Wall clock time and date at job start Tue Mar 31 2020 10:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99826 * 2 1 4 4 H 1.48504 * 109.46881 * 269.99887 * 3 2 1 5 5 H 1.48500 * 109.47045 * 29.99680 * 3 2 1 6 6 H 1.48501 * 109.47456 * 149.99921 * 3 2 1 7 7 C 1.37880 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99682 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99782 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46732 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47393 * 55.00020 * 10 9 7 12 12 N 1.46899 * 109.47032 * 294.99872 * 10 9 7 13 13 C 1.46902 * 110.99782 * 155.00339 * 12 10 9 14 14 C 1.53126 * 109.52095 * 154.99935 * 13 12 10 15 15 C 1.53034 * 109.27454 * 177.55756 * 14 13 12 16 16 N 1.46845 * 109.52676 * 300.81918 * 15 14 13 17 17 C 1.46898 * 111.00565 * 185.84030 * 16 15 14 18 18 C 1.53001 * 117.49837 * 124.40974 * 17 16 15 19 19 C 1.53003 * 60.00276 * 252.51551 * 18 17 16 20 20 C 1.46850 * 111.19654 * 61.74248 * 16 15 14 21 21 C 1.53033 * 109.52490 * 298.25970 * 20 16 15 22 22 C 1.50706 * 109.46850 * 175.00208 * 10 9 7 23 23 C 1.38233 * 120.00144 * 79.72719 * 22 10 9 24 24 C 1.38238 * 119.99965 * 179.78918 * 23 22 10 25 25 C 1.38236 * 119.99759 * 0.43570 * 24 23 22 26 26 C 1.38231 * 119.99959 * 359.81658 * 25 24 23 27 27 C 1.38235 * 119.99447 * 259.99637 * 22 10 9 28 28 H 0.96995 * 120.00241 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47067 * 60.00384 * 9 7 2 30 30 H 1.08996 * 109.47478 * 300.00075 * 9 7 2 31 31 H 1.00900 * 111.00024 * 31.04700 * 12 10 9 32 32 H 1.08993 * 109.57644 * 34.84113 * 13 12 10 33 33 H 1.08997 * 109.50129 * 297.50058 * 14 13 12 34 34 H 1.09006 * 109.50177 * 57.61816 * 14 13 12 35 35 H 1.08995 * 109.46502 * 60.83953 * 15 14 13 36 36 H 1.09005 * 109.46032 * 180.80589 * 15 14 13 37 37 H 1.08996 * 115.55039 * 270.12528 * 17 16 15 38 38 H 1.08997 * 117.50322 * 0.02562 * 18 17 16 39 39 H 1.09008 * 117.49654 * 145.02577 * 18 17 16 40 40 H 1.08996 * 117.49968 * 252.51332 * 19 18 17 41 41 H 1.09000 * 117.49626 * 107.48854 * 19 18 17 42 42 H 1.09005 * 109.46186 * 178.24176 * 20 16 15 43 43 H 1.09004 * 109.45360 * 58.27331 * 20 16 15 44 44 H 1.09004 * 109.50318 * 299.23790 * 21 20 16 45 45 H 1.08999 * 109.53400 * 179.13825 * 21 20 16 46 46 H 1.08000 * 120.00171 * 359.97438 * 23 22 10 47 47 H 1.07997 * 120.00141 * 180.27349 * 24 23 22 48 48 H 1.07997 * 119.99869 * 179.83375 * 25 24 23 49 49 H 1.08001 * 120.00096 * 180.02562 * 26 25 24 50 50 H 1.07997 * 120.00791 * 359.97438 * 27 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 1 3.5873 -3.1754 -0.8411 12 7 3.6325 -3.2935 1.2559 13 6 3.5538 -4.7504 1.0850 14 6 3.7697 -5.4366 2.4367 15 6 3.6262 -6.9503 2.2635 16 7 2.2877 -7.2603 1.7453 17 6 2.0648 -8.7115 1.6969 18 6 0.8437 -9.2637 2.4350 19 6 2.2475 -9.4980 2.9966 20 6 2.0747 -6.6510 0.4262 21 6 2.1719 -5.1283 0.5446 22 6 5.5236 -2.6382 -0.1222 23 6 6.3085 -2.3916 0.9886 24 6 7.6863 -2.3975 0.8765 25 6 8.2790 -2.6411 -0.3484 26 6 7.4940 -2.8824 -1.4603 27 6 6.1162 -2.8808 -1.3473 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6800 0.8911 30 1 3.8753 -0.6803 -0.8888 31 1 2.7608 -2.9225 1.6032 32 1 4.3212 -5.0778 0.3836 33 1 4.7687 -5.2057 2.8066 34 1 3.0258 -5.0797 3.1490 35 1 4.3793 -7.3086 1.5617 36 1 3.7652 -7.4409 3.2269 37 1 2.3554 -9.2010 0.7673 38 1 0.2054 -8.5502 2.9562 39 1 0.3304 -10.1167 1.9909 40 1 2.6578 -10.5050 2.9220 41 1 2.5330 -8.9385 3.8874 42 1 1.0868 -6.9241 0.0552 43 1 2.8352 -7.0107 -0.2669 44 1 1.4028 -4.7665 1.2271 45 1 2.0290 -4.6766 -0.4371 46 1 5.8454 -2.1974 1.9447 47 1 8.2996 -2.2093 1.7452 48 1 9.3554 -2.6430 -0.4366 49 1 7.9570 -3.0731 -2.4172 50 1 5.5030 -3.0696 -2.2160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297289601.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:53 Heat of formation + Delta-G solvation = 31.514265 kcal Electronic energy + Delta-G solvation = -26676.236432 eV Core-core repulsion = 23281.546508 eV Total energy + Delta-G solvation = -3394.689924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.73659 -39.96562 -38.09563 -36.41811 -34.66919 -33.12355 -31.84027 -31.65201 -30.97903 -29.77193 -26.34186 -24.44114 -23.97262 -23.40227 -23.14655 -22.88840 -21.66151 -21.08990 -20.60981 -19.01091 -17.75416 -17.45049 -16.60275 -16.48919 -16.12796 -15.99569 -15.76843 -15.61533 -15.14526 -14.77327 -14.70378 -14.55613 -14.23676 -14.08733 -13.92819 -13.77135 -13.51078 -13.25008 -13.16939 -13.04016 -12.56160 -12.37196 -12.32123 -12.20478 -12.09960 -11.86227 -11.81085 -11.60543 -11.53119 -11.37180 -11.26106 -11.20650 -11.00652 -10.76645 -9.68895 -9.45314 -9.27535 -9.17543 -8.28609 -6.31339 0.58390 0.65121 1.33485 1.36292 1.47619 2.35232 2.77026 2.90516 3.00055 3.06039 3.36464 3.80582 3.93097 4.00862 4.03740 4.08337 4.13533 4.22755 4.27318 4.28580 4.29956 4.41114 4.42499 4.51815 4.55908 4.63591 4.68001 4.74407 4.79013 4.81457 4.84284 4.87175 4.89461 5.00614 5.09139 5.10292 5.16057 5.24800 5.28102 5.32012 5.33519 5.33995 5.44257 5.60016 5.70552 5.75039 5.89375 6.10190 6.21269 6.23862 6.25975 6.39933 6.59223 6.74494 7.33066 8.86961 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.009807 B = 0.004427 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.330289 B = 6323.570561 C = 8538.905332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.016 3.984 3 Si 0.939 3.061 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.252 1.252 7 C -0.519 4.519 8 H 0.042 0.958 9 C -0.001 4.001 10 C 0.148 3.852 11 H 0.028 0.972 12 N -0.671 5.671 13 C 0.099 3.901 14 C -0.094 4.094 15 C 0.066 3.934 16 N -0.522 5.522 17 C -0.011 4.011 18 C -0.165 4.165 19 C -0.161 4.161 20 C 0.076 3.924 21 C -0.137 4.137 22 C -0.078 4.078 23 C -0.102 4.102 24 C -0.129 4.129 25 C -0.130 4.130 26 C -0.126 4.126 27 C -0.139 4.139 28 H 0.265 0.735 29 H 0.023 0.977 30 H 0.013 0.987 31 H 0.346 0.654 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.033 0.967 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.052 0.948 45 H 0.047 0.953 46 H 0.119 0.881 47 H 0.140 0.860 48 H 0.146 0.854 49 H 0.141 0.859 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.371 -16.068 3.007 21.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.182 4.182 3 Si 0.764 3.236 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.176 1.176 7 C -0.557 4.557 8 H 0.060 0.940 9 C -0.039 4.039 10 C 0.038 3.962 11 H 0.046 0.954 12 N -0.301 5.301 13 C -0.012 4.012 14 C -0.132 4.132 15 C -0.062 4.062 16 N -0.247 5.247 17 C -0.120 4.120 18 C -0.203 4.203 19 C -0.199 4.199 20 C -0.053 4.053 21 C -0.176 4.176 22 C -0.079 4.079 23 C -0.121 4.121 24 C -0.147 4.147 25 C -0.148 4.148 26 C -0.143 4.143 27 C -0.158 4.158 28 H 0.074 0.926 29 H 0.041 0.959 30 H 0.031 0.969 31 H 0.166 0.834 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.090 0.910 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.137 0.863 47 H 0.157 0.843 48 H 0.164 0.836 49 H 0.159 0.841 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.524 -15.739 3.586 21.059 hybrid contribution -0.903 0.755 -1.374 1.810 sum 12.621 -14.983 2.212 19.715 Atomic orbital electron populations 1.70042 1.07995 1.27914 1.52558 1.25787 0.95354 1.02779 0.94257 0.85824 0.79576 0.79387 0.78847 1.19718 1.21054 1.17607 1.21274 0.91068 0.93225 1.50120 0.93950 1.19601 0.94367 0.93439 0.96452 1.20120 0.90416 0.94858 0.90793 0.95441 1.60639 1.38539 1.03228 1.27731 1.21532 0.94523 0.87947 0.97164 1.21471 1.02069 0.93572 0.96102 1.22048 0.88205 0.95602 1.00300 1.61679 1.28867 1.09077 1.25057 1.22483 1.05515 0.87183 0.96785 1.23094 0.91242 1.02562 1.03402 1.23113 0.99704 1.01078 0.95962 1.21850 1.00787 0.93328 0.89323 1.22190 0.98969 0.95968 1.00513 1.20060 0.94969 0.98767 0.94115 1.21076 0.93794 0.98720 0.98477 1.21439 0.94314 1.00225 0.98739 1.21418 1.00836 1.00058 0.92484 1.21325 0.92873 1.00318 0.99829 1.21204 0.95968 1.01763 0.96830 0.92620 0.95910 0.96906 0.83404 0.91992 0.90492 0.92326 0.94879 0.89270 0.89005 0.89525 0.87388 0.86869 0.88583 0.90953 0.94616 0.92902 0.93470 0.86324 0.84267 0.83621 0.84122 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.43 13.96 21.45 0.30 -58.13 16 2 C 0.02 0.91 5.47 84.66 0.46 1.38 16 3 Si 0.94 44.82 27.47 68.60 1.88 46.71 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 7 C -0.52 -28.91 8.67 25.60 0.22 -28.68 16 8 H 0.04 2.56 7.73 -2.91 -0.02 2.54 16 9 C 0.00 -0.04 3.62 29.85 0.11 0.06 16 10 C 0.15 5.91 2.01 44.17 0.09 6.00 16 11 H 0.03 1.17 7.02 -2.39 -0.02 1.16 16 12 N -0.67 -24.94 5.31 -472.88 -2.51 -27.46 16 13 C 0.10 3.14 2.34 45.00 0.11 3.25 16 14 C -0.09 -2.55 5.70 30.65 0.17 -2.37 16 15 C 0.07 1.54 5.34 86.33 0.46 2.00 16 16 N -0.52 -13.08 4.80 -871.11 -4.18 -17.26 16 17 C -0.01 -0.23 5.30 44.92 0.24 0.01 16 18 C -0.17 -3.00 10.46 30.60 0.32 -2.68 16 19 C -0.16 -2.59 9.70 30.60 0.30 -2.30 16 20 C 0.08 2.08 5.43 86.32 0.47 2.55 16 21 C -0.14 -4.58 5.34 30.65 0.16 -4.41 16 22 C -0.08 -2.72 4.61 -19.86 -0.09 -2.81 16 23 C -0.10 -3.26 9.32 22.27 0.21 -3.05 16 24 C -0.13 -3.32 10.05 22.27 0.22 -3.09 16 25 C -0.13 -3.00 10.05 22.27 0.22 -2.78 16 26 C -0.13 -3.15 10.05 22.27 0.22 -2.93 16 27 C -0.14 -4.32 9.67 22.27 0.22 -4.10 16 28 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 29 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 30 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 31 H 0.35 14.78 6.92 -89.69 -0.62 14.16 16 32 H 0.06 2.02 7.64 -2.39 -0.02 2.00 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.03 0.75 8.14 -2.39 -0.02 0.74 16 36 H 0.09 1.80 6.68 -2.38 -0.02 1.78 16 37 H 0.09 1.76 8.08 -2.39 -0.02 1.74 16 38 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.10 1.61 7.23 -2.39 -0.02 1.60 16 42 H 0.07 1.97 8.12 -2.38 -0.02 1.95 16 43 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.05 1.99 8.10 -2.39 -0.02 1.97 16 45 H 0.05 1.76 7.49 -2.39 -0.02 1.74 16 46 H 0.12 3.94 7.73 -2.91 -0.02 3.92 16 47 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 48 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 49 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 50 H 0.11 3.46 8.04 -2.91 -0.02 3.43 16 Total: -1.00 -63.11 390.44 -0.18 -63.29 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: 0.22 Total: 36.81 kcal Atomic # 6 Polarization: -48.08 SS G_CDS: 4.11 Total: -43.96 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -6.40 Total: -102.84 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.71 kcal Total: -63.11 -0.18 -63.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297289601.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.805 kcal (2) G-P(sol) polarization free energy of solvation -63.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds