Wall clock time and date at job start Tue Mar 31 2020 10:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00043 * 2 1 4 4 H 1.48499 * 109.47179 * 239.99472 * 3 2 1 5 5 H 1.48497 * 109.47401 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46808 * 119.99909 * 3 2 1 7 7 C 1.37875 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99895 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00020 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46904 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46932 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.46939 * 180.02562 * 11 10 9 13 13 C 1.46848 * 110.99910 * 170.00166 * 12 11 10 14 14 C 1.53034 * 109.52650 * 185.83758 * 13 12 11 15 15 C 1.53113 * 109.27883 * 300.82645 * 14 13 12 16 16 N 1.46904 * 109.52533 * 177.55556 * 15 14 13 17 17 C 1.47910 * 111.00477 * 179.86073 * 16 15 14 18 18 C 1.54595 * 102.62692 * 265.41946 * 17 16 15 19 19 C 1.51579 * 102.82833 * 334.44067 * 18 17 16 20 20 C 1.37926 * 131.56096 * 196.20764 * 19 18 17 21 21 C 1.38300 * 120.07603 * 179.61055 * 20 19 18 22 22 C 1.38306 * 119.88814 * 359.97438 * 21 20 19 23 23 C 1.37908 * 120.25990 * 0.14310 * 22 21 20 24 24 C 1.38958 * 107.95229 * 16.03831 * 19 18 17 25 25 C 1.53120 * 109.16310 * 57.65224 * 15 14 13 26 26 C 1.46849 * 111.00391 * 294.21167 * 12 11 10 27 27 H 0.97008 * 119.99560 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46910 * 59.99972 * 9 7 2 29 29 H 1.08999 * 109.47109 * 300.00024 * 9 7 2 30 30 H 1.09004 * 109.46819 * 60.00136 * 10 9 7 31 31 H 1.08997 * 109.47167 * 300.00503 * 10 9 7 32 32 H 1.09004 * 109.47033 * 60.00542 * 11 10 9 33 33 H 1.08999 * 109.47320 * 300.00355 * 11 10 9 34 34 H 1.09008 * 109.46223 * 65.82324 * 13 12 11 35 35 H 1.09000 * 109.45749 * 305.85278 * 13 12 11 36 36 H 1.09000 * 109.50885 * 180.87661 * 14 13 12 37 37 H 1.09005 * 109.49811 * 60.76364 * 14 13 12 38 38 H 1.09004 * 109.52521 * 297.68070 * 15 14 13 39 39 H 1.08998 * 110.77246 * 23.69810 * 17 16 15 40 40 H 1.08992 * 110.77814 * 146.94258 * 17 16 15 41 41 H 1.08999 * 110.74323 * 92.77453 * 18 17 16 42 42 H 1.08999 * 110.74393 * 216.10879 * 18 17 16 43 43 H 1.07998 * 119.95644 * 359.58214 * 20 19 18 44 44 H 1.08004 * 120.05298 * 179.97438 * 21 20 19 45 45 H 1.07991 * 119.86903 * 180.15449 * 22 21 20 46 46 H 1.08005 * 119.89783 * 180.19815 * 23 22 21 47 47 H 1.08993 * 109.50443 * 62.28618 * 25 15 14 48 48 H 1.09010 * 109.50129 * 182.40730 * 25 15 14 49 49 H 1.09001 * 109.45910 * 294.18208 * 26 12 11 50 50 H 1.09001 * 109.45833 * 54.15355 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4346 -6.1037 0.0018 13 6 1.7503 -7.3809 0.2404 14 6 2.7867 -8.4983 0.3792 15 6 3.6206 -8.5763 -0.9025 16 7 4.6554 -9.6082 -0.7529 17 6 5.4798 -9.7136 -1.9765 18 6 4.7857 -10.8551 -2.7544 19 6 4.1146 -11.6528 -1.6539 20 6 3.5896 -12.9281 -1.6381 21 6 3.0288 -13.4325 -0.4789 22 6 2.9956 -12.6559 0.6651 23 6 3.5170 -11.3793 0.6539 24 6 4.0820 -10.8628 -0.5112 25 6 4.2838 -7.2193 -1.1540 26 6 3.2040 -6.1391 -1.2485 27 1 -0.4850 0.8402 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 2.8717 -3.6044 0.8906 31 1 2.8718 -3.6044 -0.8894 32 1 0.8531 -5.0451 -0.8887 33 1 0.8536 -5.0446 0.8913 34 1 1.0891 -7.6008 -0.5978 35 1 1.1644 -7.3131 1.1571 36 1 2.2779 -9.4486 0.5408 37 1 3.4396 -8.2859 1.2258 38 1 2.9740 -8.8282 -1.7431 39 1 5.4490 -8.7840 -2.5447 40 1 6.5073 -9.9797 -1.7286 41 1 4.0456 -10.4555 -3.4477 42 1 5.5195 -11.4654 -3.2809 43 1 3.6162 -13.5333 -2.5322 44 1 2.6174 -14.4310 -0.4670 45 1 2.5599 -13.0510 1.5708 46 1 3.4909 -10.7791 1.5514 47 1 4.9603 -6.9869 -0.3316 48 1 4.8446 -7.2559 -2.0881 49 1 2.5360 -6.3648 -2.0797 50 1 3.6739 -5.1694 -1.4132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282034496.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:51 Heat of formation + Delta-G solvation = 33.050275 kcal Electronic energy + Delta-G solvation = -26020.585381 eV Core-core repulsion = 22625.962064 eV Total energy + Delta-G solvation = -3394.623317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.31824 -38.80365 -36.95874 -34.55784 -33.15176 -31.91364 -31.23327 -30.34225 -29.23409 -28.74236 -26.31134 -23.99215 -23.74557 -22.93307 -22.12023 -21.25571 -20.90249 -19.81556 -19.68622 -17.06552 -16.46441 -16.22048 -15.94871 -15.73062 -15.00941 -14.95798 -14.56469 -14.43391 -14.24400 -14.11929 -13.56247 -13.42108 -13.30951 -12.96481 -12.83864 -12.74110 -12.24551 -12.08075 -11.89972 -11.76419 -11.48800 -11.38949 -11.20698 -11.08885 -10.98975 -10.79118 -10.73107 -10.65798 -10.48146 -10.21691 -9.64611 -9.53976 -9.29499 -9.05992 -9.01763 -8.31295 -8.11667 -8.03362 -5.96857 -3.98799 1.05253 1.12857 3.30592 3.35543 3.39550 3.42393 3.51369 4.12498 4.25248 4.43830 4.49305 4.63541 4.67363 4.75752 4.77777 4.84853 5.04492 5.13213 5.15249 5.22655 5.28848 5.33064 5.38774 5.40318 5.43197 5.56064 5.58447 5.60819 5.65447 5.70577 5.84252 5.84806 5.89793 6.02379 6.08630 6.12334 6.14384 6.20558 6.25945 6.30703 6.35247 6.49060 6.73511 6.76828 6.81414 7.06483 7.15938 7.40503 7.43582 7.71570 7.86934 8.03779 8.47149 9.08243 9.64914 11.14556 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.031656 B = 0.002221 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.302731 B =12604.524009 C =13112.465935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.104 4.104 11 C 0.057 3.943 12 N -0.537 5.537 13 C 0.057 3.943 14 C -0.113 4.113 15 C 0.090 3.910 16 N -0.488 5.488 17 C 0.044 3.956 18 C -0.110 4.110 19 C -0.143 4.143 20 C -0.091 4.091 21 C -0.136 4.136 22 C -0.106 4.106 23 C -0.111 4.111 24 C 0.098 3.902 25 C -0.110 4.110 26 C 0.055 3.945 27 H 0.260 0.740 28 H 0.013 0.987 29 H 0.015 0.985 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.027 0.973 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.118 0.882 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.083 0.917 48 H 0.065 0.935 49 H 0.027 0.973 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.889 -27.965 -3.607 29.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.142 4.142 11 C -0.070 4.070 12 N -0.262 5.262 13 C -0.071 4.071 14 C -0.151 4.151 15 C -0.015 4.015 16 N -0.205 5.205 17 C -0.082 4.082 18 C -0.148 4.148 19 C -0.145 4.145 20 C -0.110 4.110 21 C -0.154 4.154 22 C -0.125 4.125 23 C -0.131 4.131 24 C 0.002 3.998 25 C -0.148 4.148 26 C -0.074 4.074 27 H 0.070 0.930 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.136 0.864 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.144 0.856 47 H 0.101 0.899 48 H 0.084 0.916 49 H 0.046 0.954 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.389 -27.536 -2.800 28.922 hybrid contribution -0.646 0.518 -1.342 1.578 sum 7.743 -27.018 -4.143 28.409 Atomic orbital electron populations 1.69965 1.06048 1.26620 1.51018 1.25034 0.94858 0.99247 0.95433 0.86656 0.79567 0.83146 0.78619 1.20293 1.21345 1.20209 1.21217 0.93005 0.91053 1.50341 0.92734 1.19072 0.94048 0.91425 0.97042 1.21654 0.99122 0.92688 1.00753 1.22281 0.93642 0.90939 1.00172 1.62013 1.26802 1.02887 1.34458 1.22036 0.95028 0.89419 1.00644 1.21801 0.97566 0.98011 0.97683 1.21789 0.91188 0.90774 0.97775 1.60249 1.21128 1.03486 1.35639 1.23251 0.97680 0.98624 0.88686 1.21688 0.99603 0.96782 0.96771 1.21032 1.02027 0.96093 0.95395 1.20387 0.98212 0.94095 0.98311 1.21034 1.01258 1.00083 0.93063 1.20955 0.99378 0.93682 0.98455 1.20629 1.00080 0.95693 0.96690 1.19555 0.95873 0.90652 0.93710 1.21759 0.98282 0.92418 1.02307 1.22100 0.95304 0.99634 0.90325 0.93018 0.96906 0.96619 0.92555 0.93499 0.95460 0.91196 0.95502 0.90479 0.91379 0.90074 0.94000 0.89075 0.89276 0.90234 0.89719 0.86407 0.85918 0.85640 0.85550 0.89852 0.91622 0.95444 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.19 5.08 -26.73 -0.14 -2.32 16 11 C 0.06 1.00 4.96 -3.83 -0.02 0.98 16 12 N -0.54 -8.13 4.66 -234.67 -1.09 -9.23 16 13 C 0.06 0.74 5.46 -3.83 -0.02 0.72 16 14 C -0.11 -1.29 4.63 -26.66 -0.12 -1.42 16 15 C 0.09 1.00 1.82 -67.59 -0.12 0.88 16 16 N -0.49 -5.21 4.92 -161.36 -0.79 -6.01 16 17 C 0.04 0.38 6.72 -2.43 -0.02 0.37 16 18 C -0.11 -0.89 6.97 -26.61 -0.19 -1.08 16 19 C -0.14 -1.40 6.23 -104.04 -0.65 -2.05 16 20 C -0.09 -0.80 10.03 -39.67 -0.40 -1.19 16 21 C -0.14 -1.10 10.06 -39.53 -0.40 -1.49 16 22 C -0.11 -0.89 10.02 -39.68 -0.40 -1.29 16 23 C -0.11 -1.09 8.07 -39.27 -0.32 -1.41 16 24 C 0.10 1.05 5.19 -83.41 -0.43 0.62 16 25 C -0.11 -1.26 5.22 -26.65 -0.14 -1.39 16 26 C 0.05 0.75 5.29 -3.84 -0.02 0.73 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.05 0.96 6.43 -51.93 -0.33 0.63 16 32 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 33 H 0.07 1.23 7.99 -51.93 -0.41 0.82 16 34 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 35 H 0.08 0.97 8.01 -51.93 -0.42 0.55 16 36 H 0.07 0.73 5.70 -51.93 -0.30 0.44 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.71 5.66 -51.93 -0.29 0.41 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 45 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.13 1.17 7.36 -52.48 -0.39 0.78 16 47 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.07 0.64 6.14 -51.92 -0.32 0.32 16 49 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.09 1.30 6.21 -51.93 -0.32 0.97 16 LS Contribution 380.45 15.07 5.73 5.73 Total: -1.00 -31.06 380.45 -13.03 -44.08 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -8.66 Total: -2.33 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -3.92 Total: -22.60 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: -1.15 Total: -41.78 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.06 -13.03 -44.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282034496.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.133 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds