Wall clock time and date at job start Tue Mar 31 2020 11:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38236 * 119.99870 * 2 1 4 4 C 1.50699 * 119.99997 * 359.97438 * 3 2 1 5 5 C 1.38240 * 119.99691 * 180.25124 * 3 2 1 6 6 C 1.50700 * 119.99650 * 179.72747 * 5 3 2 7 7 C 1.38227 * 120.00164 * 359.53949 * 5 3 2 8 8 C 1.50706 * 120.00223 * 180.20750 * 7 5 3 9 9 N 1.46899 * 109.46875 * 82.05826 * 8 7 5 10 10 C 1.46894 * 111.00221 * 197.78204 * 9 8 7 11 11 C 1.50700 * 109.47535 * 159.69328 * 10 9 8 12 12 H 1.07998 * 119.99976 * 354.28766 * 11 10 9 13 13 C 1.37881 * 119.99997 * 174.27904 * 11 10 9 14 14 N 1.31511 * 119.99844 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99645 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47116 * 90.00650 * 15 13 11 17 17 H 1.48504 * 109.47130 * 210.00095 * 15 13 11 18 18 H 1.48496 * 109.47666 * 330.00274 * 15 13 11 19 19 C 1.46906 * 111.00128 * 73.82991 * 9 8 7 20 20 C 1.53001 * 109.46856 * 189.98136 * 19 9 8 21 21 C 1.47204 * 109.46618 * 174.16849 * 20 19 9 22 22 N 7.23319 * 126.47352 * 118.67427 * 2 1 3 23 23 C 1.38235 * 120.00158 * 0.41619 * 7 5 3 24 24 C 1.50700 * 120.00473 * 179.78811 * 23 7 5 25 25 C 1.38234 * 120.00327 * 179.97438 * 2 1 3 26 26 C 1.50705 * 119.99500 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.47132 * 89.99865 * 1 2 3 28 28 H 1.08998 * 109.47341 * 210.00131 * 1 2 3 29 29 H 1.09009 * 109.47184 * 329.99872 * 1 2 3 30 30 H 1.08991 * 109.47443 * 89.99880 * 4 3 2 31 31 H 1.09003 * 109.46551 * 209.99980 * 4 3 2 32 32 H 1.09001 * 109.47180 * 329.98955 * 4 3 2 33 33 H 1.09008 * 109.46839 * 94.02190 * 6 5 3 34 34 H 1.08994 * 109.47238 * 214.01721 * 6 5 3 35 35 H 1.09002 * 109.47726 * 334.02769 * 6 5 3 36 36 H 1.08997 * 109.47251 * 202.05783 * 8 7 5 37 37 H 1.08993 * 109.46985 * 322.05972 * 8 7 5 38 38 H 1.08999 * 109.47304 * 279.69811 * 10 9 8 39 39 H 1.09007 * 109.46792 * 39.69513 * 10 9 8 40 40 H 0.97007 * 119.99737 * 180.02562 * 14 13 11 41 41 H 1.09008 * 109.46410 * 309.97519 * 19 9 8 42 42 H 1.08995 * 109.46900 * 69.97416 * 19 9 8 43 43 H 1.09000 * 109.47127 * 294.16412 * 20 19 9 44 44 H 1.08991 * 109.47368 * 54.17577 * 20 19 9 45 45 H 1.09001 * 109.47065 * 268.18731 * 24 23 7 46 46 H 1.08999 * 109.46918 * 28.18454 * 24 23 7 47 47 H 1.08997 * 109.47458 * 148.18687 * 24 23 7 48 48 H 1.09007 * 109.46470 * 90.00826 * 26 25 2 49 49 H 1.08992 * 109.47056 * 210.00099 * 26 25 2 50 50 H 1.08997 * 109.47435 * 330.00771 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 1.4446 2.5022 -0.0006 5 6 3.5805 1.1971 -0.0052 6 6 4.3340 2.5023 -0.0115 7 6 4.2717 0.0001 -0.0009 8 6 5.7787 0.0000 -0.0019 9 7 6.2692 0.1969 1.3687 10 6 7.6759 0.6201 1.3688 11 6 8.0018 1.2807 2.6835 12 1 7.2196 1.4597 3.4064 13 6 9.2986 1.6563 2.9636 14 7 10.2509 1.4386 2.0831 15 14 9.7025 2.4744 4.5936 16 1 10.0502 1.4355 5.5961 17 1 10.8547 3.3940 4.4138 18 1 8.5241 3.2442 5.0667 19 6 6.0851 -1.0182 2.1735 20 6 6.3714 -0.7047 3.6434 21 6 6.0526 -1.8822 4.4673 22 7 5.8068 -2.7909 5.1031 23 6 3.5806 -1.1971 0.0000 24 6 4.3340 -2.5022 0.0000 25 6 2.1982 -1.1971 0.0005 26 6 1.4446 -2.5022 0.0017 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.2625 2.8171 1.0268 31 1 2.0340 3.2617 -0.5144 32 1 0.4925 2.3718 -0.5149 33 1 4.5819 2.7835 1.0121 34 1 5.2511 2.3896 -0.5895 35 1 3.7139 3.2778 -0.4611 36 1 6.1418 -0.9539 -0.3842 37 1 6.1416 0.8079 -0.6372 38 1 8.3173 -0.2503 1.2307 39 1 7.8427 1.3270 0.5559 40 1 11.1633 1.7025 2.2804 41 1 5.0586 -1.3702 2.0702 42 1 6.7709 -1.7911 1.8265 43 1 7.4250 -0.4523 3.7626 44 1 5.7576 0.1380 3.9613 45 1 4.4868 -2.8335 -1.0272 46 1 5.3005 -2.3638 0.4846 47 1 3.7598 -3.2533 0.5424 48 1 1.2628 -2.8176 -1.0258 49 1 2.0339 -3.2615 0.5158 50 1 0.4924 -2.3715 0.5157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340724135.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:28 Heat of formation + Delta-G solvation = 38.527134 kcal Electronic energy + Delta-G solvation = -27157.730047 eV Core-core repulsion = 23763.344224 eV Total energy + Delta-G solvation = -3394.385823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.22586 -37.52694 -35.93365 -34.81650 -34.11685 -32.49491 -30.79149 -29.57286 -29.09192 -28.21847 -27.16479 -25.86107 -24.01942 -23.64950 -22.93955 -20.54630 -19.27018 -18.99866 -17.36212 -16.72496 -15.93381 -15.20015 -14.89431 -14.64586 -14.61673 -14.12175 -13.95221 -13.73184 -13.65493 -13.30702 -13.11589 -12.92457 -12.90177 -12.69417 -12.45397 -12.34947 -12.34171 -12.20383 -12.13711 -11.91096 -11.84627 -11.49944 -11.44080 -11.14230 -11.00031 -10.91395 -10.75827 -10.71083 -10.49359 -10.44181 -10.33562 -10.28896 -9.62457 -9.28097 -8.49757 -8.03852 -7.97216 -7.37686 -6.11926 -4.12256 1.59158 1.64380 3.23738 3.26206 3.31315 3.35100 3.37357 3.84538 4.34367 4.52505 4.85698 4.89723 5.04666 5.10484 5.16246 5.21808 5.24456 5.27784 5.46284 5.47332 5.57542 5.60542 5.64198 5.67155 5.71005 5.75368 5.77104 5.78715 5.84255 5.85347 5.91388 5.97781 6.03377 6.10442 6.13430 6.19236 6.30261 6.38630 6.50708 6.54493 6.69424 6.80597 6.83940 6.85406 7.04117 7.15407 7.25133 7.35809 7.72232 7.98231 8.03783 8.09952 8.41382 8.94133 9.50239 10.97593 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.013430 B = 0.004295 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.362783 B = 6517.486676 C = 7437.427566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.095 4.095 4 C -0.114 4.114 5 C -0.056 4.056 6 C -0.113 4.113 7 C -0.065 4.065 8 C 0.090 3.910 9 N -0.525 5.525 10 C 0.188 3.812 11 C -0.511 4.511 12 H 0.073 0.927 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.889 3.111 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.271 1.271 19 C 0.074 3.926 20 C -0.038 4.038 21 C 0.221 3.779 22 N -0.476 5.476 23 C -0.080 4.080 24 C -0.127 4.127 25 C -0.096 4.096 26 C -0.115 4.115 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.036 0.964 37 H 0.082 0.918 38 H 0.001 0.999 39 H 0.027 0.973 40 H 0.262 0.738 41 H 0.066 0.934 42 H 0.030 0.970 43 H 0.147 0.853 44 H 0.110 0.890 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.066 0.934 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.959 -1.560 -7.234 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.095 4.095 4 C -0.170 4.170 5 C -0.057 4.057 6 C -0.169 4.169 7 C -0.065 4.065 8 C -0.038 4.038 9 N -0.249 5.249 10 C 0.063 3.937 11 C -0.549 4.549 12 H 0.091 0.909 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.716 3.284 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.195 1.195 19 C -0.055 4.055 20 C -0.078 4.078 21 C -0.096 4.096 22 N -0.155 5.155 23 C -0.080 4.080 24 C -0.183 4.183 25 C -0.096 4.096 26 C -0.171 4.171 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.019 0.981 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.164 0.836 44 H 0.128 0.872 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.382 -2.505 -6.104 17.660 hybrid contribution 1.006 0.172 0.247 1.050 sum -15.376 -2.333 -5.857 16.618 Atomic orbital electron populations 1.20821 0.92036 1.02420 1.01710 1.19405 0.95217 0.92147 1.02194 1.19481 0.93115 0.94436 1.02509 1.20831 0.99466 0.94722 1.02026 1.19526 0.92381 0.95240 0.98513 1.20847 0.99309 0.93257 1.03470 1.19563 0.95565 0.91674 0.99727 1.21047 0.90127 1.00517 0.92083 1.62038 1.24130 1.30099 1.08646 1.19877 0.80497 0.95227 0.98098 1.21283 0.93297 1.38373 1.01960 0.90916 1.24981 0.96465 0.95958 0.96942 1.69947 1.01190 1.47304 1.34741 0.86637 0.78245 0.79592 0.83893 1.20629 1.21301 1.19543 1.21882 0.99844 0.91900 0.91923 1.20077 1.07759 0.88425 0.91556 1.29981 0.91697 0.94503 0.93385 1.81094 1.11145 1.12065 1.11162 1.19500 0.92757 0.94764 1.01016 1.21083 1.00736 0.94475 1.02030 1.19391 0.92934 0.94461 1.02854 1.20851 0.99784 0.94734 1.01751 0.91750 0.91629 0.91739 0.91511 0.91246 0.92080 0.89975 0.91373 0.92474 0.94594 0.90030 0.98146 0.95470 0.92819 0.91525 0.95216 0.83592 0.87206 0.91630 0.90623 0.91634 0.91741 0.91567 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 8.79 36.00 0.32 -0.78 16 2 C -0.09 -1.14 5.88 -104.63 -0.62 -1.75 16 3 C -0.10 -1.27 5.88 -104.62 -0.62 -1.88 16 4 C -0.11 -1.20 8.79 36.01 0.32 -0.89 16 5 C -0.06 -0.82 5.88 -104.62 -0.62 -1.44 16 6 C -0.11 -1.57 9.19 36.01 0.33 -1.23 16 7 C -0.06 -0.98 4.92 -104.62 -0.51 -1.50 16 8 C 0.09 1.46 4.33 -4.97 -0.02 1.44 16 9 N -0.52 -9.59 4.45 -237.51 -1.06 -10.64 16 10 C 0.19 4.18 4.72 -4.98 -0.02 4.16 16 11 C -0.51 -12.19 6.51 -34.44 -0.22 -12.41 16 12 H 0.07 1.67 6.06 -52.49 -0.32 1.35 16 13 C 0.06 1.49 5.46 -17.82 -0.10 1.40 16 14 N -0.89 -24.29 13.29 55.43 0.74 -23.55 16 15 Si 0.89 19.84 29.54 -169.99 -5.02 14.82 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 C 0.07 1.26 3.46 -3.82 -0.01 1.25 16 20 C -0.04 -0.66 4.31 -29.52 -0.13 -0.78 16 21 C 0.22 3.90 15.43 -20.76 -0.32 3.58 16 22 N -0.48 -9.17 18.54 42.15 0.78 -8.39 16 23 C -0.08 -1.13 5.18 -104.62 -0.54 -1.67 16 24 C -0.13 -1.61 8.12 36.01 0.29 -1.31 16 25 C -0.10 -1.26 5.88 -104.62 -0.62 -1.88 16 26 C -0.11 -1.19 9.20 36.01 0.33 -0.86 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.58 5.95 -51.93 -0.31 0.27 16 29 H 0.06 0.57 6.70 -51.92 -0.35 0.23 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.69 5.89 -51.93 -0.31 0.38 16 32 H 0.06 0.55 6.70 -51.93 -0.35 0.20 16 33 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 34 H 0.07 0.98 6.25 -51.93 -0.32 0.66 16 35 H 0.06 0.67 5.79 -51.93 -0.30 0.37 16 36 H 0.04 0.57 6.13 -51.93 -0.32 0.25 16 37 H 0.08 1.34 5.84 -51.93 -0.30 1.04 16 38 H 0.00 0.02 7.86 -51.93 -0.41 -0.39 16 39 H 0.03 0.65 7.61 -51.93 -0.40 0.26 16 40 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.07 1.08 5.37 -51.92 -0.28 0.80 16 42 H 0.03 0.52 7.55 -51.93 -0.39 0.12 16 43 H 0.15 2.83 5.60 -51.93 -0.29 2.53 16 44 H 0.11 1.82 7.61 -51.93 -0.40 1.42 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.08 1.03 3.88 -51.93 -0.20 0.83 16 47 H 0.06 0.76 6.02 -51.93 -0.31 0.44 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.07 0.67 5.98 -51.93 -0.31 0.36 16 50 H 0.06 0.60 5.95 -51.93 -0.31 0.29 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -27.43 376.80 -9.06 -36.48 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.42 Total: 2.18 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -2.76 Total: -16.58 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.46 Total: -42.58 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.43 -9.06 -36.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340724135.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.010 kcal (2) G-P(sol) polarization free energy of solvation -27.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds