Wall clock time and date at job start Tue Mar 31 2020 10:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99826 * 2 1 4 4 H 1.48504 * 109.46881 * 269.99887 * 3 2 1 5 5 H 1.48500 * 109.47045 * 29.99680 * 3 2 1 6 6 H 1.48501 * 109.47456 * 149.99921 * 3 2 1 7 7 C 1.37880 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99682 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99782 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46732 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47393 * 55.00020 * 10 9 7 12 12 N 1.46899 * 109.47032 * 294.99872 * 10 9 7 13 13 C 1.46902 * 110.99782 * 155.00339 * 12 10 9 14 14 C 1.53126 * 109.52095 * 154.99935 * 13 12 10 15 15 C 1.53034 * 109.27454 * 177.55756 * 14 13 12 16 16 N 1.46845 * 109.52676 * 300.81918 * 15 14 13 17 17 C 1.46898 * 111.00565 * 185.84030 * 16 15 14 18 18 C 1.53001 * 117.49837 * 124.40974 * 17 16 15 19 19 C 1.53003 * 60.00276 * 252.51551 * 18 17 16 20 20 C 1.46850 * 111.19654 * 61.74248 * 16 15 14 21 21 C 1.53033 * 109.52490 * 298.25970 * 20 16 15 22 22 C 1.50706 * 109.46850 * 175.00208 * 10 9 7 23 23 C 1.38233 * 120.00144 * 79.72719 * 22 10 9 24 24 C 1.38238 * 119.99965 * 179.78918 * 23 22 10 25 25 C 1.38236 * 119.99759 * 0.43570 * 24 23 22 26 26 C 1.38231 * 119.99959 * 359.81658 * 25 24 23 27 27 C 1.38235 * 119.99447 * 259.99637 * 22 10 9 28 28 H 0.96995 * 120.00241 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47067 * 60.00384 * 9 7 2 30 30 H 1.08996 * 109.47478 * 300.00075 * 9 7 2 31 31 H 1.00900 * 111.00024 * 31.04700 * 12 10 9 32 32 H 1.08993 * 109.57644 * 34.84113 * 13 12 10 33 33 H 1.08997 * 109.50129 * 297.50058 * 14 13 12 34 34 H 1.09006 * 109.50177 * 57.61816 * 14 13 12 35 35 H 1.08995 * 109.46502 * 60.83953 * 15 14 13 36 36 H 1.09005 * 109.46032 * 180.80589 * 15 14 13 37 37 H 1.08996 * 115.55039 * 270.12528 * 17 16 15 38 38 H 1.08997 * 117.50322 * 0.02562 * 18 17 16 39 39 H 1.09008 * 117.49654 * 145.02577 * 18 17 16 40 40 H 1.08996 * 117.49968 * 252.51332 * 19 18 17 41 41 H 1.09000 * 117.49626 * 107.48854 * 19 18 17 42 42 H 1.09005 * 109.46186 * 178.24176 * 20 16 15 43 43 H 1.09004 * 109.45360 * 58.27331 * 20 16 15 44 44 H 1.09004 * 109.50318 * 299.23790 * 21 20 16 45 45 H 1.08999 * 109.53400 * 179.13825 * 21 20 16 46 46 H 1.08000 * 120.00171 * 359.97438 * 23 22 10 47 47 H 1.07997 * 120.00141 * 180.27349 * 24 23 22 48 48 H 1.07997 * 119.99869 * 179.83375 * 25 24 23 49 49 H 1.08001 * 120.00096 * 180.02562 * 26 25 24 50 50 H 1.07997 * 120.00791 * 359.97438 * 27 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 1 3.5873 -3.1754 -0.8411 12 7 3.6325 -3.2935 1.2559 13 6 3.5538 -4.7504 1.0850 14 6 3.7697 -5.4366 2.4367 15 6 3.6262 -6.9503 2.2635 16 7 2.2877 -7.2603 1.7453 17 6 2.0648 -8.7115 1.6969 18 6 0.8437 -9.2637 2.4350 19 6 2.2475 -9.4980 2.9966 20 6 2.0747 -6.6510 0.4262 21 6 2.1719 -5.1283 0.5446 22 6 5.5236 -2.6382 -0.1222 23 6 6.3085 -2.3916 0.9886 24 6 7.6863 -2.3975 0.8765 25 6 8.2790 -2.6411 -0.3484 26 6 7.4940 -2.8824 -1.4603 27 6 6.1162 -2.8808 -1.3473 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6800 0.8911 30 1 3.8753 -0.6803 -0.8888 31 1 2.7608 -2.9225 1.6032 32 1 4.3212 -5.0778 0.3836 33 1 4.7687 -5.2057 2.8066 34 1 3.0258 -5.0797 3.1490 35 1 4.3793 -7.3086 1.5617 36 1 3.7652 -7.4409 3.2269 37 1 2.3554 -9.2010 0.7673 38 1 0.2054 -8.5502 2.9562 39 1 0.3304 -10.1167 1.9909 40 1 2.6578 -10.5050 2.9220 41 1 2.5330 -8.9385 3.8874 42 1 1.0868 -6.9241 0.0552 43 1 2.8352 -7.0107 -0.2669 44 1 1.4028 -4.7665 1.2271 45 1 2.0290 -4.6766 -0.4371 46 1 5.8454 -2.1974 1.9447 47 1 8.2996 -2.2093 1.7452 48 1 9.3554 -2.6430 -0.4366 49 1 7.9570 -3.0731 -2.4172 50 1 5.5030 -3.0696 -2.2160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297289601.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:54 Heat of formation + Delta-G solvation = 46.552647 kcal Electronic energy + Delta-G solvation = -26675.584319 eV Core-core repulsion = 23281.546508 eV Total energy + Delta-G solvation = -3394.037811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.53779 -38.85048 -36.96533 -35.13217 -32.76135 -31.74632 -30.69222 -30.49629 -29.50126 -28.24973 -24.72917 -23.37145 -22.80639 -22.11210 -22.00019 -21.67312 -20.68174 -19.75460 -19.30170 -16.98530 -16.77288 -16.21930 -15.33443 -15.02645 -14.82330 -14.78064 -14.56222 -14.22134 -13.84987 -13.56750 -13.36239 -13.24771 -12.96742 -12.66548 -12.51536 -12.39593 -12.24818 -12.09393 -11.70041 -11.54257 -11.33052 -11.05655 -11.00702 -10.95638 -10.66589 -10.58933 -10.48587 -10.40833 -10.12502 -10.04125 -9.88248 -9.74502 -9.25520 -8.59130 -8.52244 -8.27864 -8.19076 -7.72704 -6.09620 -4.08745 1.76577 1.82023 3.29488 3.37666 3.42837 3.65000 3.77725 4.20323 4.42288 4.70197 4.80284 4.85260 4.97330 5.06810 5.19062 5.24065 5.26009 5.28139 5.33231 5.40349 5.45520 5.51004 5.55761 5.57221 5.61605 5.74014 5.80938 5.87082 5.92552 5.96558 5.97484 6.04500 6.08100 6.12072 6.28138 6.30008 6.34764 6.44142 6.51906 6.57896 6.64798 6.82046 6.88067 7.12059 7.13608 7.14018 7.17440 7.25703 7.42019 7.70996 7.86843 8.20430 8.43707 8.91872 9.52891 11.02882 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.009807 B = 0.004427 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.330289 B = 6323.570561 C = 8538.905332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.073 0.927 9 C -0.009 4.009 10 C 0.137 3.863 11 H 0.046 0.954 12 N -0.675 5.675 13 C 0.092 3.908 14 C -0.102 4.102 15 C 0.060 3.940 16 N -0.510 5.510 17 C 0.006 3.994 18 C -0.164 4.164 19 C -0.177 4.177 20 C 0.067 3.933 21 C -0.144 4.144 22 C -0.057 4.057 23 C -0.088 4.088 24 C -0.130 4.130 25 C -0.137 4.137 26 C -0.128 4.128 27 C -0.124 4.124 28 H 0.263 0.737 29 H 0.027 0.973 30 H 0.017 0.983 31 H 0.363 0.637 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.029 0.971 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.129 0.871 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.113 0.887 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.075 -15.001 2.742 18.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.129 4.129 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.047 4.047 10 C 0.027 3.973 11 H 0.064 0.936 12 N -0.308 5.308 13 C -0.019 4.019 14 C -0.141 4.141 15 C -0.068 4.068 16 N -0.234 5.234 17 C -0.103 4.103 18 C -0.202 4.202 19 C -0.215 4.215 20 C -0.062 4.062 21 C -0.184 4.184 22 C -0.058 4.058 23 C -0.107 4.107 24 C -0.149 4.149 25 C -0.155 4.155 26 C -0.146 4.146 27 C -0.143 4.143 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.035 0.965 31 H 0.185 0.815 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.090 0.910 43 H 0.047 0.953 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.147 0.853 47 H 0.131 0.869 48 H 0.129 0.871 49 H 0.131 0.869 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.205 -14.648 3.322 18.159 hybrid contribution 0.117 0.505 -1.279 1.380 sum 10.322 -14.143 2.042 17.628 Atomic orbital electron populations 1.69903 1.06279 1.26980 1.50557 1.24955 0.94628 0.99070 0.94259 0.86828 0.80538 0.83744 0.78511 1.20421 1.21420 1.18817 1.21034 0.89059 0.94458 1.51647 0.90882 1.19737 0.97046 0.90737 0.97164 1.20381 0.88548 0.97432 0.90902 0.93640 1.60541 1.39834 1.01891 1.28541 1.21532 0.95063 0.89325 0.95963 1.21550 1.02148 0.92455 0.97905 1.22084 0.88319 0.96992 0.99363 1.61726 1.28455 1.07418 1.25837 1.22393 1.04060 0.88404 0.95470 1.23055 0.91112 1.02423 1.03588 1.23041 1.00598 1.00522 0.97299 1.22010 1.00494 0.95276 0.88381 1.22332 0.99423 0.94065 1.02562 1.20253 0.96590 0.96153 0.92754 1.21069 0.92553 0.97748 0.99284 1.21138 0.95214 1.01308 0.97197 1.20987 0.99058 1.02141 0.93334 1.20985 0.93857 1.01579 0.98163 1.21069 0.94612 1.01167 0.97443 0.92685 0.95458 0.96506 0.81472 0.91782 0.91201 0.91085 0.95308 0.90952 0.89670 0.88092 0.89055 0.88973 0.88335 0.90971 0.95307 0.90541 0.91105 0.85312 0.86856 0.87075 0.86922 0.86650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.96 55.43 0.77 -26.00 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -13.93 8.67 -34.44 -0.30 -14.23 16 8 H 0.07 2.06 7.73 -52.48 -0.41 1.65 16 9 C -0.01 -0.21 3.62 -27.88 -0.10 -0.31 16 10 C 0.14 2.63 2.01 -68.86 -0.14 2.49 16 11 H 0.05 0.91 7.02 -51.93 -0.36 0.54 16 12 N -0.68 -11.94 5.31 -100.82 -0.54 -12.47 16 13 C 0.09 1.41 2.34 -67.58 -0.16 1.25 16 14 C -0.10 -1.39 5.70 -26.65 -0.15 -1.54 16 15 C 0.06 0.74 5.34 -3.84 -0.02 0.72 16 16 N -0.51 -6.50 4.80 -226.69 -1.09 -7.58 16 17 C 0.01 0.06 5.30 -67.71 -0.36 -0.30 16 18 C -0.16 -1.60 10.46 -26.73 -0.28 -1.88 16 19 C -0.18 -1.63 9.70 -26.73 -0.26 -1.89 16 20 C 0.07 0.90 5.43 -3.83 -0.02 0.88 16 21 C -0.14 -2.25 5.34 -26.65 -0.14 -2.39 16 22 C -0.06 -0.99 4.61 -104.62 -0.48 -1.47 16 23 C -0.09 -1.45 9.32 -39.58 -0.37 -1.82 16 24 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 25 C -0.14 -1.86 10.05 -39.58 -0.40 -2.26 16 26 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 27 C -0.12 -1.99 9.67 -39.58 -0.38 -2.37 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 29 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 30 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 31 H 0.36 7.21 6.92 -39.29 -0.27 6.94 16 32 H 0.06 1.03 7.64 -51.93 -0.40 0.63 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.80 6.68 -51.93 -0.35 0.46 16 37 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.09 0.76 8.14 -51.92 -0.42 0.33 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.94 7.23 -51.93 -0.38 0.56 16 42 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 43 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 45 H 0.07 1.20 7.49 -51.93 -0.39 0.82 16 46 H 0.13 2.15 7.73 -52.49 -0.41 1.75 16 47 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 48 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 49 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 50 H 0.12 1.74 8.04 -52.49 -0.42 1.32 16 LS Contribution 390.44 15.07 5.88 5.88 Total: -1.00 -28.24 390.44 -12.89 -41.13 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -8.80 Total: 9.95 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: -4.45 Total: -27.66 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -0.85 Total: -46.06 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.24 -12.89 -41.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297289601.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.687 kcal (2) G-P(sol) polarization free energy of solvation -28.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds