Wall clock time and date at job start Tue Mar 31 2020 10:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00140 * 2 1 4 4 H 1.48503 * 109.47004 * 270.00095 * 3 2 1 5 5 H 1.48490 * 109.47214 * 30.00363 * 3 2 1 6 6 H 1.48502 * 109.46870 * 150.00506 * 3 2 1 7 7 C 1.37883 * 119.99521 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99847 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99585 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46948 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47242 * 55.00336 * 10 9 7 12 12 N 1.46895 * 109.47033 * 295.00075 * 10 9 7 13 13 C 1.46905 * 110.99826 * 155.00157 * 12 10 9 14 14 H 1.08999 * 109.24189 * 324.99338 * 13 12 10 15 15 C 1.52822 * 109.25299 * 84.45378 * 13 12 10 16 16 C 1.53636 * 110.64345 * 174.16096 * 15 13 12 17 17 N 1.45527 * 107.86054 * 302.86982 * 16 15 13 18 18 C 1.46335 * 117.22381 * 185.56003 * 17 16 15 19 19 C 1.54807 * 105.96177 * 208.04630 * 18 17 16 20 20 C 1.55325 * 104.98868 * 3.64997 * 19 18 17 21 21 C 1.48659 * 109.72167 * 65.32015 * 17 16 15 22 22 H 1.09003 * 111.11216 * 52.55050 * 21 17 16 23 23 C 1.52368 * 107.31172 * 290.44741 * 21 17 16 24 24 C 1.50702 * 109.47066 * 174.99737 * 10 9 7 25 25 C 1.38234 * 120.00271 * 259.99910 * 24 10 9 26 26 C 1.38230 * 119.99880 * 179.97438 * 25 24 10 27 27 C 1.38235 * 120.00326 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99814 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99485 * 79.98038 * 24 10 9 30 30 H 0.97005 * 119.99513 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47228 * 59.99966 * 9 7 2 32 32 H 1.09000 * 109.47603 * 299.99822 * 9 7 2 33 33 H 1.00894 * 110.99992 * 278.94967 * 12 10 9 34 34 H 1.08996 * 109.24027 * 294.46928 * 15 13 12 35 35 H 1.09002 * 109.23604 * 53.86270 * 15 13 12 36 36 H 1.09000 * 109.77848 * 62.46047 * 16 15 13 37 37 H 1.09000 * 109.78054 * 183.27646 * 16 15 13 38 38 H 1.08991 * 110.15681 * 327.17281 * 18 17 16 39 39 H 1.09004 * 110.15008 * 88.85895 * 18 17 16 40 40 H 1.09001 * 110.33193 * 122.52447 * 19 18 17 41 41 H 1.08999 * 110.33966 * 244.77095 * 19 18 17 42 42 H 1.09005 * 110.90930 * 140.39111 * 20 19 18 43 43 H 1.08995 * 110.91170 * 263.96015 * 20 19 18 44 44 H 1.08995 * 109.85752 * 303.32776 * 23 21 17 45 45 H 1.09002 * 109.79991 * 182.38264 * 23 21 17 46 46 H 1.08001 * 119.99769 * 359.97438 * 25 24 10 47 47 H 1.08000 * 120.00376 * 180.02562 * 26 25 24 48 48 H 1.08000 * 120.00616 * 179.72578 * 27 26 25 49 49 H 1.08001 * 120.00299 * 179.97438 * 28 27 26 50 50 H 1.07997 * 120.00489 * 0.02562 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 1 3.5865 -3.1760 -0.8425 12 7 3.6332 -3.2932 1.2545 13 6 3.5543 -4.7502 1.0842 14 1 3.1874 -4.9755 0.0828 15 6 4.9474 -5.3540 1.2581 16 6 4.8798 -6.8887 1.2307 17 7 3.9653 -7.3140 2.2798 18 6 3.8431 -8.7526 2.5187 19 6 2.4155 -8.9718 3.0758 20 6 1.7473 -7.5703 3.0314 21 6 2.5897 -6.8451 1.9667 22 1 2.2919 -7.1449 0.9620 23 6 2.5810 -5.3294 2.1223 24 6 5.5233 -2.6386 -0.1255 25 6 6.1150 -2.8818 -1.3509 26 6 7.4926 -2.8830 -1.4651 27 6 8.2785 -2.6405 -0.3540 28 6 7.6867 -2.3962 0.8711 29 6 6.3091 -2.3968 0.9858 30 1 -0.4850 0.8401 0.0004 31 1 3.8751 -0.6806 0.8888 32 1 3.8745 -0.6802 -0.8911 33 1 4.2674 -3.0502 2.0006 34 1 5.5922 -5.0082 0.4503 35 1 5.3628 -5.0297 2.2123 36 1 4.5111 -7.2244 0.2614 37 1 5.8704 -7.3049 1.4137 38 1 3.9701 -9.3004 1.5850 39 1 4.5857 -9.0765 3.2478 40 1 1.8670 -9.6731 2.4469 41 1 2.4611 -9.3374 4.1016 42 1 0.7058 -7.6456 2.7184 43 1 1.8261 -7.0710 3.9970 44 1 2.9070 -5.0584 3.1265 45 1 1.5768 -4.9455 1.9424 46 1 5.5009 -3.0709 -2.2190 47 1 7.9549 -3.0726 -2.4225 48 1 9.3549 -2.6458 -0.4423 49 1 8.3007 -2.2071 1.7393 50 1 5.8468 -2.2069 1.9431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246581980.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:19 Heat of formation + Delta-G solvation = 28.955419 kcal Electronic energy + Delta-G solvation = -27135.719855 eV Core-core repulsion = 23740.918971 eV Total energy + Delta-G solvation = -3394.800884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.10424 -39.20327 -36.58778 -34.15626 -32.52906 -32.02482 -30.75423 -30.08383 -29.36055 -28.28207 -26.41068 -24.32220 -22.73882 -22.43133 -21.63845 -21.13740 -20.66667 -20.00360 -19.33745 -17.11975 -16.33570 -15.92501 -15.63959 -15.17356 -15.05907 -14.79565 -14.40765 -14.17488 -13.81751 -13.74036 -13.30734 -13.11750 -12.81558 -12.74145 -12.61611 -12.50818 -12.31921 -12.26678 -11.57407 -11.48205 -11.24233 -11.18393 -11.11262 -11.03889 -10.87782 -10.68222 -10.60145 -10.48767 -10.29082 -10.03274 -9.99335 -9.62480 -9.03326 -8.71132 -8.40916 -8.34465 -8.26663 -7.68319 -5.89672 -3.83581 1.60600 1.61427 3.37754 3.45660 3.49596 3.95462 4.02522 4.45000 4.56437 4.67469 4.78206 4.87835 5.02382 5.08416 5.10836 5.16180 5.21634 5.26750 5.35397 5.37201 5.44401 5.51108 5.54394 5.58894 5.64423 5.73570 5.77166 5.79166 5.83438 5.86637 5.95463 6.02896 6.04900 6.14466 6.16732 6.22758 6.28045 6.30435 6.52592 6.59371 6.65626 6.68807 6.72176 6.88208 7.02211 7.16495 7.22861 7.27897 7.32101 7.80761 7.91427 8.07588 8.72156 9.21513 9.73388 11.24222 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.010334 B = 0.004796 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.757434 B = 5836.865201 C = 8093.880201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.063 3.937 3 Si 0.871 3.129 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.488 4.488 8 H 0.078 0.922 9 C 0.004 3.996 10 C 0.139 3.861 11 H 0.078 0.922 12 N -0.651 5.651 13 C 0.091 3.909 14 H 0.068 0.932 15 C -0.141 4.141 16 C 0.067 3.933 17 N -0.537 5.537 18 C 0.050 3.950 19 C -0.128 4.128 20 C -0.115 4.115 21 C 0.068 3.932 22 H 0.051 0.949 23 C -0.089 4.089 24 C -0.091 4.091 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.136 4.136 28 C -0.118 4.118 29 C -0.119 4.119 30 H 0.259 0.741 31 H 0.018 0.982 32 H 0.012 0.988 33 H 0.333 0.667 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.029 0.971 37 H 0.067 0.933 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.119 0.881 47 H 0.115 0.885 48 H 0.114 0.886 49 H 0.116 0.884 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.468 -15.349 3.180 20.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.136 4.136 3 Si 0.700 3.300 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.526 4.526 8 H 0.096 0.904 9 C -0.034 4.034 10 C 0.029 3.971 11 H 0.096 0.904 12 N -0.280 5.280 13 C -0.020 4.020 14 H 0.086 0.914 15 C -0.181 4.181 16 C -0.062 4.062 17 N -0.262 5.262 18 C -0.078 4.078 19 C -0.166 4.166 20 C -0.153 4.153 21 C -0.040 4.040 22 H 0.069 0.931 23 C -0.127 4.127 24 C -0.092 4.092 25 C -0.138 4.138 26 C -0.138 4.138 27 C -0.154 4.154 28 C -0.136 4.136 29 C -0.137 4.137 30 H 0.069 0.931 31 H 0.036 0.964 32 H 0.030 0.970 33 H 0.153 0.847 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.047 0.953 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.137 0.863 47 H 0.133 0.867 48 H 0.132 0.868 49 H 0.134 0.866 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.843 -14.897 3.520 19.354 hybrid contribution 1.313 0.360 -0.887 1.624 sum 13.155 -14.538 2.633 19.782 Atomic orbital electron populations 1.69909 1.06122 1.26368 1.52408 1.24970 0.94633 0.98648 0.95395 0.86916 0.80426 0.84472 0.78225 1.20670 1.21622 1.19239 1.20980 0.88728 0.94382 1.48516 0.90378 1.19581 0.97819 0.89780 0.96183 1.20771 0.85597 0.98754 0.91987 0.90367 1.60673 1.55425 1.05479 1.06395 1.21672 0.93129 0.88176 0.98980 0.91369 1.22464 0.99251 0.94095 1.02258 1.21853 0.96131 0.96309 0.91871 1.62784 1.07421 1.11931 1.44107 1.22472 0.97444 0.88588 0.99318 1.22626 0.95035 0.97653 1.01289 1.22364 0.98371 0.94848 0.99744 1.22621 0.88038 0.96223 0.97169 0.93056 1.21453 1.00273 0.91280 0.99734 1.21198 0.98781 0.96043 0.93223 1.21088 0.94584 1.00712 0.97376 1.21082 0.93957 1.00553 0.98256 1.21011 0.99253 1.01973 0.93213 1.21056 0.94812 1.00366 0.97385 1.20970 0.93501 1.00496 0.98731 0.93081 0.96417 0.96959 0.84659 0.91500 0.91496 0.95285 0.91491 0.94829 0.90889 0.91752 0.91196 0.91066 0.90465 0.91062 0.90419 0.86256 0.86681 0.86821 0.86627 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.17 13.96 55.43 0.77 -27.39 16 2 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 3 Si 0.87 22.04 27.47 -169.99 -4.67 17.37 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 6 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 7 C -0.49 -13.64 9.39 -34.44 -0.32 -13.96 16 8 H 0.08 2.37 7.99 -52.49 -0.42 1.95 16 9 C 0.00 0.10 3.70 -27.88 -0.10 -0.01 16 10 C 0.14 2.63 2.17 -68.86 -0.15 2.48 16 11 H 0.08 1.54 7.28 -51.93 -0.38 1.16 16 12 N -0.65 -11.57 5.75 -100.70 -0.58 -12.15 16 13 C 0.09 1.39 2.52 -67.47 -0.17 1.22 16 14 H 0.07 1.12 7.41 -51.93 -0.39 0.74 16 15 C -0.14 -1.88 4.58 -26.49 -0.12 -2.00 16 16 C 0.07 0.82 5.85 -4.23 -0.02 0.79 16 17 N -0.54 -6.54 4.65 -225.06 -1.05 -7.59 16 18 C 0.05 0.51 6.86 -3.18 -0.02 0.49 16 19 C -0.13 -1.19 6.99 -24.55 -0.17 -1.36 16 20 C -0.12 -1.24 6.61 -25.02 -0.17 -1.41 16 21 C 0.07 0.85 2.63 -66.58 -0.18 0.67 16 22 H 0.05 0.67 8.06 -51.93 -0.42 0.26 16 23 C -0.09 -1.30 5.27 -26.72 -0.14 -1.44 16 24 C -0.09 -1.47 2.93 -104.62 -0.31 -1.77 16 25 C -0.12 -1.78 9.64 -39.59 -0.38 -2.16 16 26 C -0.12 -1.57 10.05 -39.59 -0.40 -1.97 16 27 C -0.14 -1.70 10.05 -39.58 -0.40 -2.10 16 28 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 29 C -0.12 -1.77 8.51 -39.58 -0.34 -2.11 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 32 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 33 H 0.33 5.56 6.00 -39.30 -0.24 5.33 16 34 H 0.07 0.94 6.28 -51.93 -0.33 0.61 16 35 H 0.07 0.92 8.00 -51.93 -0.42 0.51 16 36 H 0.03 0.36 8.05 -51.93 -0.42 -0.06 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.33 8.04 -51.93 -0.42 -0.08 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.12 1.69 8.04 -52.49 -0.42 1.27 16 47 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 48 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 49 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 50 H 0.12 1.75 6.51 -52.49 -0.34 1.41 16 LS Contribution 379.84 15.07 5.72 5.72 Total: -1.00 -30.36 379.84 -12.44 -42.80 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -8.76 Total: 6.07 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -3.88 Total: -24.84 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.85 Total: -47.13 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.36 -12.44 -42.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246581980.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.757 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds