Wall clock time and date at job start Tue Mar 31 2020 10:52:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31523 * 1
3 3 Si 1.86803 * 119.99785 * 2 1
4 4 H 1.48506 * 109.46564 * 179.97438 * 3 2 1
5 5 H 1.48496 * 109.47126 * 299.99755 * 3 2 1
6 6 H 1.48501 * 109.46977 * 60.00171 * 3 2 1
7 7 C 1.37874 * 119.99740 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99773 * 179.97438 * 7 2 1
9 9 C 1.50697 * 120.00358 * 359.97438 * 7 2 1
10 10 C 1.53001 * 109.47228 * 179.97438 * 9 7 2
11 11 H 1.08999 * 109.47085 * 55.00217 * 10 9 7
12 12 N 1.46896 * 109.47226 * 295.00422 * 10 9 7
13 13 C 1.46900 * 111.00157 * 155.00155 * 12 10 9
14 14 H 1.08999 * 109.24655 * 34.45762 * 13 12 10
15 15 C 1.52819 * 109.24698 * 274.99977 * 13 12 10
16 16 C 1.53619 * 110.67459 * 293.51127 * 15 13 12
17 17 N 1.45673 * 107.80980 * 302.56651 * 16 15 13
18 18 C 1.47091 * 116.53525 * 182.68942 * 17 16 15
19 19 C 1.55192 * 103.52470 * 197.64781 * 18 17 16
20 20 C 1.54992 * 104.93487 * 23.99209 * 19 18 17
21 21 C 1.48721 * 109.29112 * 65.60171 * 17 16 15
22 22 H 1.08995 * 110.92137 * 50.80276 * 21 17 16
23 23 C 1.52249 * 107.51572 * 290.17691 * 21 17 16
24 24 C 1.50699 * 109.47103 * 175.00381 * 10 9 7
25 25 C 1.38239 * 120.00357 * 79.72584 * 24 10 9
26 26 C 1.38226 * 119.99934 * 179.76618 * 25 24 10
27 27 C 1.38236 * 120.00327 * 0.51214 * 26 25 24
28 28 C 1.38236 * 119.99761 * 359.74209 * 27 26 25
29 29 C 1.38231 * 119.99866 * 0.02562 * 28 27 26
30 30 H 0.96994 * 119.99502 * 359.97438 * 1 2 3
31 31 H 1.09008 * 109.46758 * 59.99976 * 9 7 2
32 32 H 1.08997 * 109.47545 * 300.00442 * 9 7 2
33 33 H 1.00904 * 111.00073 * 278.95357 * 12 10 9
34 34 H 1.09002 * 109.23111 * 53.80758 * 15 13 12
35 35 H 1.09000 * 109.22800 * 173.21467 * 15 13 12
36 36 H 1.08995 * 109.79564 * 62.18218 * 16 15 13
37 37 H 1.09002 * 109.79416 * 183.03389 * 16 15 13
38 38 H 1.09004 * 110.61525 * 79.13540 * 18 17 16
39 39 H 1.09010 * 110.74272 * 316.22021 * 18 17 16
40 40 H 1.08993 * 110.34887 * 265.12645 * 19 18 17
41 41 H 1.09009 * 110.43334 * 142.90007 * 19 18 17
42 42 H 1.08991 * 110.48705 * 243.81863 * 20 19 18
43 43 H 1.09004 * 110.48902 * 121.16504 * 20 19 18
44 44 H 1.09002 * 109.83512 * 303.41251 * 23 21 17
45 45 H 1.08994 * 109.89313 * 182.47157 * 23 21 17
46 46 H 1.08003 * 119.99228 * 0.02562 * 25 24 10
47 47 H 1.08008 * 119.99639 * 180.23163 * 26 25 24
48 48 H 1.08001 * 119.99781 * 179.72702 * 27 26 25
49 49 H 1.08000 * 120.00102 * 179.97438 * 28 27 26
50 50 H 1.08004 * 119.99957 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.7092 1.3463 0.0006
5 1 1.8905 2.3964 -1.2125
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2511 -2.4991 0.0017
10 6 2.2453 -3.6621 0.0015
11 1 2.9301 -3.5548 0.8427
12 7 3.0075 -3.6544 -1.2543
13 6 4.3088 -4.3146 -1.0844
14 1 4.2048 -5.1369 -0.3765
15 6 5.3184 -3.3052 -0.5393
16 6 5.6014 -2.2074 -1.5759
17 7 6.0836 -2.8538 -2.7891
18 6 6.4737 -1.9668 -3.8957
19 6 6.4839 -2.9085 -5.1293
20 6 5.5294 -4.0702 -4.7530
21 6 4.9945 -3.6836 -3.3698
22 1 4.0753 -3.1060 -3.4679
23 6 4.7756 -4.8687 -2.4394
24 6 1.4960 -4.9636 0.1264
25 6 0.8887 -5.5209 -0.9834
26 6 0.2056 -6.7171 -0.8698
27 6 0.1206 -7.3509 0.3558
28 6 0.7234 -6.7910 1.4667
29 6 1.4107 -5.5971 1.3520
30 1 -0.4849 0.8400 0.0004
31 1 0.6241 -2.5574 -0.8881
32 1 0.6247 -2.5563 0.8919
33 1 2.4797 -4.0823 -2.0003
34 1 4.9173 -2.8493 0.3660
35 1 6.2482 -3.8211 -0.2997
36 1 4.6856 -1.6565 -1.7896
37 1 6.3621 -1.5264 -1.1941
38 1 7.4661 -1.5506 -3.7224
39 1 5.7422 -1.1695 -4.0277
40 1 7.4900 -3.2875 -5.3084
41 1 6.1144 -2.3847 -6.0110
42 1 6.0762 -5.0116 -4.7010
43 1 4.7129 -4.1412 -5.4716
44 1 5.7092 -5.4170 -2.3130
45 1 4.0124 -5.5282 -2.8522
46 1 0.9517 -5.0236 -1.9401
47 1 -0.2657 -7.1544 -1.7377
48 1 -0.4169 -8.2833 0.4454
49 1 0.6567 -7.2859 2.4243
50 1 1.8813 -5.1595 2.2200
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000246581994.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:52:20
Heat of formation + Delta-G solvation = 8.600674 kcal
Electronic energy + Delta-G solvation = -27497.296762 eV
Core-core repulsion = 24101.613230 eV
Total energy + Delta-G solvation = -3395.683532 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 314.205 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.16353 -40.20135 -37.71548 -35.49521 -34.30971 -33.19854 -31.79432 -30.96764
-30.36829 -29.57483 -27.58831 -26.08019 -24.10530 -23.58955 -23.24946 -22.30158
-21.52664 -21.18337 -19.97072 -18.61840 -17.72444 -16.82135 -16.62177 -16.53864
-16.23325 -16.09209 -15.82643 -15.46099 -15.22766 -14.76420 -14.48090 -14.35920
-14.18233 -14.00083 -13.64858 -13.53698 -13.43917 -13.34130 -13.05086 -12.87613
-12.62771 -12.37357 -12.31355 -12.16323 -12.06749 -11.95854 -11.86889 -11.75050
-11.61211 -11.30844 -11.16172 -11.08576 -11.07934 -10.50491 -9.78269 -9.51145
-9.37942 -8.96748 -8.10563 -6.14466 0.51876 0.54118 1.36524 1.37965
1.49949 2.44272 2.93680 3.12470 3.22511 3.44792 3.66615 3.80098
3.96255 4.01917 4.11970 4.16741 4.18557 4.21282 4.28134 4.31815
4.45320 4.52214 4.55846 4.67497 4.69674 4.73580 4.76548 4.84526
4.86630 4.93879 4.99614 5.05707 5.11555 5.14877 5.16962 5.18024
5.18994 5.21828 5.26892 5.37174 5.45024 5.53129 5.61182 5.62920
5.64846 5.76635 5.89928 6.10135 6.17575 6.32610 6.34015 6.49328
6.71593 6.99546 7.50642 9.01893
Molecular weight = 314.21amu
Principal moments of inertia in cm(-1)
A = 0.007868 B = 0.006453 C = 0.003963
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3558.031409 B = 4338.095739 C = 7063.943425
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.941 5.941
2 C -0.004 4.004
3 Si 0.949 3.051
4 H -0.265 1.265
5 H -0.286 1.286
6 H -0.283 1.283
7 C -0.486 4.486
8 H 0.061 0.939
9 C 0.055 3.945
10 C 0.148 3.852
11 H 0.062 0.938
12 N -0.663 5.663
13 C 0.091 3.909
14 H 0.036 0.964
15 C -0.091 4.091
16 C 0.066 3.934
17 N -0.522 5.522
18 C 0.034 3.966
19 C -0.113 4.113
20 C -0.114 4.114
21 C 0.065 3.935
22 H 0.038 0.962
23 C -0.093 4.093
24 C -0.112 4.112
25 C -0.132 4.132
26 C -0.120 4.120
27 C -0.131 4.131
28 C -0.121 4.121
29 C -0.135 4.135
30 H 0.257 0.743
31 H -0.012 1.012
32 H -0.017 1.017
33 H 0.334 0.666
34 H 0.047 0.953
35 H 0.074 0.926
36 H 0.023 0.977
37 H 0.062 0.938
38 H 0.083 0.917
39 H 0.022 0.978
40 H 0.082 0.918
41 H 0.074 0.926
42 H 0.081 0.919
43 H 0.073 0.927
44 H 0.084 0.916
45 H 0.072 0.928
46 H 0.115 0.885
47 H 0.143 0.857
48 H 0.149 0.851
49 H 0.143 0.857
50 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.925 -14.669 -6.361 18.819
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.583 5.583
2 C -0.200 4.200
3 Si 0.776 3.224
4 H -0.189 1.189
5 H -0.212 1.212
6 H -0.209 1.209
7 C -0.525 4.525
8 H 0.079 0.921
9 C 0.017 3.983
10 C 0.038 3.962
11 H 0.080 0.920
12 N -0.295 5.295
13 C -0.019 4.019
14 H 0.054 0.946
15 C -0.130 4.130
16 C -0.062 4.062
17 N -0.246 5.246
18 C -0.094 4.094
19 C -0.151 4.151
20 C -0.152 4.152
21 C -0.044 4.044
22 H 0.056 0.944
23 C -0.131 4.131
24 C -0.114 4.114
25 C -0.150 4.150
26 C -0.138 4.138
27 C -0.149 4.149
28 C -0.139 4.139
29 C -0.153 4.153
30 H 0.066 0.934
31 H 0.006 0.994
32 H 0.002 0.998
33 H 0.154 0.846
34 H 0.066 0.934
35 H 0.093 0.907
36 H 0.041 0.959
37 H 0.080 0.920
38 H 0.102 0.898
39 H 0.040 0.960
40 H 0.101 0.899
41 H 0.093 0.907
42 H 0.100 0.900
43 H 0.092 0.908
44 H 0.102 0.898
45 H 0.090 0.910
46 H 0.133 0.867
47 H 0.161 0.839
48 H 0.166 0.834
49 H 0.161 0.839
50 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 10.524 -14.172 -6.086 18.672
hybrid contribution -1.157 1.256 0.217 1.721
sum 9.367 -12.916 -5.870 17.000
Atomic orbital electron populations
1.70114 1.07522 1.26868 1.53829 1.25799 0.95499 1.02543 0.96173
0.85623 0.79306 0.80216 0.77260 1.18862 1.21177 1.20887 1.21458
0.93294 0.91073 1.46643 0.92071 1.18844 0.93026 0.92470 0.93943
1.20449 0.93541 0.90098 0.92109 0.91977 1.60609 1.04111 1.58839
1.05925 1.21551 0.89559 0.93850 0.96892 0.94631 1.21458 0.98138
0.96297 0.97074 1.21757 0.97427 0.95972 0.91064 1.64041 1.34622
1.21951 1.04031 1.22913 1.00302 0.94726 0.91495 1.22499 1.00730
0.95637 0.96233 1.22183 0.99106 0.99251 0.94624 1.22339 0.92883
0.94921 0.94216 0.94437 1.21597 1.01789 0.96426 0.93260 1.20982
0.98947 0.96870 0.94592 1.21036 0.98965 0.96785 0.98216 1.21391
0.98607 0.94828 0.98930 1.21450 1.00036 1.01018 0.92423 1.21416
0.97243 0.95305 0.99919 1.21231 1.00835 0.96466 0.96808 0.93428
0.99372 0.99830 0.84593 0.93445 0.90749 0.95884 0.91987 0.89831
0.95955 0.89891 0.90747 0.89997 0.90824 0.89769 0.90956 0.86675
0.83928 0.83359 0.83928 0.86509
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -58.61 13.29 21.45 0.28 -58.33 16
2 C 0.00 -0.26 5.46 84.65 0.46 0.20 16
3 Si 0.95 46.10 29.54 68.60 2.03 48.13 16
4 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16
5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16
6 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16
7 C -0.49 -27.54 8.84 25.60 0.23 -27.31 16
8 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16
9 C 0.05 2.88 4.63 29.85 0.14 3.02 16
10 C 0.15 6.04 1.95 44.17 0.09 6.13 16
11 H 0.06 2.63 6.94 -2.39 -0.02 2.61 16
12 N -0.66 -24.07 4.66 -472.48 -2.20 -26.27 16
13 C 0.09 2.77 2.60 45.08 0.12 2.89 16
14 H 0.04 1.10 7.61 -2.39 -0.02 1.08 16
15 C -0.09 -2.90 5.62 30.74 0.17 -2.73 16
16 C 0.07 2.21 5.73 86.74 0.50 2.71 16
17 N -0.52 -14.77 4.84 -864.16 -4.19 -18.95 16
18 C 0.03 0.85 6.71 87.02 0.58 1.43 16
19 C -0.11 -2.21 7.05 32.03 0.23 -1.98 16
20 C -0.11 -2.32 6.65 31.36 0.21 -2.11 16
21 C 0.06 1.72 2.39 44.40 0.11 1.83 16
22 H 0.04 1.24 7.40 -2.39 -0.02 1.22 16
23 C -0.09 -2.32 5.02 30.57 0.15 -2.17 16
24 C -0.11 -3.98 4.60 -19.87 -0.09 -4.07 16
25 C -0.13 -4.19 9.11 22.27 0.20 -3.99 16
26 C -0.12 -3.10 10.05 22.27 0.22 -2.88 16
27 C -0.13 -3.12 10.05 22.27 0.22 -2.89 16
28 C -0.12 -3.14 10.05 22.27 0.22 -2.92 16
29 C -0.13 -4.33 9.67 22.27 0.22 -4.11 16
30 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16
31 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16
32 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16
33 H 0.33 11.59 5.87 -89.69 -0.53 11.06 16
34 H 0.05 1.71 7.33 -2.39 -0.02 1.69 16
35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16
36 H 0.02 0.94 7.80 -2.39 -0.02 0.93 16
37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16
38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16
39 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16
40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16
41 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16
42 H 0.08 1.47 8.00 -2.39 -0.02 1.45 16
43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
44 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16
45 H 0.07 1.65 8.04 -2.39 -0.02 1.63 16
46 H 0.12 3.64 6.53 -2.91 -0.02 3.62 16
47 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16
48 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16
49 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16
50 H 0.12 3.65 8.04 -2.91 -0.02 3.62 16
Total: -1.00 -66.37 385.02 0.27 -66.10
By element:
Atomic # 1 Polarization: 27.91 SS G_CDS: 0.37 Total: 28.27 kcal
Atomic # 6 Polarization: -42.92 SS G_CDS: 3.98 Total: -38.95 kcal
Atomic # 7 Polarization: -97.45 SS G_CDS: -6.10 Total: -103.55 kcal
Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal
Total: -66.37 0.27 -66.10 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000246581994.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.702 kcal
(2) G-P(sol) polarization free energy of solvation -66.367 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.335 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.101 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.601 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds