.43589 1.48757 3.30725 3.34118 3.38808 3.41878 3.50265 3.80199 4.10351 4.41567 4.45906 4.57461 4.60011 4.80624 4.84143 5.03487 5.14832 5.22137 5.29733 5.33409 5.37748 5.40480 5.43239 5.46412 5.53567 5.58497 5.68472 5.77907 5.80821 5.83077 5.86453 6.01067 6.03201 6.09248 6.15009 6.30898 6.34236 6.42742 6.53638 6.62693 6.72193 6.74829 6.83619 7.00452 7.07952 7.11009 7.17186 7.20262 7.28620 7.43493 7.50652 7.80771 8.55037 9.01576 9.59723 11.09735 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.020155 B = 0.003696 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.928437 B = 7573.543235 C = 8583.427377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.052 4.052 3 C -0.124 4.124 4 C -0.001 4.001 5 C -0.509 4.509 6 H 0.079 0.921 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.065 3.935 14 N -0.481 5.481 15 C 0.033 3.967 16 C 0.045 3.955 17 N -0.460 5.460 18 C 0.022 3.978 19 C -0.186 4.186 20 C -0.198 4.198 21 C 0.073 3.927 22 C -0.120 4.120 23 C -0.136 4.136 24 C -0.119 4.119 25 C -0.138 4.138 26 C 0.094 3.906 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.016 0.984 34 H 0.010 0.990 35 H 0.262 0.738 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.057 0.943 39 H 0.125 0.875 40 H 0.092 0.908 41 H 0.057 0.943 42 H 0.127 0.873 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.120 0.880 48 H 0.117 0.883 49 H 0.118 0.882 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.306 1.334 23.796 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.052 4.052 3 C -0.181 4.181 4 C -0.039 4.039 5 C -0.547 4.547 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.544 5.544 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.060 4.060 14 N -0.195 5.195 15 C -0.093 4.093 16 C -0.082 4.082 17 N -0.174 5.174 18 C -0.085 4.085 19 C -0.224 4.224 20 C -0.237 4.237 21 C -0.026 4.026 22 C -0.141 4.141 23 C -0.155 4.155 24 C -0.138 4.138 25 C -0.160 4.160 26 C -0.007 4.007 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.142 0.858 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.144 0.856 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.113 0.887 47 H 0.138 0.862 48 H 0.135 0.865 49 H 0.136 0.864 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.095 1.528 23.425 23.475 hybrid contribution 0.792 -1.074 -0.115 1.340 sum 0.887 0.454 23.310 23.331 Atomic orbital electron populations 1.22436 0.95389 0.99591 1.03603 1.20490 0.95157 0.96337 0.93254 1.21813 1.00322 0.95189 1.00808 1.19603 0.96074 0.95336 0.92884 1.21096 1.31642 1.13303 0.88630 0.90355 1.24999 0.95738 0.96727 0.96001 1.69901 1.46000 1.40598 0.97862 0.86859 0.81319 0.83976 0.77584 1.20450 1.21522 1.19092 1.22635 1.01739 0.92977 0.88639 1.58897 1.25032 1.33571 1.01964 1.23206 0.88491 0.99684 0.97938 1.22553 1.02217 0.94263 0.89145 1.58907 1.38025 1.18269 1.02169 1.22782 1.01657 0.91177 0.92905 1.23430 1.01166 0.93755 1.04002 1.23375 0.92147 1.05055 1.03078 1.18551 0.91411 0.99247 0.93403 1.20751 0.97970 0.98604 0.96754 1.20785 0.97337 0.99813 0.97596 1.20859 1.00310 1.00164 0.92498 1.21014 0.97680 0.97779 0.99500 1.18837 0.96148 0.95718 0.90031 0.93155 0.90185 0.94283 0.93698 0.91644 0.93685 0.96546 0.97198 0.92832 0.90327 0.94136 0.92482 0.85805 0.88994 0.92465 0.85573 0.87841 0.88055 0.88304 0.88666 0.86226 0.86511 0.86362 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 7.33 37.16 0.27 -2.45 16 2 C -0.05 -0.97 0.53 -154.51 -0.08 -1.05 16 3 C -0.12 -2.27 7.65 37.16 0.28 -1.98 16 4 C 0.00 -0.03 3.03 -27.88 -0.08 -0.11 16 5 C -0.51 -13.68 7.84 -34.44 -0.27 -13.95 16 6 H 0.08 2.24 6.17 -52.49 -0.32 1.92 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 9 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 13 C 0.06 1.07 3.79 -3.82 -0.01 1.06 16 14 N -0.48 -7.23 3.91 -170.83 -0.67 -7.90 16 15 C 0.03 0.45 3.40 -3.73 -0.01 0.43 16 16 C 0.04 0.53 4.35 -3.73 -0.02 0.51 16 17 N -0.46 -5.55 4.86 -163.30 -0.79 -6.34 16 18 C 0.02 0.21 4.86 -67.72 -0.33 -0.12 16 19 C -0.19 -1.52 9.45 -26.73 -0.25 -1.77 16 20 C -0.20 -1.78 9.08 -26.73 -0.24 -2.02 16 21 C 0.07 0.98 5.21 -83.53 -0.43 0.55 16 22 C -0.12 -1.42 8.64 -39.29 -0.34 -1.75 16 23 C -0.14 -1.52 10.04 -39.65 -0.40 -1.92 16 24 C -0.12 -1.43 10.04 -39.64 -0.40 -1.82 16 25 C -0.14 -1.92 9.05 -39.29 -0.36 -2.28 16 26 C 0.09 1.37 5.78 -83.53 -0.48 0.89 16 27 H 0.05 0.77 4.78 -51.93 -0.25 0.52 16 28 H 0.08 1.64 6.23 -51.93 -0.32 1.32 16 29 H 0.04 0.66 7.59 -51.93 -0.39 0.26 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 1.33 6.53 -51.93 -0.34 1.00 16 32 H 0.04 0.72 5.07 -51.93 -0.26 0.45 16 33 H 0.02 0.38 7.19 -51.93 -0.37 0.01 16 34 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.08 1.31 6.17 -51.93 -0.32 0.98 16 37 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 38 H 0.06 0.83 7.54 -51.93 -0.39 0.44 16 39 H 0.12 1.71 3.08 -51.93 -0.16 1.55 16 40 H 0.09 0.93 7.78 -51.93 -0.40 0.52 16 41 H 0.06 0.70 6.65 -51.92 -0.35 0.35 16 42 H 0.13 1.06 7.91 -51.93 -0.41 0.65 16 43 H 0.10 0.88 5.85 -51.93 -0.30 0.58 16 44 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.09 1.06 7.92 -51.93 -0.41 0.64 16 47 H 0.12 1.21 6.87 -52.49 -0.36 0.85 16 48 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 49 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 50 H 0.13 1.75 6.10 -52.49 -0.32 1.43 16 LS Contribution 360.02 15.07 5.43 5.43 Total: -1.00 -29.56 360.02 -10.95 -40.51 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.77 Total: 4.05 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: -3.25 Total: -26.01 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: -0.69 Total: -40.79 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.56 -10.95 -40.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190282014.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.605 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds