Wall clock time and date at job start Tue Mar 31 2020 10:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86801 * 119.99657 * 2 1 4 4 H 1.48497 * 109.47024 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46985 * 300.00085 * 3 2 1 6 6 H 1.48501 * 109.47203 * 59.99765 * 3 2 1 7 7 C 1.39941 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99797 * 197.86949 * 7 2 1 9 9 C 1.41396 * 120.00288 * 17.86966 * 7 2 1 10 10 C 1.40716 * 120.24227 * 24.37920 * 9 7 2 11 11 C 1.37615 * 119.74369 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24864 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.75218 * 180.02562 * 12 11 10 14 14 N 1.46901 * 109.47159 * 89.99875 * 13 12 11 15 15 C 1.46841 * 111.00158 * 170.00564 * 14 13 12 16 16 C 1.53040 * 109.52363 * 185.84165 * 15 14 13 17 17 C 1.53120 * 109.27447 * 300.81664 * 16 15 14 18 18 N 1.46909 * 109.51800 * 177.55784 * 17 16 15 19 19 C 1.48536 * 110.99941 * 57.60624 * 18 17 16 20 20 C 1.54941 * 103.22439 * 159.71597 * 19 18 17 21 21 C 1.54591 * 102.92223 * 322.58654 * 20 19 18 22 22 C 1.47906 * 110.99543 * 174.99922 * 18 17 16 23 23 C 1.53115 * 109.16225 * 57.65769 * 17 16 15 24 24 C 1.46851 * 110.99775 * 294.21569 * 14 13 12 25 25 C 1.38637 * 120.50265 * 0.29625 * 12 11 10 26 26 C 1.37617 * 120.24585 * 359.44770 * 25 12 11 27 27 H 0.96996 * 120.00457 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.12807 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.87746 * 180.02562 * 11 10 9 30 30 H 1.08999 * 109.47117 * 330.00329 * 13 12 11 31 31 H 1.08996 * 109.47400 * 209.99933 * 13 12 11 32 32 H 1.08995 * 109.46729 * 65.82126 * 15 14 13 33 33 H 1.09000 * 109.46255 * 305.85088 * 15 14 13 34 34 H 1.08997 * 109.50414 * 60.75630 * 16 15 14 35 35 H 1.09001 * 109.50251 * 180.83684 * 16 15 14 36 36 H 1.08996 * 109.52465 * 297.74524 * 17 16 15 37 37 H 1.08996 * 110.66380 * 278.15111 * 19 18 17 38 38 H 1.08997 * 110.66216 * 41.28251 * 19 18 17 39 39 H 1.08999 * 110.71905 * 204.23021 * 20 19 18 40 40 H 1.08999 * 110.72029 * 80.94378 * 20 19 18 41 41 H 1.08998 * 110.31100 * 263.03779 * 21 20 19 42 42 H 1.08998 * 110.30734 * 140.87503 * 21 20 19 43 43 H 1.08993 * 109.91912 * 333.51227 * 22 18 17 44 44 H 1.09000 * 109.91460 * 94.60982 * 22 18 17 45 45 H 1.09009 * 109.50520 * 62.28318 * 23 17 16 46 46 H 1.09001 * 109.50813 * 182.40337 * 23 17 16 47 47 H 1.08996 * 109.46622 * 54.14191 * 24 14 13 48 48 H 1.09002 * 109.45983 * 294.17196 * 24 14 13 49 49 H 1.08002 * 119.87776 * 179.70824 * 25 12 11 50 50 H 1.08006 * 120.12979 * 180.27855 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2876 9 6 1.3523 -2.4071 -0.3747 10 6 0.2211 -2.3626 -1.2105 11 6 -0.4095 -3.5321 -1.5688 12 6 0.0660 -4.7508 -1.1100 13 6 -0.6328 -6.0247 -1.5099 14 7 -0.0415 -6.5383 -2.7527 15 6 -0.5288 -7.8918 -3.0473 16 6 0.2145 -8.4496 -4.2632 17 6 -0.0199 -7.5299 -5.4647 18 7 0.7386 -8.0284 -6.6198 19 6 0.3525 -9.4248 -6.9477 20 6 0.8119 -9.5834 -8.4189 21 6 0.4992 -8.1983 -9.0300 22 6 0.4427 -7.2332 -7.8313 23 6 0.4516 -6.1158 -5.1147 24 6 -0.2985 -5.6256 -3.8741 25 6 1.1763 -4.8062 -0.2816 26 6 1.8258 -3.6498 0.0853 27 1 -0.4850 0.8400 0.0004 28 1 -0.1507 -1.4142 -1.5694 29 1 -1.2775 -3.5004 -2.2106 30 1 -1.6924 -5.8237 -1.6677 31 1 -0.5175 -6.7660 -0.7193 32 1 -1.5971 -7.8549 -3.2602 33 1 -0.3523 -8.5367 -2.1865 34 1 1.2814 -8.4998 -4.0459 35 1 -0.1579 -9.4485 -4.4906 36 1 -1.0825 -7.5102 -5.7065 37 1 0.8764 -10.1302 -6.3028 38 1 -0.7266 -9.5548 -6.8654 39 1 0.2392 -10.3641 -8.9196 40 1 1.8800 -9.7948 -8.4687 41 1 -0.4617 -8.2197 -9.5440 42 1 1.2906 -7.9010 -9.7180 43 1 -0.5523 -6.7950 -7.7540 44 1 1.1870 -6.4457 -7.9495 45 1 1.5224 -6.1292 -4.9109 46 1 0.2482 -5.4469 -5.9509 47 1 0.0452 -4.6245 -3.6138 48 1 -1.3680 -5.5993 -4.0832 49 1 1.5353 -5.7608 0.0738 50 1 2.6932 -3.6955 0.7272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342692245.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:33 Heat of formation + Delta-G solvation = 16.638550 kcal Electronic energy + Delta-G solvation = -26138.570261 eV Core-core repulsion = 22743.235278 eV Total energy + Delta-G solvation = -3395.334983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.82539 -38.25666 -37.06192 -34.24499 -33.21840 -31.01559 -30.62501 -29.33907 -29.01887 -28.87687 -26.37432 -24.05700 -23.07883 -22.47390 -21.15303 -20.72161 -20.64613 -19.72094 -19.53208 -17.26040 -16.50531 -16.11075 -15.37635 -15.21160 -14.83685 -14.56789 -14.21213 -13.92778 -13.88655 -13.64551 -13.46771 -13.18477 -12.93645 -12.52879 -12.25436 -12.15159 -12.05288 -11.85687 -11.66975 -11.54453 -11.38344 -11.29830 -11.09013 -11.04235 -10.92303 -10.81897 -10.77540 -10.50073 -10.42482 -10.23952 -10.09841 -9.50516 -9.34438 -9.09509 -8.52916 -7.89567 -7.38366 -7.24754 -6.73762 -4.31250 2.75517 3.08383 3.12151 3.14253 3.19702 3.79711 3.95194 4.30669 4.44179 4.45320 4.70375 4.73040 4.89660 4.96906 5.06095 5.22383 5.27345 5.39022 5.43494 5.49485 5.55136 5.58871 5.63588 5.69036 5.72789 5.74937 5.77746 5.84310 5.87455 5.93709 5.98882 6.01145 6.12690 6.27154 6.29905 6.40181 6.40891 6.46019 6.53203 6.78160 6.98341 7.01537 7.10815 7.30327 7.41860 7.52431 7.54046 7.66203 7.93413 8.09643 8.18584 8.34452 8.67903 8.93525 9.01902 10.20825 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.002636 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.302153 B =10620.271964 C =11426.110555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.112 3.888 10 C -0.166 4.166 11 C -0.095 4.095 12 C -0.206 4.206 13 C 0.120 3.880 14 N -0.529 5.529 15 C 0.056 3.944 16 C -0.106 4.106 17 C 0.079 3.921 18 N -0.512 5.512 19 C 0.034 3.966 20 C -0.124 4.124 21 C -0.132 4.132 22 C 0.036 3.964 23 C -0.105 4.105 24 C 0.057 3.943 25 C -0.069 4.069 26 C -0.228 4.228 27 H 0.279 0.721 28 H 0.116 0.884 29 H 0.082 0.918 30 H 0.022 0.978 31 H 0.064 0.936 32 H 0.023 0.977 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.034 0.966 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.042 0.958 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.059 0.941 47 H 0.093 0.907 48 H 0.020 0.980 49 H 0.087 0.913 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.438 -14.391 -13.462 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.109 3.891 10 C -0.185 4.185 11 C -0.114 4.114 12 C -0.207 4.207 13 C -0.006 4.006 14 N -0.254 5.254 15 C -0.073 4.073 16 C -0.144 4.144 17 C -0.030 4.030 18 N -0.236 5.236 19 C -0.093 4.093 20 C -0.162 4.162 21 C -0.170 4.170 22 C -0.092 4.092 23 C -0.143 4.143 24 C -0.071 4.071 25 C -0.088 4.088 26 C -0.247 4.247 27 H 0.090 0.910 28 H 0.134 0.866 29 H 0.100 0.900 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.078 0.922 47 H 0.111 0.889 48 H 0.038 0.962 49 H 0.105 0.895 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.598 -14.221 -13.234 19.492 hybrid contribution -1.549 0.861 -0.262 1.791 sum -3.146 -13.360 -13.496 19.250 Atomic orbital electron populations 1.69840 1.07573 1.28991 1.35602 1.25904 0.94696 1.01274 0.92276 0.86307 0.81088 0.81100 0.78499 1.18390 1.19751 1.20054 1.19624 0.98146 0.91301 1.40140 0.90480 1.17620 0.91053 0.92019 0.88381 1.21269 0.99395 0.96608 1.01237 1.20501 0.98399 0.92898 0.99599 1.18825 1.01623 0.92225 1.08055 1.20717 0.94387 0.95320 0.90161 1.62039 1.59182 1.00985 1.03167 1.22042 0.95957 0.91561 0.97694 1.21626 1.02409 0.97087 0.93304 1.21901 0.94370 0.96026 0.90659 1.64822 1.53620 1.01761 1.03362 1.23215 0.98405 0.91476 0.96247 1.22480 1.01907 0.96753 0.95054 1.22402 1.01699 0.95226 0.97648 1.22847 1.00106 0.96830 0.89460 1.21606 1.02135 0.93835 0.96712 1.22104 0.96680 0.98307 0.90020 1.20315 0.94909 0.96231 0.97307 1.20966 1.03701 0.92979 1.07093 0.91031 0.86614 0.90028 0.96004 0.91759 0.95890 0.90888 0.90119 0.92242 0.94760 0.89981 0.94087 0.91326 0.90718 0.91774 0.91049 0.93956 0.90228 0.90102 0.92192 0.88863 0.96159 0.89525 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.66 10.95 55.55 0.61 -20.05 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.81 29.60 -169.99 -5.03 13.77 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 6 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.46 -12.39 9.05 -37.74 -0.34 -12.73 16 8 H 0.08 2.00 7.91 -52.48 -0.41 1.59 16 9 C 0.11 3.00 5.58 -106.82 -0.60 2.41 16 10 C -0.17 -4.30 8.70 -38.87 -0.34 -4.64 16 11 C -0.10 -2.19 7.83 -39.66 -0.31 -2.50 16 12 C -0.21 -4.44 4.91 -104.33 -0.51 -4.95 16 13 C 0.12 2.15 5.11 -4.97 -0.03 2.12 16 14 N -0.53 -8.62 4.65 -236.11 -1.10 -9.72 16 15 C 0.06 0.75 5.46 -3.84 -0.02 0.73 16 16 C -0.11 -1.27 5.10 -26.65 -0.14 -1.41 16 17 C 0.08 0.96 1.72 -67.59 -0.12 0.85 16 18 N -0.51 -5.75 5.11 -222.35 -1.14 -6.88 16 19 C 0.03 0.32 5.33 -1.89 -0.01 0.31 16 20 C -0.12 -0.97 7.06 -24.87 -0.18 -1.14 16 21 C -0.13 -1.06 6.93 -25.38 -0.18 -1.23 16 22 C 0.04 0.36 5.61 -2.75 -0.02 0.34 16 23 C -0.10 -1.45 5.32 -26.65 -0.14 -1.60 16 24 C 0.06 0.91 5.15 -3.83 -0.02 0.89 16 25 C -0.07 -1.56 9.67 -39.66 -0.38 -1.94 16 26 C -0.23 -5.67 9.80 -38.87 -0.38 -6.05 16 27 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 28 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 29 H 0.08 1.73 7.94 -52.49 -0.42 1.31 16 30 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 31 H 0.06 1.08 7.92 -51.93 -0.41 0.67 16 32 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.91 8.02 -51.93 -0.42 0.50 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.61 7.03 -51.93 -0.37 0.25 16 36 H 0.03 0.43 7.96 -51.93 -0.41 0.02 16 37 H 0.08 0.74 7.71 -51.93 -0.40 0.34 16 38 H 0.04 0.38 8.02 -51.93 -0.42 -0.04 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.04 0.43 7.65 -51.93 -0.40 0.03 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.08 1.26 8.14 -51.92 -0.42 0.83 16 46 H 0.06 0.78 7.45 -51.93 -0.39 0.39 16 47 H 0.09 1.72 5.74 -51.93 -0.30 1.43 16 48 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 50 H 0.09 2.14 8.06 -52.48 -0.42 1.71 16 LS Contribution 380.35 15.07 5.73 5.73 Total: -1.00 -27.12 380.35 -13.58 -40.70 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -8.86 Total: 5.18 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: -3.79 Total: -28.73 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -1.63 Total: -36.65 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.12 -13.58 -40.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342692245.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.337 kcal (2) G-P(sol) polarization free energy of solvation -27.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds