Wall clock time and date at job start Tue Mar 31 2020 11:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00379 * 2 1 4 4 H 1.48496 * 109.47337 * 240.00070 * 3 2 1 5 5 H 1.48496 * 109.46738 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46904 * 120.00067 * 3 2 1 7 7 C 1.37881 * 119.99541 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99998 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00252 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47254 * 180.02562 * 9 7 2 11 11 C 1.46798 * 111.00124 * 66.04827 * 10 9 7 12 12 C 1.53130 * 109.75061 * 174.50906 * 11 10 9 13 13 C 1.52972 * 109.03070 * 58.90329 * 12 11 10 14 14 H 1.09001 * 109.45353 * 61.47046 * 13 12 11 15 15 C 1.53174 * 108.94068 * 301.83035 * 13 12 11 16 16 H 1.09001 * 109.49786 * 298.91629 * 15 13 12 17 17 C 1.53005 * 109.02950 * 179.04662 * 15 13 12 18 18 C 1.53205 * 108.89123 * 58.24858 * 17 15 13 19 19 C 1.52983 * 109.51350 * 302.60000 * 18 17 15 20 20 N 1.46716 * 110.23567 * 181.90505 * 13 12 11 21 21 C 1.46902 * 110.99900 * 305.93341 * 20 13 12 22 22 C 1.50697 * 109.47196 * 170.00089 * 21 20 13 23 23 C 1.38238 * 120.00082 * 269.72575 * 22 21 20 24 24 C 1.38232 * 120.00090 * 179.76444 * 23 22 21 25 25 C 1.38239 * 119.99874 * 0.48544 * 24 23 22 26 26 C 1.38233 * 119.99955 * 359.78969 * 25 24 23 27 27 C 1.38235 * 120.00101 * 89.99943 * 22 21 20 28 28 C 1.46942 * 110.99977 * 301.51046 * 10 9 7 29 29 H 0.96999 * 119.99958 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47078 * 60.00784 * 9 7 2 31 31 H 1.09000 * 109.47236 * 300.00235 * 9 7 2 32 32 H 1.09000 * 109.42184 * 54.42586 * 11 10 9 33 33 H 1.09004 * 109.41991 * 294.59714 * 11 10 9 34 34 H 1.08993 * 109.54278 * 299.03111 * 12 11 10 35 35 H 1.09003 * 109.53655 * 178.76389 * 12 11 10 36 36 H 1.08996 * 109.56939 * 178.07636 * 17 15 13 37 37 H 1.09006 * 109.56317 * 298.31046 * 17 15 13 38 38 H 1.09005 * 109.46484 * 62.61004 * 18 17 15 39 39 H 1.08995 * 109.46385 * 182.59628 * 18 17 15 40 40 H 1.09002 * 109.41891 * 298.49890 * 19 18 17 41 41 H 1.08996 * 109.42597 * 178.68614 * 19 18 17 42 42 H 1.09003 * 109.47195 * 290.00352 * 21 20 13 43 43 H 1.09004 * 109.47341 * 49.99976 * 21 20 13 44 44 H 1.08005 * 119.99679 * 0.02562 * 23 22 21 45 45 H 1.08006 * 120.00265 * 180.25716 * 24 23 22 46 46 H 1.07999 * 120.00118 * 179.76615 * 25 24 23 47 47 H 1.08000 * 120.00397 * 179.97438 * 26 25 24 48 48 H 1.08000 * 119.99572 * 0.02562 * 27 22 21 49 49 H 1.08999 * 109.50257 * 305.67583 * 28 10 9 50 50 H 1.08995 * 109.50349 * 65.75950 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7463 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 2.9702 -3.6542 1.2519 12 6 3.8556 -4.9033 1.2795 13 6 4.8006 -4.8714 0.0771 14 1 5.4414 -3.9920 0.1421 15 6 3.9689 -4.8026 -1.2073 16 1 3.3372 -5.6880 -1.2796 17 6 4.9126 -4.7466 -2.4104 18 6 5.8128 -5.9862 -2.3927 19 6 6.5791 -6.0424 -1.0699 20 7 5.6314 -6.0805 0.0525 21 6 6.3346 -6.2620 1.3294 22 6 6.9769 -7.6250 1.3598 23 6 6.2784 -8.7071 1.8619 24 6 6.8657 -9.9583 1.8853 25 6 8.1552 -10.1254 1.4159 26 6 8.8557 -9.0422 0.9191 27 6 8.2665 -7.7920 0.8909 28 6 3.0926 -3.5502 -1.1701 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5568 -0.8904 31 1 0.6246 -2.5571 0.8897 32 1 2.2815 -3.6792 2.0965 33 1 3.5961 -2.7645 1.3218 34 1 3.2303 -5.7945 1.2285 35 1 4.4380 -4.9169 2.2008 36 1 4.3297 -4.7319 -3.3313 37 1 5.5256 -3.8472 -2.3519 38 1 5.2000 -6.8817 -2.4958 39 1 6.5203 -5.9330 -3.2202 40 1 7.2121 -5.1595 -0.9799 41 1 7.2015 -6.9369 -1.0491 42 1 7.1030 -5.4959 1.4332 43 1 5.6235 -6.1771 2.1512 44 1 5.2723 -8.5759 2.2319 45 1 6.3185 -10.8046 2.2737 46 1 8.6155 -11.1021 1.4377 47 1 9.8633 -9.1726 0.5528 48 1 8.8139 -6.9456 0.5032 49 1 2.4932 -3.4981 -2.0790 50 1 3.7236 -2.6643 -1.0989 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268963849.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:01 Heat of formation + Delta-G solvation = 7.087837 kcal Electronic energy + Delta-G solvation = -26930.475642 eV Core-core repulsion = 23534.726509 eV Total energy + Delta-G solvation = -3395.749133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.29996 -39.94246 -38.10993 -35.34154 -34.92350 -33.16739 -32.01439 -31.67641 -30.69123 -28.58406 -27.19051 -25.92940 -24.64052 -23.58899 -23.13134 -22.92649 -21.49818 -20.82153 -20.70823 -18.50679 -17.58182 -17.15047 -16.66160 -16.54224 -16.24085 -15.93709 -15.64890 -15.59266 -15.23651 -14.95996 -14.66851 -14.42318 -14.18007 -14.11840 -13.80821 -13.74546 -13.37154 -13.33982 -13.06947 -12.92052 -12.86177 -12.58814 -12.24729 -12.21863 -12.09506 -12.02275 -11.97413 -11.77563 -11.73720 -11.62175 -11.50815 -10.89732 -10.85221 -10.61760 -9.73167 -9.63463 -9.22085 -9.01723 -8.16531 -6.37115 0.48702 0.58103 1.34318 1.35611 1.43964 2.34905 2.73533 3.07285 3.17570 3.33160 3.71920 3.78054 3.93361 3.97905 4.03970 4.17568 4.22748 4.28266 4.31383 4.35350 4.40111 4.44671 4.55857 4.57788 4.69539 4.71260 4.79004 4.80894 4.86215 4.88647 4.89609 4.91237 4.99017 5.08831 5.10565 5.18620 5.23366 5.24803 5.28641 5.30352 5.34851 5.35372 5.56005 5.63534 5.69595 5.72579 5.78585 6.04541 6.12750 6.19212 6.21440 6.25830 6.56517 6.84075 7.34367 8.85236 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.023501 B = 0.002977 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.141997 B = 9402.429265 C = 9664.784557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.557 4.557 8 H 0.054 0.946 9 C 0.202 3.798 10 N -0.543 5.543 11 C 0.068 3.932 12 C -0.098 4.098 13 C 0.101 3.899 14 H 0.022 0.978 15 C -0.065 4.065 16 H 0.075 0.925 17 C -0.114 4.114 18 C -0.106 4.106 19 C 0.053 3.947 20 N -0.525 5.525 21 C 0.087 3.913 22 C -0.083 4.083 23 C -0.113 4.113 24 C -0.129 4.129 25 C -0.128 4.128 26 C -0.127 4.127 27 C -0.124 4.124 28 C 0.078 3.922 29 H 0.266 0.734 30 H 0.004 0.996 31 H 0.005 0.995 32 H 0.059 0.941 33 H 0.014 0.986 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.027 0.973 41 H 0.086 0.914 42 H 0.039 0.961 43 H 0.089 0.911 44 H 0.123 0.877 45 H 0.136 0.864 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.124 0.876 49 H 0.054 0.946 50 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.738 -18.785 0.694 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.596 4.596 8 H 0.072 0.928 9 C 0.075 3.925 10 N -0.266 5.266 11 C -0.061 4.061 12 C -0.136 4.136 13 C -0.007 4.007 14 H 0.040 0.960 15 C -0.084 4.084 16 H 0.094 0.906 17 C -0.152 4.152 18 C -0.144 4.144 19 C -0.074 4.074 20 N -0.249 5.249 21 C -0.040 4.040 22 C -0.083 4.083 23 C -0.132 4.132 24 C -0.146 4.146 25 C -0.146 4.146 26 C -0.145 4.145 27 C -0.143 4.143 28 C -0.051 4.051 29 H 0.075 0.925 30 H 0.022 0.978 31 H 0.023 0.977 32 H 0.078 0.922 33 H 0.032 0.968 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.046 0.954 41 H 0.105 0.895 42 H 0.058 0.942 43 H 0.107 0.893 44 H 0.141 0.859 45 H 0.154 0.846 46 H 0.158 0.842 47 H 0.157 0.843 48 H 0.142 0.858 49 H 0.073 0.927 50 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 17.997 -19.502 0.599 26.544 hybrid contribution 0.679 2.875 0.216 2.962 sum 18.676 -16.628 0.815 25.019 Atomic orbital electron populations 1.70056 1.07549 1.27972 1.50936 1.25817 0.95620 1.02806 0.94512 0.85647 0.78486 0.78892 0.78923 1.19502 1.20512 1.19539 1.21936 0.93235 0.93015 1.51413 0.92780 1.19378 0.91172 0.86712 0.95258 1.62309 1.17755 1.44115 1.02417 1.21850 0.95477 0.96342 0.92394 1.21646 0.96826 0.97725 0.97384 1.21450 0.93554 0.89981 0.95746 0.96045 1.21113 0.95573 0.97362 0.94362 0.90630 1.21592 0.97554 0.98448 0.97584 1.21518 0.98560 0.97707 0.96607 1.22209 0.93772 1.00766 0.90664 1.62023 1.22849 1.37090 1.02908 1.21144 0.96817 0.93294 0.92713 1.19772 0.94428 0.95026 0.99093 1.21196 0.99856 0.92728 0.99378 1.21417 0.95917 0.97373 0.99936 1.21452 0.94847 0.99708 0.98610 1.21386 1.00759 0.92557 0.99794 1.21214 0.94816 0.98186 1.00060 1.21840 0.94020 0.95937 0.93324 0.92541 0.97818 0.97725 0.92212 0.96772 0.90644 0.90219 0.91205 0.92887 0.91388 0.89754 0.95443 0.89534 0.94249 0.89275 0.85941 0.84580 0.84204 0.84313 0.85828 0.92706 0.96594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 2 C 0.01 0.68 5.46 84.66 0.46 1.14 16 3 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.56 -31.45 7.74 25.60 0.20 -31.25 16 8 H 0.05 3.02 5.86 -2.91 -0.02 3.00 16 9 C 0.20 10.91 5.13 85.56 0.44 11.35 16 10 N -0.54 -24.13 4.84 -900.91 -4.36 -28.49 16 11 C 0.07 2.70 5.14 86.37 0.44 3.14 16 12 C -0.10 -2.98 4.95 30.63 0.15 -2.83 16 13 C 0.10 2.95 1.70 45.00 0.08 3.03 16 14 H 0.02 0.69 8.14 -2.39 -0.02 0.68 16 15 C -0.06 -2.03 2.26 -10.77 -0.02 -2.06 16 16 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 17 C -0.11 -2.95 5.33 30.66 0.16 -2.78 16 18 C -0.11 -2.24 6.08 30.66 0.19 -2.05 16 19 C 0.05 1.15 5.15 86.29 0.44 1.59 16 20 N -0.52 -12.78 4.51 -875.61 -3.95 -16.73 16 21 C 0.09 1.89 4.85 85.56 0.41 2.30 16 22 C -0.08 -1.65 4.90 -19.87 -0.10 -1.75 16 23 C -0.11 -2.19 9.70 22.27 0.22 -1.97 16 24 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 25 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 26 C -0.13 -1.92 10.05 22.27 0.22 -1.69 16 27 C -0.12 -2.18 7.89 22.27 0.18 -2.01 16 28 C 0.08 3.12 4.35 86.26 0.38 3.49 16 29 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.00 0.27 8.06 -2.39 -0.02 0.25 16 32 H 0.06 2.40 8.06 -2.39 -0.02 2.38 16 33 H 0.01 0.61 7.01 -2.38 -0.02 0.59 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.08 2.08 6.31 -2.39 -0.02 2.06 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.09 1.70 5.78 -2.39 -0.01 1.69 16 42 H 0.04 0.85 8.06 -2.39 -0.02 0.83 16 43 H 0.09 1.93 5.70 -2.39 -0.01 1.91 16 44 H 0.12 2.29 8.06 -2.91 -0.02 2.27 16 45 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 46 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 47 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 48 H 0.12 1.92 7.96 -2.91 -0.02 1.90 16 49 H 0.05 2.28 8.13 -2.39 -0.02 2.26 16 50 H 0.02 0.70 6.59 -2.39 -0.02 0.68 16 Total: -1.00 -63.43 375.60 -0.82 -64.25 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.89 Total: 15.98 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 4.30 Total: -25.86 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -8.03 Total: -100.73 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -63.43 -0.82 -64.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268963849.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.339 kcal (2) G-P(sol) polarization free energy of solvation -63.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds