Wall clock time and date at job start Tue Mar 31 2020 10:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00140 * 2 1 4 4 H 1.48503 * 109.47004 * 270.00095 * 3 2 1 5 5 H 1.48490 * 109.47214 * 30.00363 * 3 2 1 6 6 H 1.48502 * 109.46870 * 150.00506 * 3 2 1 7 7 C 1.37883 * 119.99521 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99847 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99585 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46948 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47242 * 55.00336 * 10 9 7 12 12 N 1.46895 * 109.47033 * 295.00075 * 10 9 7 13 13 C 1.46905 * 110.99826 * 155.00157 * 12 10 9 14 14 H 1.08999 * 109.24189 * 324.99338 * 13 12 10 15 15 C 1.52822 * 109.25299 * 84.45378 * 13 12 10 16 16 C 1.53636 * 110.64345 * 174.16096 * 15 13 12 17 17 N 1.45527 * 107.86054 * 302.86982 * 16 15 13 18 18 C 1.46335 * 117.22381 * 185.56003 * 17 16 15 19 19 C 1.54807 * 105.96177 * 208.04630 * 18 17 16 20 20 C 1.55325 * 104.98868 * 3.64997 * 19 18 17 21 21 C 1.48659 * 109.72167 * 65.32015 * 17 16 15 22 22 H 1.09003 * 111.11216 * 52.55050 * 21 17 16 23 23 C 1.52368 * 107.31172 * 290.44741 * 21 17 16 24 24 C 1.50702 * 109.47066 * 174.99737 * 10 9 7 25 25 C 1.38234 * 120.00271 * 259.99910 * 24 10 9 26 26 C 1.38230 * 119.99880 * 179.97438 * 25 24 10 27 27 C 1.38235 * 120.00326 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99814 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99485 * 79.98038 * 24 10 9 30 30 H 0.97005 * 119.99513 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47228 * 59.99966 * 9 7 2 32 32 H 1.09000 * 109.47603 * 299.99822 * 9 7 2 33 33 H 1.00894 * 110.99992 * 278.94967 * 12 10 9 34 34 H 1.08996 * 109.24027 * 294.46928 * 15 13 12 35 35 H 1.09002 * 109.23604 * 53.86270 * 15 13 12 36 36 H 1.09000 * 109.77848 * 62.46047 * 16 15 13 37 37 H 1.09000 * 109.78054 * 183.27646 * 16 15 13 38 38 H 1.08991 * 110.15681 * 327.17281 * 18 17 16 39 39 H 1.09004 * 110.15008 * 88.85895 * 18 17 16 40 40 H 1.09001 * 110.33193 * 122.52447 * 19 18 17 41 41 H 1.08999 * 110.33966 * 244.77095 * 19 18 17 42 42 H 1.09005 * 110.90930 * 140.39111 * 20 19 18 43 43 H 1.08995 * 110.91170 * 263.96015 * 20 19 18 44 44 H 1.08995 * 109.85752 * 303.32776 * 23 21 17 45 45 H 1.09002 * 109.79991 * 182.38264 * 23 21 17 46 46 H 1.08001 * 119.99769 * 359.97438 * 25 24 10 47 47 H 1.08000 * 120.00376 * 180.02562 * 26 25 24 48 48 H 1.08000 * 120.00616 * 179.72578 * 27 26 25 49 49 H 1.08001 * 120.00299 * 179.97438 * 28 27 26 50 50 H 1.07997 * 120.00489 * 0.02562 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 1 3.5865 -3.1760 -0.8425 12 7 3.6332 -3.2932 1.2545 13 6 3.5543 -4.7502 1.0842 14 1 3.1874 -4.9755 0.0828 15 6 4.9474 -5.3540 1.2581 16 6 4.8798 -6.8887 1.2307 17 7 3.9653 -7.3140 2.2798 18 6 3.8431 -8.7526 2.5187 19 6 2.4155 -8.9718 3.0758 20 6 1.7473 -7.5703 3.0314 21 6 2.5897 -6.8451 1.9667 22 1 2.2919 -7.1449 0.9620 23 6 2.5810 -5.3294 2.1223 24 6 5.5233 -2.6386 -0.1255 25 6 6.1150 -2.8818 -1.3509 26 6 7.4926 -2.8830 -1.4651 27 6 8.2785 -2.6405 -0.3540 28 6 7.6867 -2.3962 0.8711 29 6 6.3091 -2.3968 0.9858 30 1 -0.4850 0.8401 0.0004 31 1 3.8751 -0.6806 0.8888 32 1 3.8745 -0.6802 -0.8911 33 1 4.2674 -3.0502 2.0006 34 1 5.5922 -5.0082 0.4503 35 1 5.3628 -5.0297 2.2123 36 1 4.5111 -7.2244 0.2614 37 1 5.8704 -7.3049 1.4137 38 1 3.9701 -9.3004 1.5850 39 1 4.5857 -9.0765 3.2478 40 1 1.8670 -9.6731 2.4469 41 1 2.4611 -9.3374 4.1016 42 1 0.7058 -7.6456 2.7184 43 1 1.8261 -7.0710 3.9970 44 1 2.9070 -5.0584 3.1265 45 1 1.5768 -4.9455 1.9424 46 1 5.5009 -3.0709 -2.2190 47 1 7.9549 -3.0726 -2.4225 48 1 9.3549 -2.6458 -0.4423 49 1 8.3007 -2.2071 1.7393 50 1 5.8468 -2.2069 1.9431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246581980.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:18 Heat of formation + Delta-G solvation = 11.241379 kcal Electronic energy + Delta-G solvation = -27136.487994 eV Core-core repulsion = 23740.918971 eV Total energy + Delta-G solvation = -3395.569022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.21364 -40.28921 -37.81030 -35.58075 -34.31363 -33.28030 -31.83310 -31.21654 -30.94344 -29.46044 -27.59164 -25.91268 -23.84943 -23.55330 -23.16197 -22.12966 -21.65158 -21.32643 -20.60593 -18.94515 -17.79358 -16.93181 -16.65898 -16.48782 -16.27500 -16.04561 -15.84129 -15.33033 -15.26507 -14.93382 -14.64511 -14.34141 -14.17714 -14.03862 -13.92830 -13.68396 -13.55685 -13.33828 -13.24648 -12.87437 -12.44783 -12.40968 -12.32617 -12.12916 -12.02359 -11.96543 -11.93955 -11.78638 -11.63695 -11.45692 -11.40545 -11.29614 -11.06013 -10.67680 -9.77503 -9.51129 -9.26986 -9.05013 -8.17473 -6.15935 0.51244 0.54542 1.35846 1.37945 1.49137 2.41694 2.93148 3.00701 3.14607 3.30676 3.69358 3.75531 3.89572 3.92319 4.04254 4.05192 4.18903 4.20594 4.26193 4.32493 4.33020 4.42951 4.49342 4.54075 4.56048 4.68239 4.70356 4.76766 4.80243 4.86851 4.91172 4.92517 5.02218 5.05019 5.07927 5.13137 5.17313 5.19837 5.22982 5.32662 5.35659 5.41117 5.45045 5.61547 5.65445 5.73847 5.76029 6.02512 6.17286 6.33689 6.35183 6.49102 6.69650 6.91120 7.44389 8.99829 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.010334 B = 0.004796 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.757434 B = 5836.865201 C = 8093.880201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.001 3.999 3 Si 0.941 3.059 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.253 1.253 7 C -0.486 4.486 8 H 0.036 0.964 9 C 0.010 3.990 10 C 0.152 3.848 11 H 0.058 0.942 12 N -0.671 5.671 13 C 0.097 3.903 14 H 0.048 0.952 15 C -0.124 4.124 16 C 0.070 3.930 17 N -0.544 5.544 18 C 0.047 3.953 19 C -0.121 4.121 20 C -0.115 4.115 21 C 0.069 3.931 22 H 0.044 0.956 23 C -0.083 4.083 24 C -0.106 4.106 25 C -0.133 4.133 26 C -0.119 4.119 27 C -0.129 4.129 28 C -0.117 4.117 29 C -0.128 4.128 30 H 0.261 0.739 31 H 0.015 0.985 32 H 0.011 0.989 33 H 0.339 0.661 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.026 0.974 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.050 0.950 46 H 0.117 0.883 47 H 0.141 0.859 48 H 0.147 0.853 49 H 0.142 0.858 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.994 -16.058 3.644 22.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.194 4.194 3 Si 0.765 3.235 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.177 1.177 7 C -0.525 4.525 8 H 0.055 0.945 9 C -0.028 4.028 10 C 0.041 3.959 11 H 0.076 0.924 12 N -0.301 5.301 13 C -0.013 4.013 14 H 0.066 0.934 15 C -0.164 4.164 16 C -0.059 4.059 17 N -0.269 5.269 18 C -0.080 4.080 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.039 4.039 22 H 0.062 0.938 23 C -0.121 4.121 24 C -0.108 4.108 25 C -0.152 4.152 26 C -0.137 4.137 27 C -0.147 4.147 28 C -0.135 4.135 29 C -0.147 4.147 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.159 0.841 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.135 0.865 47 H 0.159 0.841 48 H 0.164 0.836 49 H 0.159 0.841 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.390 -15.630 3.984 22.294 hybrid contribution 0.205 0.510 -1.045 1.181 sum 15.595 -15.119 2.939 21.918 Atomic orbital electron populations 1.70073 1.08038 1.27420 1.54311 1.25860 0.95449 1.02755 0.95313 0.85805 0.79431 0.79462 0.78754 1.19665 1.21343 1.17676 1.21211 0.91213 0.92756 1.47278 0.94519 1.19461 0.94591 0.93055 0.95662 1.20318 0.88033 0.95717 0.91793 0.92391 1.60581 1.56071 1.07137 1.06281 1.21603 0.94754 0.86951 0.98041 0.93389 1.22241 0.97189 0.95051 1.01887 1.21824 0.96991 0.95162 0.91881 1.62769 1.06720 1.13515 1.43912 1.22576 0.98377 0.87104 0.99944 1.22620 0.94263 0.96589 1.02431 1.22367 0.98512 0.95754 0.98727 1.22522 0.89269 0.94600 0.97514 0.93840 1.21347 0.98491 0.93141 0.99158 1.20817 0.96595 0.98798 0.94621 1.21198 0.95908 1.01338 0.96763 1.21385 0.92945 0.99464 0.99865 1.21431 1.00927 0.99905 0.92429 1.21367 0.94004 0.99327 0.98822 1.21025 0.94572 1.01008 0.98076 0.93026 0.96687 0.97045 0.84055 0.91895 0.91594 0.95591 0.89874 0.94307 0.89747 0.90617 0.89751 0.90627 0.90867 0.91392 0.93114 0.86538 0.84071 0.83556 0.84061 0.86549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.65 13.96 21.45 0.30 -61.35 16 2 C 0.00 0.08 5.47 84.66 0.46 0.54 16 3 Si 0.94 46.12 27.47 68.60 1.88 48.01 16 4 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.25 -11.69 6.54 99.48 0.65 -11.04 16 7 C -0.49 -28.49 9.39 25.60 0.24 -28.25 16 8 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 9 C 0.01 0.49 3.70 29.85 0.11 0.60 16 10 C 0.15 5.99 2.17 44.17 0.10 6.09 16 11 H 0.06 2.46 7.28 -2.39 -0.02 2.45 16 12 N -0.67 -25.14 5.75 -472.51 -2.71 -27.86 16 13 C 0.10 3.12 2.52 45.07 0.11 3.23 16 14 H 0.05 1.71 7.41 -2.39 -0.02 1.70 16 15 C -0.12 -3.29 4.58 30.75 0.14 -3.15 16 16 C 0.07 1.63 5.85 86.78 0.51 2.14 16 17 N -0.54 -12.64 4.65 -865.95 -4.02 -16.66 16 18 C 0.05 0.87 6.86 87.03 0.60 1.47 16 19 C -0.12 -2.00 6.99 32.01 0.22 -1.77 16 20 C -0.12 -2.43 6.61 31.71 0.21 -2.22 16 21 C 0.07 1.76 2.63 44.68 0.12 1.88 16 22 H 0.04 1.18 8.06 -2.39 -0.02 1.16 16 23 C -0.08 -2.56 5.27 30.60 0.16 -2.40 16 24 C -0.11 -3.43 2.93 -19.87 -0.06 -3.49 16 25 C -0.13 -3.86 9.64 22.27 0.21 -3.64 16 26 C -0.12 -2.74 10.05 22.27 0.22 -2.51 16 27 C -0.13 -2.70 10.05 22.27 0.22 -2.47 16 28 C -0.12 -2.70 10.05 22.27 0.22 -2.48 16 29 C -0.13 -3.67 8.51 22.27 0.19 -3.48 16 30 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 31 H 0.01 0.72 7.20 -2.39 -0.02 0.71 16 32 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 33 H 0.34 11.71 6.00 -89.70 -0.54 11.17 16 34 H 0.06 1.73 6.28 -2.39 -0.02 1.72 16 35 H 0.07 1.77 8.00 -2.39 -0.02 1.75 16 36 H 0.03 0.62 8.05 -2.39 -0.02 0.60 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.04 0.68 8.04 -2.39 -0.02 0.67 16 39 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.07 1.60 8.10 -2.39 -0.02 1.58 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.12 3.32 8.04 -2.91 -0.02 3.30 16 47 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 48 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 49 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 50 H 0.12 3.32 6.51 -2.91 -0.02 3.31 16 Total: -1.00 -68.15 379.84 -0.25 -68.40 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.30 Total: 29.38 kcal Atomic # 6 Polarization: -43.92 SS G_CDS: 4.00 Total: -39.92 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -6.44 Total: -105.87 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.88 Total: 48.01 kcal Total: -68.15 -0.25 -68.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246581980.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.645 kcal (2) G-P(sol) polarization free energy of solvation -68.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds