Wall clock time and date at job start Tue Mar 31 2020 10:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86803 * 119.99785 * 2 1 4 4 H 1.48506 * 109.46564 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47126 * 299.99755 * 3 2 1 6 6 H 1.48501 * 109.46977 * 60.00171 * 3 2 1 7 7 C 1.37874 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99773 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00358 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47228 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47085 * 55.00217 * 10 9 7 12 12 N 1.46896 * 109.47226 * 295.00422 * 10 9 7 13 13 C 1.46900 * 111.00157 * 155.00155 * 12 10 9 14 14 H 1.08999 * 109.24655 * 34.45762 * 13 12 10 15 15 C 1.52819 * 109.24698 * 274.99977 * 13 12 10 16 16 C 1.53619 * 110.67459 * 293.51127 * 15 13 12 17 17 N 1.45673 * 107.80980 * 302.56651 * 16 15 13 18 18 C 1.47091 * 116.53525 * 182.68942 * 17 16 15 19 19 C 1.55192 * 103.52470 * 197.64781 * 18 17 16 20 20 C 1.54992 * 104.93487 * 23.99209 * 19 18 17 21 21 C 1.48721 * 109.29112 * 65.60171 * 17 16 15 22 22 H 1.08995 * 110.92137 * 50.80276 * 21 17 16 23 23 C 1.52249 * 107.51572 * 290.17691 * 21 17 16 24 24 C 1.50699 * 109.47103 * 175.00381 * 10 9 7 25 25 C 1.38239 * 120.00357 * 79.72584 * 24 10 9 26 26 C 1.38226 * 119.99934 * 179.76618 * 25 24 10 27 27 C 1.38236 * 120.00327 * 0.51214 * 26 25 24 28 28 C 1.38236 * 119.99761 * 359.74209 * 27 26 25 29 29 C 1.38231 * 119.99866 * 0.02562 * 28 27 26 30 30 H 0.96994 * 119.99502 * 359.97438 * 1 2 3 31 31 H 1.09008 * 109.46758 * 59.99976 * 9 7 2 32 32 H 1.08997 * 109.47545 * 300.00442 * 9 7 2 33 33 H 1.00904 * 111.00073 * 278.95357 * 12 10 9 34 34 H 1.09002 * 109.23111 * 53.80758 * 15 13 12 35 35 H 1.09000 * 109.22800 * 173.21467 * 15 13 12 36 36 H 1.08995 * 109.79564 * 62.18218 * 16 15 13 37 37 H 1.09002 * 109.79416 * 183.03389 * 16 15 13 38 38 H 1.09004 * 110.61525 * 79.13540 * 18 17 16 39 39 H 1.09010 * 110.74272 * 316.22021 * 18 17 16 40 40 H 1.08993 * 110.34887 * 265.12645 * 19 18 17 41 41 H 1.09009 * 110.43334 * 142.90007 * 19 18 17 42 42 H 1.08991 * 110.48705 * 243.81863 * 20 19 18 43 43 H 1.09004 * 110.48902 * 121.16504 * 20 19 18 44 44 H 1.09002 * 109.83512 * 303.41251 * 23 21 17 45 45 H 1.08994 * 109.89313 * 182.47157 * 23 21 17 46 46 H 1.08003 * 119.99228 * 0.02562 * 25 24 10 47 47 H 1.08008 * 119.99639 * 180.23163 * 26 25 24 48 48 H 1.08001 * 119.99781 * 179.72702 * 27 26 25 49 49 H 1.08000 * 120.00102 * 179.97438 * 28 27 26 50 50 H 1.08004 * 119.99957 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 1 2.9301 -3.5548 0.8427 12 7 3.0075 -3.6544 -1.2543 13 6 4.3088 -4.3146 -1.0844 14 1 4.2048 -5.1369 -0.3765 15 6 5.3184 -3.3052 -0.5393 16 6 5.6014 -2.2074 -1.5759 17 7 6.0836 -2.8538 -2.7891 18 6 6.4737 -1.9668 -3.8957 19 6 6.4839 -2.9085 -5.1293 20 6 5.5294 -4.0702 -4.7530 21 6 4.9945 -3.6836 -3.3698 22 1 4.0753 -3.1060 -3.4679 23 6 4.7756 -4.8687 -2.4394 24 6 1.4960 -4.9636 0.1264 25 6 0.8887 -5.5209 -0.9834 26 6 0.2056 -6.7171 -0.8698 27 6 0.1206 -7.3509 0.3558 28 6 0.7234 -6.7910 1.4667 29 6 1.4107 -5.5971 1.3520 30 1 -0.4849 0.8400 0.0004 31 1 0.6241 -2.5574 -0.8881 32 1 0.6247 -2.5563 0.8919 33 1 2.4797 -4.0823 -2.0003 34 1 4.9173 -2.8493 0.3660 35 1 6.2482 -3.8211 -0.2997 36 1 4.6856 -1.6565 -1.7896 37 1 6.3621 -1.5264 -1.1941 38 1 7.4661 -1.5506 -3.7224 39 1 5.7422 -1.1695 -4.0277 40 1 7.4900 -3.2875 -5.3084 41 1 6.1144 -2.3847 -6.0110 42 1 6.0762 -5.0116 -4.7010 43 1 4.7129 -4.1412 -5.4716 44 1 5.7092 -5.4170 -2.3130 45 1 4.0124 -5.5282 -2.8522 46 1 0.9517 -5.0236 -1.9401 47 1 -0.2657 -7.1544 -1.7377 48 1 -0.4169 -8.2833 0.4454 49 1 0.6567 -7.2859 2.4243 50 1 1.8813 -5.1595 2.2200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246581994.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:21 Heat of formation + Delta-G solvation = 24.395347 kcal Electronic energy + Delta-G solvation = -27496.611853 eV Core-core repulsion = 24101.613230 eV Total energy + Delta-G solvation = -3394.998623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.95371 -39.01243 -36.43501 -33.93988 -32.55371 -31.88704 -30.63371 -29.80228 -28.75110 -28.23291 -26.33464 -24.33182 -22.85286 -22.21514 -21.86449 -21.15865 -20.51854 -19.73148 -18.69715 -16.97315 -16.07749 -15.61923 -15.46424 -14.99361 -14.85686 -14.69852 -14.51696 -14.24838 -13.87735 -13.49940 -13.22320 -13.05636 -12.68060 -12.59688 -12.34828 -12.25201 -12.05629 -11.99555 -11.67504 -11.25780 -11.14067 -11.01120 -10.94690 -10.79379 -10.69701 -10.58299 -10.50517 -10.37015 -10.19519 -10.09456 -9.89388 -9.54111 -8.99833 -8.62031 -8.27838 -8.20696 -8.11714 -7.59428 -5.89461 -3.87214 1.70435 1.71411 3.35623 3.43625 3.47256 4.11882 4.27688 4.54414 4.68352 4.79930 4.88561 5.10104 5.15653 5.19666 5.26118 5.30402 5.32915 5.40069 5.46287 5.48178 5.61969 5.65622 5.76109 5.82830 5.84941 5.86514 5.93713 5.95148 6.00630 6.06781 6.07997 6.17758 6.25291 6.25974 6.33824 6.34479 6.41137 6.48020 6.56318 6.70884 6.76810 6.77512 6.85969 7.00518 7.24862 7.33430 7.55181 7.55999 7.68353 8.00026 8.04579 8.15735 8.56142 9.18249 9.73883 11.22530 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.007868 B = 0.006453 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.031409 B = 4338.095739 C = 7063.943425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.051 3.949 3 Si 0.885 3.115 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.485 4.485 8 H 0.061 0.939 9 C 0.043 3.957 10 C 0.129 3.871 11 H 0.074 0.926 12 N -0.654 5.654 13 C 0.086 3.914 14 H 0.036 0.964 15 C -0.094 4.094 16 C 0.059 3.941 17 N -0.525 5.525 18 C 0.041 3.959 19 C -0.120 4.120 20 C -0.118 4.118 21 C 0.066 3.934 22 H 0.068 0.932 23 C -0.102 4.102 24 C -0.089 4.089 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.138 4.138 28 C -0.121 4.121 29 C -0.117 4.117 30 H 0.256 0.744 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.330 0.670 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.119 0.881 47 H 0.115 0.885 48 H 0.113 0.887 49 H 0.115 0.885 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.583 -12.420 -5.412 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.148 4.148 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.523 4.523 8 H 0.080 0.920 9 C 0.005 3.995 10 C 0.020 3.980 11 H 0.092 0.908 12 N -0.285 5.285 13 C -0.024 4.024 14 H 0.054 0.946 15 C -0.133 4.133 16 C -0.068 4.068 17 N -0.250 5.250 18 C -0.087 4.087 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.042 4.042 22 H 0.086 0.914 23 C -0.140 4.140 24 C -0.091 4.091 25 C -0.137 4.137 26 C -0.138 4.138 27 C -0.156 4.156 28 C -0.139 4.139 29 C -0.136 4.136 30 H 0.066 0.934 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.151 0.849 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.078 0.922 46 H 0.137 0.863 47 H 0.133 0.867 48 H 0.131 0.869 49 H 0.133 0.867 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.163 -11.912 -5.133 15.881 hybrid contribution -0.704 0.602 -0.094 0.931 sum 8.459 -11.310 -5.226 15.060 Atomic orbital electron populations 1.69981 1.05948 1.26053 1.52313 1.24988 0.94718 0.98926 0.96204 0.86636 0.80219 0.84444 0.77272 1.19788 1.21405 1.21426 1.21145 0.93208 0.89964 1.48005 0.92035 1.19076 0.92748 0.90530 0.97102 1.21006 0.94790 0.90650 0.91584 0.90795 1.60754 1.03297 1.57760 1.06732 1.21562 0.91089 0.94291 0.95430 0.94616 1.21494 0.97323 0.96287 0.98183 1.21926 0.99206 0.95988 0.89717 1.63983 1.34865 1.21939 1.04180 1.22781 1.00398 0.94702 0.90865 1.22501 0.99819 0.96353 0.97116 1.22183 0.98634 0.98514 0.96330 1.22329 0.94151 0.95282 0.92469 0.91437 1.21652 1.00943 0.96552 0.94899 1.21198 0.97392 0.97293 0.93179 1.20946 0.98288 0.95676 0.98781 1.21047 0.99525 0.95815 0.97375 1.21000 1.01149 1.00190 0.93230 1.21076 0.98367 0.96281 0.98211 1.21085 0.99889 0.95243 0.97384 0.93411 0.96439 0.96494 0.84944 0.91149 0.92551 0.91899 0.92175 0.90883 0.94146 0.91532 0.91836 0.91456 0.91732 0.91111 0.92196 0.86311 0.86691 0.86855 0.86722 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 2 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.48 -13.07 8.84 -34.44 -0.30 -13.37 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.04 1.06 4.63 -27.88 -0.13 0.93 16 10 C 0.13 2.50 1.95 -68.87 -0.13 2.36 16 11 H 0.07 1.47 6.94 -51.93 -0.36 1.11 16 12 N -0.65 -11.36 4.66 -100.69 -0.47 -11.83 16 13 C 0.09 1.31 2.60 -67.46 -0.18 1.13 16 14 H 0.04 0.56 7.61 -51.93 -0.40 0.16 16 15 C -0.09 -1.48 5.62 -26.50 -0.15 -1.63 16 16 C 0.06 0.97 5.73 -4.17 -0.02 0.95 16 17 N -0.52 -7.61 4.84 -224.49 -1.09 -8.69 16 18 C 0.04 0.53 6.71 -2.56 -0.02 0.52 16 19 C -0.12 -1.32 7.05 -24.52 -0.17 -1.49 16 20 C -0.12 -1.35 6.65 -25.54 -0.17 -1.52 16 21 C 0.07 0.91 2.39 -66.95 -0.16 0.75 16 22 H 0.07 1.09 7.40 -51.93 -0.38 0.70 16 23 C -0.10 -1.35 5.02 -26.77 -0.13 -1.49 16 24 C -0.09 -1.53 4.60 -104.62 -0.48 -2.02 16 25 C -0.12 -1.89 9.11 -39.59 -0.36 -2.25 16 26 C -0.12 -1.68 10.05 -39.59 -0.40 -2.08 16 27 C -0.14 -1.85 10.05 -39.58 -0.40 -2.25 16 28 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 29 C -0.12 -1.88 9.67 -39.58 -0.38 -2.26 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.02 0.47 8.14 -51.92 -0.42 0.04 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.33 5.51 5.87 -39.29 -0.23 5.28 16 34 H 0.07 1.21 7.33 -51.93 -0.38 0.83 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.23 7.80 -51.93 -0.41 0.82 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 42 H 0.07 0.73 8.00 -51.93 -0.42 0.31 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 0.74 8.04 -51.93 -0.42 0.32 16 46 H 0.12 1.83 6.53 -52.48 -0.34 1.49 16 47 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 48 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 49 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 50 H 0.12 1.79 8.04 -52.48 -0.42 1.37 16 LS Contribution 385.02 15.07 5.80 5.80 Total: -1.00 -29.29 385.02 -12.92 -42.20 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -8.79 Total: 6.53 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -4.09 Total: -24.49 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.82 Total: -46.81 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.29 -12.92 -42.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246581994.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.598 kcal (2) G-P(sol) polarization free energy of solvation -29.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds