Wall clock time and date at job start Tue Mar 31 2020 10:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99665 * 2 1 4 4 H 1.48497 * 109.46961 * 269.99590 * 3 2 1 5 5 H 1.48491 * 109.47031 * 29.99571 * 3 2 1 6 6 H 1.48497 * 109.46707 * 149.99614 * 3 2 1 7 7 C 1.37877 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00215 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99845 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46945 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47103 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47030 * 179.97438 * 11 10 9 13 13 C 1.46956 * 110.99662 * 169.99963 * 12 11 10 14 14 C 1.53057 * 109.36218 * 183.19070 * 13 12 11 15 15 N 1.46957 * 109.36398 * 301.59807 * 14 13 12 16 16 C 1.46904 * 111.00059 * 183.19146 * 15 14 13 17 17 C 1.50697 * 109.47356 * 170.00330 * 16 15 14 18 18 C 1.32562 * 120.00471 * 127.14180 * 17 16 15 19 19 C 1.47817 * 119.99843 * 8.50685 * 18 17 16 20 20 C 1.39542 * 120.13821 * 37.95508 * 19 18 17 21 21 C 1.37966 * 119.85239 * 179.97438 * 20 19 18 22 22 C 1.38341 * 120.14820 * 359.97438 * 21 20 19 23 23 C 1.38350 * 120.28247 * 359.97438 * 22 21 20 24 24 C 1.37977 * 120.14241 * 0.02562 * 23 22 21 25 25 C 1.46953 * 110.87793 * 59.32153 * 15 14 13 26 26 C 1.46953 * 111.00426 * 293.80224 * 12 11 10 27 27 H 0.96994 * 120.00256 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47448 * 60.00042 * 9 7 2 29 29 H 1.09004 * 109.47193 * 300.00091 * 9 7 2 30 30 H 1.08998 * 109.47476 * 60.00106 * 10 9 7 31 31 H 1.08993 * 109.47390 * 299.99578 * 10 9 7 32 32 H 1.08998 * 109.46667 * 59.99857 * 11 10 9 33 33 H 1.09002 * 109.46832 * 300.00361 * 11 10 9 34 34 H 1.09002 * 109.49103 * 63.22569 * 13 12 11 35 35 H 1.09005 * 109.49425 * 303.15451 * 13 12 11 36 36 H 1.09003 * 109.48744 * 181.63224 * 14 13 12 37 37 H 1.08997 * 109.49102 * 61.57063 * 14 13 12 38 38 H 1.08993 * 109.47165 * 49.99574 * 16 15 14 39 39 H 1.09000 * 109.46795 * 290.00029 * 16 15 14 40 40 H 1.07999 * 119.99343 * 307.14776 * 17 16 15 41 41 H 1.07998 * 120.00144 * 188.51061 * 18 17 16 42 42 H 1.07997 * 120.07059 * 359.97438 * 20 19 18 43 43 H 1.08006 * 119.92910 * 179.72969 * 21 20 19 44 44 H 1.07994 * 119.86127 * 179.97438 * 22 21 20 45 45 H 1.07997 * 119.92793 * 180.02562 * 23 22 21 46 46 H 1.08001 * 120.07017 * 180.02562 * 24 23 22 47 47 H 1.09003 * 109.49307 * 60.65001 * 25 15 14 48 48 H 1.09004 * 109.48588 * 180.71267 * 25 15 14 49 49 H 1.09009 * 109.48326 * 296.77895 * 26 12 11 50 50 H 1.09001 * 109.48935 * 56.81851 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5517 -2.6364 0.0009 12 7 6.0413 -4.0214 0.0014 13 6 7.4907 -4.0675 -0.2368 14 6 7.9471 -5.5267 -0.3080 15 7 7.6007 -6.2074 0.9475 16 6 8.0905 -7.5924 0.9480 17 6 7.9384 -8.1785 2.3280 18 6 7.3035 -9.3305 2.4926 19 6 6.9104 -10.1326 1.3149 20 6 7.7553 -10.2114 0.2071 21 6 7.3828 -10.9622 -0.8887 22 6 6.1748 -11.6364 -0.8908 23 6 5.3330 -11.5632 0.2047 24 6 5.6939 -10.8158 1.3069 25 6 6.1514 -6.1612 1.1857 26 6 5.6950 -4.7021 1.2569 27 1 -0.4850 0.8400 -0.0004 28 1 3.8746 -0.6799 0.8911 29 1 3.8753 -0.6803 -0.8889 30 1 3.6587 -3.1501 -0.8892 31 1 3.6580 -3.1505 0.8907 32 1 5.9149 -2.1226 0.8909 33 1 5.9149 -2.1224 -0.8890 34 1 8.0096 -3.5636 0.5786 35 1 7.7207 -3.5683 -1.1782 36 1 9.0264 -5.5634 -0.4558 37 1 7.4487 -6.0234 -1.1405 38 1 9.1419 -7.6060 0.6612 39 1 7.5123 -8.1824 0.2369 40 1 8.3467 -7.6599 3.1828 41 1 7.0735 -9.6830 3.4872 42 1 8.6988 -9.6858 0.2077 43 1 8.0338 -11.0205 -1.7485 44 1 5.8876 -12.2224 -1.7513 45 1 4.3915 -12.0922 0.1971 46 1 5.0361 -10.7599 2.1617 47 1 5.6325 -6.6651 0.3703 48 1 5.9215 -6.6604 2.1271 49 1 6.1935 -4.2053 2.0894 50 1 4.6157 -4.6650 1.4049 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255625563.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:27 Heat of formation + Delta-G solvation = 31.303306 kcal Electronic energy + Delta-G solvation = -25455.143234 eV Core-core repulsion = 22060.444162 eV Total energy + Delta-G solvation = -3394.699072 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.69055 -39.97127 -37.59887 -35.88249 -34.87435 -33.37716 -31.94074 -31.89466 -30.79085 -29.49600 -27.56068 -25.43674 -24.63954 -23.62871 -23.38955 -22.88753 -21.61726 -20.73841 -20.07046 -18.90176 -17.71998 -17.10432 -16.71947 -16.36618 -16.34320 -16.07788 -15.93268 -15.61700 -15.52779 -15.20588 -14.99507 -14.74143 -14.57640 -14.23602 -14.10367 -13.69692 -13.48801 -13.37410 -13.27758 -12.87465 -12.77730 -12.55970 -12.37670 -12.24971 -12.10344 -11.98866 -11.84660 -11.73297 -11.67561 -11.41510 -11.36006 -11.16904 -10.76135 -10.67492 -9.87565 -9.41889 -9.26786 -9.03473 -8.29439 -6.33868 0.11094 0.49733 1.35902 1.38094 1.42315 1.50370 2.36572 2.88792 2.93716 3.01664 3.05696 3.82153 3.90452 3.94766 4.00206 4.07056 4.10404 4.19948 4.22472 4.27408 4.32149 4.43395 4.46158 4.51398 4.56375 4.58490 4.63011 4.67418 4.71872 4.81758 4.84977 4.91751 4.93269 4.94255 4.97486 5.07188 5.09242 5.15187 5.17782 5.44300 5.46162 5.50954 5.59744 5.62115 5.66149 5.69293 5.77529 5.98707 6.03581 6.11543 6.18511 6.22231 6.30499 6.74299 7.30650 8.87714 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.018278 B = 0.002322 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.498831 B =12054.742343 C =12800.572184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.245 1.245 7 C -0.533 4.533 8 H 0.027 0.973 9 C -0.009 4.009 10 C -0.087 4.087 11 C 0.067 3.933 12 N -0.551 5.551 13 C 0.056 3.944 14 C 0.063 3.937 15 N -0.540 5.540 16 C 0.070 3.930 17 C -0.129 4.129 18 C -0.128 4.128 19 C -0.071 4.071 20 C -0.119 4.119 21 C -0.132 4.132 22 C -0.131 4.131 23 C -0.132 4.132 24 C -0.125 4.125 25 C 0.073 3.927 26 C 0.056 3.944 27 H 0.266 0.734 28 H 0.019 0.981 29 H 0.021 0.979 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.033 0.967 38 H 0.096 0.904 39 H 0.050 0.950 40 H 0.128 0.872 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.130 0.870 47 H 0.025 0.975 48 H 0.083 0.917 49 H 0.037 0.963 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.735 -22.393 1.694 31.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.571 4.571 8 H 0.046 0.954 9 C -0.047 4.047 10 C -0.125 4.125 11 C -0.061 4.061 12 N -0.276 5.276 13 C -0.072 4.072 14 C -0.065 4.065 15 N -0.265 5.265 16 C -0.056 4.056 17 C -0.147 4.147 18 C -0.147 4.147 19 C -0.071 4.071 20 C -0.137 4.137 21 C -0.150 4.150 22 C -0.149 4.149 23 C -0.150 4.150 24 C -0.143 4.143 25 C -0.056 4.056 26 C -0.072 4.072 27 H 0.075 0.925 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.051 0.949 38 H 0.114 0.886 39 H 0.068 0.932 40 H 0.146 0.854 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.154 0.846 46 H 0.148 0.852 47 H 0.043 0.957 48 H 0.101 0.899 49 H 0.055 0.945 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 22.610 -22.286 1.681 31.791 hybrid contribution -0.672 0.714 0.076 0.984 sum 21.938 -21.571 1.757 30.817 Atomic orbital electron populations 1.70080 1.08394 1.28204 1.52758 1.26086 0.95676 1.03736 0.94057 0.85587 0.79457 0.77865 0.79306 1.18979 1.20937 1.16888 1.21507 0.92277 0.93002 1.50361 0.95413 1.19485 0.93765 0.94925 0.96497 1.21279 0.93962 0.96822 1.00454 1.22050 0.94954 0.88267 1.00797 1.62148 1.14618 1.16056 1.34760 1.22220 0.86608 0.96862 1.01463 1.22160 1.01286 0.93248 0.89833 1.62136 1.13382 1.16139 1.34857 1.21630 1.01190 0.87453 0.95314 1.23233 0.97597 0.95539 0.98313 1.21824 0.99740 0.95927 0.97205 1.19298 0.94962 0.98001 0.94838 1.21589 1.00115 0.98804 0.93171 1.21393 0.97379 0.97281 0.98921 1.21522 0.94606 0.99824 0.98931 1.21392 1.00484 0.99313 0.93779 1.21516 0.96268 0.97198 0.99321 1.21974 0.87724 0.95209 1.00647 1.22160 1.00345 0.94359 0.90340 0.92484 0.96274 0.96108 0.93565 0.93752 0.94960 0.90225 0.94247 0.89318 0.88106 0.94893 0.88630 0.93211 0.85437 0.84851 0.84832 0.84291 0.84473 0.84617 0.85168 0.95719 0.89880 0.94453 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 2 C 0.00 0.05 5.47 84.65 0.46 0.51 16 3 Si 0.96 45.02 27.47 68.60 1.88 46.91 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 7 C -0.53 -31.89 9.66 25.60 0.25 -31.64 16 8 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 9 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 10 C -0.09 -3.58 5.09 30.60 0.16 -3.42 16 11 C 0.07 2.17 4.96 86.31 0.43 2.60 16 12 N -0.55 -15.99 4.71 -895.69 -4.22 -20.21 16 13 C 0.06 1.29 5.61 86.31 0.48 1.77 16 14 C 0.06 1.23 5.61 86.31 0.48 1.71 16 15 N -0.54 -11.09 4.70 -900.29 -4.23 -15.33 16 16 C 0.07 1.16 3.72 85.56 0.32 1.48 16 17 C -0.13 -1.98 8.52 24.53 0.21 -1.77 16 18 C -0.13 -1.97 9.79 23.66 0.23 -1.74 16 19 C -0.07 -1.23 5.14 -20.12 -0.10 -1.33 16 20 C -0.12 -1.90 7.32 22.52 0.16 -1.74 16 21 C -0.13 -1.98 10.03 22.23 0.22 -1.76 16 22 C -0.13 -1.98 10.04 22.32 0.22 -1.76 16 23 C -0.13 -2.11 10.03 22.23 0.22 -1.89 16 24 C -0.13 -2.16 9.79 22.52 0.22 -1.94 16 25 C 0.07 1.76 5.44 86.31 0.47 2.23 16 26 C 0.06 1.58 5.41 86.31 0.47 2.05 16 27 H 0.27 15.89 8.31 -92.71 -0.77 15.11 16 28 H 0.02 0.89 7.20 -2.39 -0.02 0.88 16 29 H 0.02 0.96 7.57 -2.38 -0.02 0.94 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.86 6.49 -2.39 -0.02 1.85 16 32 H 0.03 1.03 8.12 -2.39 -0.02 1.01 16 33 H 0.08 2.42 8.03 -2.39 -0.02 2.40 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 1.82 8.07 -2.38 -0.02 1.80 16 36 H 0.10 1.49 8.07 -2.39 -0.02 1.47 16 37 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.10 1.27 7.87 -2.39 -0.02 1.25 16 39 H 0.05 0.93 4.83 -2.39 -0.01 0.92 16 40 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 41 H 0.13 1.69 8.06 -2.91 -0.02 1.66 16 42 H 0.13 1.77 6.35 -2.91 -0.02 1.75 16 43 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 45 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 46 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 47 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.08 1.89 7.20 -2.38 -0.02 1.87 16 49 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 50 H 0.07 2.16 6.34 -2.39 -0.02 2.15 16 Total: -1.00 -69.36 388.73 -0.41 -69.77 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.82 Total: 16.79 kcal Atomic # 6 Polarization: -41.97 SS G_CDS: 5.03 Total: -36.94 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -8.15 Total: -96.53 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.91 kcal Total: -69.36 -0.41 -69.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255625563.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.077 kcal (2) G-P(sol) polarization free energy of solvation -69.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds