Wall clock time and date at job start Tue Mar 31 2020 10:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86801 * 119.99657 * 2 1 4 4 H 1.48497 * 109.47024 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46985 * 300.00085 * 3 2 1 6 6 H 1.48501 * 109.47203 * 59.99765 * 3 2 1 7 7 C 1.39941 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99797 * 197.86949 * 7 2 1 9 9 C 1.41396 * 120.00288 * 17.86966 * 7 2 1 10 10 C 1.40716 * 120.24227 * 24.37920 * 9 7 2 11 11 C 1.37615 * 119.74369 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24864 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.75218 * 180.02562 * 12 11 10 14 14 N 1.46901 * 109.47159 * 89.99875 * 13 12 11 15 15 C 1.46841 * 111.00158 * 170.00564 * 14 13 12 16 16 C 1.53040 * 109.52363 * 185.84165 * 15 14 13 17 17 C 1.53120 * 109.27447 * 300.81664 * 16 15 14 18 18 N 1.46909 * 109.51800 * 177.55784 * 17 16 15 19 19 C 1.48536 * 110.99941 * 57.60624 * 18 17 16 20 20 C 1.54941 * 103.22439 * 159.71597 * 19 18 17 21 21 C 1.54591 * 102.92223 * 322.58654 * 20 19 18 22 22 C 1.47906 * 110.99543 * 174.99922 * 18 17 16 23 23 C 1.53115 * 109.16225 * 57.65769 * 17 16 15 24 24 C 1.46851 * 110.99775 * 294.21569 * 14 13 12 25 25 C 1.38637 * 120.50265 * 0.29625 * 12 11 10 26 26 C 1.37617 * 120.24585 * 359.44770 * 25 12 11 27 27 H 0.96996 * 120.00457 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.12807 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.87746 * 180.02562 * 11 10 9 30 30 H 1.08999 * 109.47117 * 330.00329 * 13 12 11 31 31 H 1.08996 * 109.47400 * 209.99933 * 13 12 11 32 32 H 1.08995 * 109.46729 * 65.82126 * 15 14 13 33 33 H 1.09000 * 109.46255 * 305.85088 * 15 14 13 34 34 H 1.08997 * 109.50414 * 60.75630 * 16 15 14 35 35 H 1.09001 * 109.50251 * 180.83684 * 16 15 14 36 36 H 1.08996 * 109.52465 * 297.74524 * 17 16 15 37 37 H 1.08996 * 110.66380 * 278.15111 * 19 18 17 38 38 H 1.08997 * 110.66216 * 41.28251 * 19 18 17 39 39 H 1.08999 * 110.71905 * 204.23021 * 20 19 18 40 40 H 1.08999 * 110.72029 * 80.94378 * 20 19 18 41 41 H 1.08998 * 110.31100 * 263.03779 * 21 20 19 42 42 H 1.08998 * 110.30734 * 140.87503 * 21 20 19 43 43 H 1.08993 * 109.91912 * 333.51227 * 22 18 17 44 44 H 1.09000 * 109.91460 * 94.60982 * 22 18 17 45 45 H 1.09009 * 109.50520 * 62.28318 * 23 17 16 46 46 H 1.09001 * 109.50813 * 182.40337 * 23 17 16 47 47 H 1.08996 * 109.46622 * 54.14191 * 24 14 13 48 48 H 1.09002 * 109.45983 * 294.17196 * 24 14 13 49 49 H 1.08002 * 119.87776 * 179.70824 * 25 12 11 50 50 H 1.08006 * 120.12979 * 180.27855 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2876 9 6 1.3523 -2.4071 -0.3747 10 6 0.2211 -2.3626 -1.2105 11 6 -0.4095 -3.5321 -1.5688 12 6 0.0660 -4.7508 -1.1100 13 6 -0.6328 -6.0247 -1.5099 14 7 -0.0415 -6.5383 -2.7527 15 6 -0.5288 -7.8918 -3.0473 16 6 0.2145 -8.4496 -4.2632 17 6 -0.0199 -7.5299 -5.4647 18 7 0.7386 -8.0284 -6.6198 19 6 0.3525 -9.4248 -6.9477 20 6 0.8119 -9.5834 -8.4189 21 6 0.4992 -8.1983 -9.0300 22 6 0.4427 -7.2332 -7.8313 23 6 0.4516 -6.1158 -5.1147 24 6 -0.2985 -5.6256 -3.8741 25 6 1.1763 -4.8062 -0.2816 26 6 1.8258 -3.6498 0.0853 27 1 -0.4850 0.8400 0.0004 28 1 -0.1507 -1.4142 -1.5694 29 1 -1.2775 -3.5004 -2.2106 30 1 -1.6924 -5.8237 -1.6677 31 1 -0.5175 -6.7660 -0.7193 32 1 -1.5971 -7.8549 -3.2602 33 1 -0.3523 -8.5367 -2.1865 34 1 1.2814 -8.4998 -4.0459 35 1 -0.1579 -9.4485 -4.4906 36 1 -1.0825 -7.5102 -5.7065 37 1 0.8764 -10.1302 -6.3028 38 1 -0.7266 -9.5548 -6.8654 39 1 0.2392 -10.3641 -8.9196 40 1 1.8800 -9.7948 -8.4687 41 1 -0.4617 -8.2197 -9.5440 42 1 1.2906 -7.9010 -9.7180 43 1 -0.5523 -6.7950 -7.7540 44 1 1.1870 -6.4457 -7.9495 45 1 1.5224 -6.1292 -4.9109 46 1 0.2482 -5.4469 -5.9509 47 1 0.0452 -4.6245 -3.6138 48 1 -1.3680 -5.5993 -4.0832 49 1 1.5353 -5.7608 0.0738 50 1 2.6932 -3.6955 0.7272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342692245.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:32 Heat of formation + Delta-G solvation = 2.534517 kcal Electronic energy + Delta-G solvation = -26139.181858 eV Core-core repulsion = 22743.235278 eV Total energy + Delta-G solvation = -3395.946580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.82982 -39.67047 -38.48836 -35.84124 -34.59958 -32.30300 -31.91312 -31.13776 -30.36531 -29.66071 -27.98531 -25.53410 -24.18154 -23.71309 -22.79493 -21.93076 -21.43495 -21.35096 -20.61909 -19.20406 -17.46319 -17.17648 -16.87350 -16.35376 -16.23947 -16.01089 -15.63079 -15.20929 -15.07963 -14.96030 -14.74269 -14.37056 -14.12168 -13.86446 -13.80401 -13.41299 -13.30968 -13.13026 -13.02221 -12.86405 -12.69867 -12.57531 -12.35841 -12.21866 -12.14337 -12.08820 -11.96699 -11.86645 -11.49666 -11.44154 -11.30387 -11.24376 -11.09225 -10.97297 -9.37212 -9.34580 -9.21968 -9.06372 -8.62826 -6.31193 0.95516 1.18491 1.37309 1.49361 1.52857 2.21013 2.67771 2.96342 3.17277 3.65901 3.74695 3.80644 3.89588 4.00795 4.07008 4.18963 4.21977 4.33543 4.35696 4.37137 4.47070 4.52412 4.59791 4.63584 4.65600 4.68057 4.75369 4.78379 4.81706 4.91603 4.93904 4.98872 5.00610 5.06578 5.08467 5.13271 5.17878 5.20486 5.22252 5.33553 5.39054 5.41711 5.50508 5.73538 5.98456 5.99903 6.12727 6.14212 6.16219 6.29949 6.37850 6.42478 6.72921 6.96694 7.06839 8.34383 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.002636 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.302153 B =10620.271964 C =11426.110555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.035 3.965 3 Si 0.980 3.020 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.502 4.502 8 H 0.072 0.928 9 C 0.079 3.921 10 C -0.189 4.189 11 C -0.094 4.094 12 C -0.192 4.192 13 C 0.125 3.875 14 N -0.541 5.541 15 C 0.057 3.943 16 C -0.099 4.099 17 C 0.086 3.914 18 N -0.526 5.526 19 C 0.032 3.968 20 C -0.120 4.120 21 C -0.128 4.128 22 C 0.032 3.968 23 C -0.097 4.097 24 C 0.061 3.939 25 C -0.072 4.072 26 C -0.245 4.245 27 H 0.287 0.713 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.028 0.972 31 H 0.082 0.918 32 H 0.032 0.968 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.036 0.964 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.039 0.961 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.027 0.973 49 H 0.113 0.887 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.998 -16.355 -14.605 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.532 4.532 8 H 0.090 0.910 9 C 0.077 3.923 10 C -0.209 4.209 11 C -0.113 4.113 12 C -0.193 4.193 13 C -0.001 4.001 14 N -0.266 5.266 15 C -0.071 4.071 16 C -0.137 4.137 17 C -0.023 4.023 18 N -0.251 5.251 19 C -0.095 4.095 20 C -0.158 4.158 21 C -0.167 4.167 22 C -0.096 4.096 23 C -0.135 4.135 24 C -0.068 4.068 25 C -0.091 4.091 26 C -0.264 4.264 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.047 0.953 31 H 0.100 0.900 32 H 0.050 0.950 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.054 0.946 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.057 0.943 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.045 0.955 49 H 0.131 0.869 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.162 -16.212 -14.385 21.781 hybrid contribution -1.422 1.318 0.047 1.940 sum -3.584 -14.894 -14.337 20.982 Atomic orbital electron populations 1.69887 1.08958 1.30346 1.36137 1.26741 0.95494 1.04455 0.91272 0.85190 0.79415 0.76312 0.78969 1.18297 1.18874 1.18944 1.19838 0.98255 0.92674 1.42415 0.90988 1.17956 0.91981 0.93037 0.89367 1.21226 1.00271 0.96963 1.02443 1.20696 0.98572 0.92701 0.99331 1.19257 1.00626 0.93509 1.05933 1.20648 0.94169 0.93749 0.91558 1.61948 1.59654 1.02407 1.02567 1.22131 0.96515 0.89655 0.98808 1.21569 1.01432 0.98106 0.92562 1.21762 0.94364 0.94742 0.91399 1.64792 1.53772 1.03022 1.03465 1.23288 0.98748 0.90165 0.97292 1.22485 1.02091 0.97054 0.94164 1.22400 1.02562 0.94800 0.96891 1.22883 0.99582 0.97141 0.90016 1.21493 1.00512 0.95544 0.95976 1.22003 0.97122 0.96885 0.90757 1.20629 0.94855 0.96575 0.97044 1.21169 1.04310 0.93359 1.07602 0.90252 0.88444 0.88421 0.95346 0.90005 0.94988 0.89608 0.91517 0.89886 0.94622 0.89648 0.93637 0.89522 0.90900 0.90724 0.90465 0.94254 0.91145 0.92138 0.91720 0.92015 0.95509 0.86863 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.43 10.95 21.83 0.24 -44.19 16 2 C 0.03 1.81 5.14 85.26 0.44 2.24 16 3 Si 0.98 39.37 29.60 68.60 2.03 41.40 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.50 -28.12 9.05 23.46 0.21 -27.91 16 8 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 9 C 0.08 4.42 5.58 -21.29 -0.12 4.30 16 10 C -0.19 -10.25 8.70 22.73 0.20 -10.05 16 11 C -0.09 -4.41 7.83 22.22 0.17 -4.23 16 12 C -0.19 -8.17 4.91 -19.67 -0.10 -8.26 16 13 C 0.13 4.21 5.11 85.56 0.44 4.64 16 14 N -0.54 -16.66 4.65 -900.93 -4.19 -20.84 16 15 C 0.06 1.35 5.46 86.33 0.47 1.82 16 16 C -0.10 -2.11 5.10 30.65 0.16 -1.96 16 17 C 0.09 1.94 1.72 44.99 0.08 2.02 16 18 N -0.53 -10.93 5.11 -857.37 -4.38 -15.31 16 19 C 0.03 0.52 5.33 86.65 0.46 0.98 16 20 C -0.12 -1.56 7.06 31.80 0.22 -1.33 16 21 C -0.13 -1.78 6.93 31.47 0.22 -1.56 16 22 C 0.03 0.59 5.61 86.44 0.49 1.08 16 23 C -0.10 -2.65 5.32 30.65 0.16 -2.48 16 24 C 0.06 1.90 5.15 86.33 0.44 2.34 16 25 C -0.07 -3.25 9.67 22.22 0.21 -3.04 16 26 C -0.24 -12.50 9.80 22.73 0.22 -12.28 16 27 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 28 H 0.10 5.54 6.16 -2.91 -0.02 5.52 16 29 H 0.10 4.16 7.94 -2.91 -0.02 4.14 16 30 H 0.03 0.93 8.06 -2.39 -0.02 0.91 16 31 H 0.08 2.48 7.92 -2.39 -0.02 2.46 16 32 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.09 1.84 8.02 -2.39 -0.02 1.82 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 1.42 7.03 -2.39 -0.02 1.40 16 36 H 0.04 0.81 7.96 -2.39 -0.02 0.79 16 37 H 0.09 1.30 7.71 -2.39 -0.02 1.28 16 38 H 0.05 0.70 8.02 -2.39 -0.02 0.68 16 39 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.04 0.75 7.65 -2.39 -0.02 0.73 16 44 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 46 H 0.06 1.67 7.45 -2.39 -0.02 1.65 16 47 H 0.06 2.31 5.74 -2.39 -0.01 2.29 16 48 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 50 H 0.09 4.56 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -60.42 380.35 -1.03 -61.45 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.89 Total: 31.18 kcal Atomic # 6 Polarization: -58.06 SS G_CDS: 4.38 Total: -53.68 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -8.33 Total: -80.35 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -60.42 -1.03 -61.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342692245.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.980 kcal (2) G-P(sol) polarization free energy of solvation -60.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds