Wall clock time and date at job start Tue Mar 31 2020 10:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86803 * 119.99785 * 2 1 4 4 H 1.48506 * 109.46564 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47126 * 299.99755 * 3 2 1 6 6 H 1.48501 * 109.46977 * 60.00171 * 3 2 1 7 7 C 1.37874 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99773 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00358 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47228 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47085 * 55.00217 * 10 9 7 12 12 N 1.46896 * 109.47226 * 295.00422 * 10 9 7 13 13 C 1.46900 * 111.00157 * 155.00155 * 12 10 9 14 14 H 1.08999 * 109.24655 * 34.45762 * 13 12 10 15 15 C 1.52819 * 109.24698 * 274.99977 * 13 12 10 16 16 C 1.53619 * 110.67459 * 293.51127 * 15 13 12 17 17 N 1.45673 * 107.80980 * 302.56651 * 16 15 13 18 18 C 1.47091 * 116.53525 * 182.68942 * 17 16 15 19 19 C 1.55192 * 103.52470 * 197.64781 * 18 17 16 20 20 C 1.54992 * 104.93487 * 23.99209 * 19 18 17 21 21 C 1.48721 * 109.29112 * 65.60171 * 17 16 15 22 22 H 1.08995 * 110.92137 * 50.80276 * 21 17 16 23 23 C 1.52249 * 107.51572 * 290.17691 * 21 17 16 24 24 C 1.50699 * 109.47103 * 175.00381 * 10 9 7 25 25 C 1.38239 * 120.00357 * 79.72584 * 24 10 9 26 26 C 1.38226 * 119.99934 * 179.76618 * 25 24 10 27 27 C 1.38236 * 120.00327 * 0.51214 * 26 25 24 28 28 C 1.38236 * 119.99761 * 359.74209 * 27 26 25 29 29 C 1.38231 * 119.99866 * 0.02562 * 28 27 26 30 30 H 0.96994 * 119.99502 * 359.97438 * 1 2 3 31 31 H 1.09008 * 109.46758 * 59.99976 * 9 7 2 32 32 H 1.08997 * 109.47545 * 300.00442 * 9 7 2 33 33 H 1.00904 * 111.00073 * 278.95357 * 12 10 9 34 34 H 1.09002 * 109.23111 * 53.80758 * 15 13 12 35 35 H 1.09000 * 109.22800 * 173.21467 * 15 13 12 36 36 H 1.08995 * 109.79564 * 62.18218 * 16 15 13 37 37 H 1.09002 * 109.79416 * 183.03389 * 16 15 13 38 38 H 1.09004 * 110.61525 * 79.13540 * 18 17 16 39 39 H 1.09010 * 110.74272 * 316.22021 * 18 17 16 40 40 H 1.08993 * 110.34887 * 265.12645 * 19 18 17 41 41 H 1.09009 * 110.43334 * 142.90007 * 19 18 17 42 42 H 1.08991 * 110.48705 * 243.81863 * 20 19 18 43 43 H 1.09004 * 110.48902 * 121.16504 * 20 19 18 44 44 H 1.09002 * 109.83512 * 303.41251 * 23 21 17 45 45 H 1.08994 * 109.89313 * 182.47157 * 23 21 17 46 46 H 1.08003 * 119.99228 * 0.02562 * 25 24 10 47 47 H 1.08008 * 119.99639 * 180.23163 * 26 25 24 48 48 H 1.08001 * 119.99781 * 179.72702 * 27 26 25 49 49 H 1.08000 * 120.00102 * 179.97438 * 28 27 26 50 50 H 1.08004 * 119.99957 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 1 2.9301 -3.5548 0.8427 12 7 3.0075 -3.6544 -1.2543 13 6 4.3088 -4.3146 -1.0844 14 1 4.2048 -5.1369 -0.3765 15 6 5.3184 -3.3052 -0.5393 16 6 5.6014 -2.2074 -1.5759 17 7 6.0836 -2.8538 -2.7891 18 6 6.4737 -1.9668 -3.8957 19 6 6.4839 -2.9085 -5.1293 20 6 5.5294 -4.0702 -4.7530 21 6 4.9945 -3.6836 -3.3698 22 1 4.0753 -3.1060 -3.4679 23 6 4.7756 -4.8687 -2.4394 24 6 1.4960 -4.9636 0.1264 25 6 0.8887 -5.5209 -0.9834 26 6 0.2056 -6.7171 -0.8698 27 6 0.1206 -7.3509 0.3558 28 6 0.7234 -6.7910 1.4667 29 6 1.4107 -5.5971 1.3520 30 1 -0.4849 0.8400 0.0004 31 1 0.6241 -2.5574 -0.8881 32 1 0.6247 -2.5563 0.8919 33 1 2.4797 -4.0823 -2.0003 34 1 4.9173 -2.8493 0.3660 35 1 6.2482 -3.8211 -0.2997 36 1 4.6856 -1.6565 -1.7896 37 1 6.3621 -1.5264 -1.1941 38 1 7.4661 -1.5506 -3.7224 39 1 5.7422 -1.1695 -4.0277 40 1 7.4900 -3.2875 -5.3084 41 1 6.1144 -2.3847 -6.0110 42 1 6.0762 -5.0116 -4.7010 43 1 4.7129 -4.1412 -5.4716 44 1 5.7092 -5.4170 -2.3130 45 1 4.0124 -5.5282 -2.8522 46 1 0.9517 -5.0236 -1.9401 47 1 -0.2657 -7.1544 -1.7377 48 1 -0.4169 -8.2833 0.4454 49 1 0.6567 -7.2859 2.4243 50 1 1.8813 -5.1595 2.2200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246581994.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:20 Heat of formation + Delta-G solvation = 8.600674 kcal Electronic energy + Delta-G solvation = -27497.296762 eV Core-core repulsion = 24101.613230 eV Total energy + Delta-G solvation = -3395.683532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.16353 -40.20135 -37.71548 -35.49521 -34.30971 -33.19854 -31.79432 -30.96764 -30.36829 -29.57483 -27.58831 -26.08019 -24.10530 -23.58955 -23.24946 -22.30158 -21.52664 -21.18337 -19.97072 -18.61840 -17.72444 -16.82135 -16.62177 -16.53864 -16.23325 -16.09209 -15.82643 -15.46099 -15.22766 -14.76420 -14.48090 -14.35920 -14.18233 -14.00083 -13.64858 -13.53698 -13.43917 -13.34130 -13.05086 -12.87613 -12.62771 -12.37357 -12.31355 -12.16323 -12.06749 -11.95854 -11.86889 -11.75050 -11.61211 -11.30844 -11.16172 -11.08576 -11.07934 -10.50491 -9.78269 -9.51145 -9.37942 -8.96748 -8.10563 -6.14466 0.51876 0.54118 1.36524 1.37965 1.49949 2.44272 2.93680 3.12470 3.22511 3.44792 3.66615 3.80098 3.96255 4.01917 4.11970 4.16741 4.18557 4.21282 4.28134 4.31815 4.45320 4.52214 4.55846 4.67497 4.69674 4.73580 4.76548 4.84526 4.86630 4.93879 4.99614 5.05707 5.11555 5.14877 5.16962 5.18024 5.18994 5.21828 5.26892 5.37174 5.45024 5.53129 5.61182 5.62920 5.64846 5.76635 5.89928 6.10135 6.17575 6.32610 6.34015 6.49328 6.71593 6.99546 7.50642 9.01893 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.007868 B = 0.006453 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.031409 B = 4338.095739 C = 7063.943425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.004 4.004 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.486 4.486 8 H 0.061 0.939 9 C 0.055 3.945 10 C 0.148 3.852 11 H 0.062 0.938 12 N -0.663 5.663 13 C 0.091 3.909 14 H 0.036 0.964 15 C -0.091 4.091 16 C 0.066 3.934 17 N -0.522 5.522 18 C 0.034 3.966 19 C -0.113 4.113 20 C -0.114 4.114 21 C 0.065 3.935 22 H 0.038 0.962 23 C -0.093 4.093 24 C -0.112 4.112 25 C -0.132 4.132 26 C -0.120 4.120 27 C -0.131 4.131 28 C -0.121 4.121 29 C -0.135 4.135 30 H 0.257 0.743 31 H -0.012 1.012 32 H -0.017 1.017 33 H 0.334 0.666 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.023 0.977 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.022 0.978 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.115 0.885 47 H 0.143 0.857 48 H 0.149 0.851 49 H 0.143 0.857 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.925 -14.669 -6.361 18.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.200 4.200 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.525 4.525 8 H 0.079 0.921 9 C 0.017 3.983 10 C 0.038 3.962 11 H 0.080 0.920 12 N -0.295 5.295 13 C -0.019 4.019 14 H 0.054 0.946 15 C -0.130 4.130 16 C -0.062 4.062 17 N -0.246 5.246 18 C -0.094 4.094 19 C -0.151 4.151 20 C -0.152 4.152 21 C -0.044 4.044 22 H 0.056 0.944 23 C -0.131 4.131 24 C -0.114 4.114 25 C -0.150 4.150 26 C -0.138 4.138 27 C -0.149 4.149 28 C -0.139 4.139 29 C -0.153 4.153 30 H 0.066 0.934 31 H 0.006 0.994 32 H 0.002 0.998 33 H 0.154 0.846 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.040 0.960 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.133 0.867 47 H 0.161 0.839 48 H 0.166 0.834 49 H 0.161 0.839 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.524 -14.172 -6.086 18.672 hybrid contribution -1.157 1.256 0.217 1.721 sum 9.367 -12.916 -5.870 17.000 Atomic orbital electron populations 1.70114 1.07522 1.26868 1.53829 1.25799 0.95499 1.02543 0.96173 0.85623 0.79306 0.80216 0.77260 1.18862 1.21177 1.20887 1.21458 0.93294 0.91073 1.46643 0.92071 1.18844 0.93026 0.92470 0.93943 1.20449 0.93541 0.90098 0.92109 0.91977 1.60609 1.04111 1.58839 1.05925 1.21551 0.89559 0.93850 0.96892 0.94631 1.21458 0.98138 0.96297 0.97074 1.21757 0.97427 0.95972 0.91064 1.64041 1.34622 1.21951 1.04031 1.22913 1.00302 0.94726 0.91495 1.22499 1.00730 0.95637 0.96233 1.22183 0.99106 0.99251 0.94624 1.22339 0.92883 0.94921 0.94216 0.94437 1.21597 1.01789 0.96426 0.93260 1.20982 0.98947 0.96870 0.94592 1.21036 0.98965 0.96785 0.98216 1.21391 0.98607 0.94828 0.98930 1.21450 1.00036 1.01018 0.92423 1.21416 0.97243 0.95305 0.99919 1.21231 1.00835 0.96466 0.96808 0.93428 0.99372 0.99830 0.84593 0.93445 0.90749 0.95884 0.91987 0.89831 0.95955 0.89891 0.90747 0.89997 0.90824 0.89769 0.90956 0.86675 0.83928 0.83359 0.83928 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.61 13.29 21.45 0.28 -58.33 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 3 Si 0.95 46.10 29.54 68.60 2.03 48.13 16 4 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 7 C -0.49 -27.54 8.84 25.60 0.23 -27.31 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 9 C 0.05 2.88 4.63 29.85 0.14 3.02 16 10 C 0.15 6.04 1.95 44.17 0.09 6.13 16 11 H 0.06 2.63 6.94 -2.39 -0.02 2.61 16 12 N -0.66 -24.07 4.66 -472.48 -2.20 -26.27 16 13 C 0.09 2.77 2.60 45.08 0.12 2.89 16 14 H 0.04 1.10 7.61 -2.39 -0.02 1.08 16 15 C -0.09 -2.90 5.62 30.74 0.17 -2.73 16 16 C 0.07 2.21 5.73 86.74 0.50 2.71 16 17 N -0.52 -14.77 4.84 -864.16 -4.19 -18.95 16 18 C 0.03 0.85 6.71 87.02 0.58 1.43 16 19 C -0.11 -2.21 7.05 32.03 0.23 -1.98 16 20 C -0.11 -2.32 6.65 31.36 0.21 -2.11 16 21 C 0.06 1.72 2.39 44.40 0.11 1.83 16 22 H 0.04 1.24 7.40 -2.39 -0.02 1.22 16 23 C -0.09 -2.32 5.02 30.57 0.15 -2.17 16 24 C -0.11 -3.98 4.60 -19.87 -0.09 -4.07 16 25 C -0.13 -4.19 9.11 22.27 0.20 -3.99 16 26 C -0.12 -3.10 10.05 22.27 0.22 -2.88 16 27 C -0.13 -3.12 10.05 22.27 0.22 -2.89 16 28 C -0.12 -3.14 10.05 22.27 0.22 -2.92 16 29 C -0.13 -4.33 9.67 22.27 0.22 -4.11 16 30 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 31 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 32 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 33 H 0.33 11.59 5.87 -89.69 -0.53 11.06 16 34 H 0.05 1.71 7.33 -2.39 -0.02 1.69 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.02 0.94 7.80 -2.39 -0.02 0.93 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.08 1.47 8.00 -2.39 -0.02 1.45 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.07 1.65 8.04 -2.39 -0.02 1.63 16 46 H 0.12 3.64 6.53 -2.91 -0.02 3.62 16 47 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 48 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 49 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 50 H 0.12 3.65 8.04 -2.91 -0.02 3.62 16 Total: -1.00 -66.37 385.02 0.27 -66.10 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.37 Total: 28.27 kcal Atomic # 6 Polarization: -42.92 SS G_CDS: 3.98 Total: -38.95 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -6.10 Total: -103.55 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -66.37 0.27 -66.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246581994.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.702 kcal (2) G-P(sol) polarization free energy of solvation -66.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds