Wall clock time and date at job start Tue Mar 31 2020 11:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86801 * 119.99816 * 2 1 4 4 H 1.48500 * 109.47152 * 274.98232 * 3 2 1 5 5 H 1.48495 * 109.47093 * 34.98383 * 3 2 1 6 6 H 1.48502 * 109.47196 * 154.98494 * 3 2 1 7 7 C 1.39946 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99262 * 160.81562 * 7 2 1 9 9 C 1.41393 * 120.00315 * 340.81145 * 7 2 1 10 10 C 1.40715 * 120.24362 * 154.97682 * 9 7 2 11 11 C 1.37613 * 119.74417 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.24945 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.74891 * 179.69981 * 12 11 10 14 14 N 1.46904 * 109.46892 * 90.00265 * 13 12 11 15 15 C 1.46849 * 110.99933 * 66.04458 * 14 13 12 16 16 C 1.53030 * 109.52468 * 174.15885 * 15 14 13 17 17 C 1.53124 * 109.27668 * 59.18096 * 16 15 14 18 18 C 1.53121 * 109.16141 * 302.34368 * 17 16 15 19 19 H 1.08995 * 109.50504 * 297.71745 * 18 17 16 20 20 N 1.46900 * 109.50211 * 177.63418 * 18 17 16 21 21 C 1.48532 * 110.99835 * 59.02768 * 20 18 17 22 22 C 1.54944 * 103.22264 * 159.71707 * 21 20 18 23 23 C 1.54593 * 102.92405 * 322.58873 * 22 21 20 24 24 C 1.47904 * 110.99667 * 176.42690 * 20 18 17 25 25 C 1.46843 * 111.00192 * 301.83583 * 14 13 12 26 26 C 1.38634 * 120.50059 * 359.97438 * 12 11 10 27 27 C 1.37618 * 120.24887 * 0.02562 * 26 12 11 28 28 H 0.96999 * 120.00427 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.12668 * 0.04443 * 10 9 7 30 30 H 1.08004 * 119.87632 * 180.02562 * 11 10 9 31 31 H 1.09001 * 109.47350 * 210.00283 * 13 12 11 32 32 H 1.09003 * 109.47310 * 330.00395 * 13 12 11 33 33 H 1.09001 * 109.46287 * 294.17985 * 15 14 13 34 34 H 1.09008 * 109.45892 * 54.14347 * 15 14 13 35 35 H 1.09000 * 109.51036 * 179.12218 * 16 15 14 36 36 H 1.09001 * 109.50620 * 299.20235 * 16 15 14 37 37 H 1.08995 * 109.52499 * 62.25107 * 17 16 15 38 38 H 1.08997 * 109.52357 * 182.44139 * 17 16 15 39 39 H 1.08992 * 110.67161 * 278.14998 * 21 20 18 40 40 H 1.08999 * 110.66741 * 41.28657 * 21 20 18 41 41 H 1.09005 * 110.72335 * 204.22620 * 22 21 20 42 42 H 1.08998 * 110.87389 * 81.01572 * 22 21 20 43 43 H 1.09008 * 110.30568 * 263.03889 * 23 22 21 44 44 H 1.08999 * 110.39260 * 140.91981 * 23 22 21 45 45 H 1.08996 * 109.91636 * 333.50575 * 24 20 18 46 46 H 1.08994 * 109.91869 * 94.80149 * 24 20 18 47 47 H 1.09000 * 109.46362 * 305.85818 * 25 14 13 48 48 H 1.09003 * 109.46321 * 65.82356 * 25 14 13 49 49 H 1.07997 * 119.87674 * 179.97438 * 26 12 11 50 50 H 1.07991 * 120.12930 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3844 2.1073 -1.3948 5 1 1.4963 2.6199 0.8027 6 1 3.5885 1.4121 0.5920 7 6 2.0079 -1.2120 -0.0005 8 1 3.0430 -1.2377 -0.3079 9 6 1.3599 -2.4027 0.4014 10 6 1.8161 -3.6498 -0.0641 11 6 1.1774 -4.8021 0.3332 12 6 0.0881 -4.7375 1.1883 13 6 -0.6071 -6.0061 1.6108 14 7 0.0160 -6.5207 2.8376 15 6 -0.2085 -5.6070 3.9651 16 6 0.3255 -6.2411 5.2514 17 6 1.8214 -6.5261 5.0913 18 6 2.0321 -7.4406 3.8814 19 1 1.5294 -8.3924 4.0527 20 7 3.4695 -7.6732 3.6868 21 6 4.0754 -8.2975 4.8907 22 6 5.3782 -8.9326 4.3429 23 6 4.9518 -9.4493 2.9497 24 6 3.7075 -8.6220 2.5774 25 6 1.4486 -6.7717 2.6348 26 6 -0.3700 -3.5144 1.6531 27 6 0.2533 -2.3492 1.2689 28 1 -0.4851 0.8400 0.0004 29 1 2.6645 -3.7023 -0.7304 30 1 1.5261 -5.7605 -0.0224 31 1 -1.6606 -5.7980 1.7981 32 1 -0.5189 -6.7499 0.8189 33 1 0.3119 -4.6672 3.7802 34 1 -1.2765 -5.4159 4.0705 35 1 0.1728 -5.5562 6.0855 36 1 -0.2045 -7.1737 5.4447 37 1 2.3564 -5.5890 4.9371 38 1 2.1968 -7.0174 5.9889 39 1 4.3024 -7.5421 5.6429 40 1 3.4165 -9.0635 5.2997 41 1 5.7019 -9.7574 4.9778 42 1 6.1664 -8.1852 4.2524 43 1 4.7006 -10.5089 2.9998 44 1 5.7475 -9.2837 2.2233 45 1 2.8460 -9.2794 2.4599 46 1 3.8888 -8.0742 1.6528 47 1 1.5842 -7.4266 1.7740 48 1 1.9612 -5.8265 2.4562 49 1 -1.2197 -3.4758 2.3186 50 1 -0.1054 -1.3974 1.6319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342764881.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:19 Heat of formation + Delta-G solvation = 15.459675 kcal Electronic energy + Delta-G solvation = -26947.330647 eV Core-core repulsion = 23551.944544 eV Total energy + Delta-G solvation = -3395.386103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.79215 -38.29728 -36.87911 -34.23765 -33.04701 -31.81528 -29.98428 -29.29135 -28.94138 -28.11848 -26.67526 -24.38170 -22.95090 -22.37185 -21.08569 -20.73865 -20.38307 -19.95983 -19.17197 -17.29762 -16.35174 -15.98307 -15.32707 -15.07433 -14.81562 -14.50616 -14.03417 -13.99274 -13.80678 -13.62567 -13.26866 -13.10537 -12.92880 -12.56393 -12.36559 -12.13480 -11.96099 -11.73622 -11.57773 -11.40303 -11.23180 -11.16182 -11.15098 -10.96748 -10.87308 -10.75069 -10.65122 -10.51130 -10.35062 -10.22769 -9.98107 -9.72292 -9.39820 -9.11172 -8.35856 -7.79848 -7.44705 -7.29381 -6.78249 -4.35222 2.74027 3.05413 3.07072 3.10040 3.18426 3.86585 3.92431 4.45606 4.57994 4.60589 4.71238 4.87578 5.01404 5.12268 5.19975 5.25403 5.39872 5.48261 5.57852 5.65174 5.67816 5.68778 5.71708 5.76752 5.83118 5.91220 5.93739 5.99718 6.04112 6.07298 6.11024 6.21433 6.23907 6.29704 6.35745 6.37634 6.44585 6.46894 6.63778 6.93139 6.94113 7.05801 7.10504 7.25928 7.34673 7.55372 7.56415 7.62988 7.86181 8.04796 8.11922 8.29757 8.63334 8.88900 8.97203 10.16705 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.015121 B = 0.003458 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.244449 B = 8095.107068 C = 8799.723079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.115 3.885 10 C -0.227 4.227 11 C -0.075 4.075 12 C -0.250 4.250 13 C 0.116 3.884 14 N -0.534 5.534 15 C 0.052 3.948 16 C -0.113 4.113 17 C -0.112 4.112 18 C 0.084 3.916 19 H 0.043 0.957 20 N -0.512 5.512 21 C 0.037 3.963 22 C -0.124 4.124 23 C -0.131 4.131 24 C 0.036 3.964 25 C 0.067 3.933 26 C -0.088 4.088 27 C -0.167 4.167 28 H 0.280 0.720 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.044 0.956 46 H 0.080 0.920 47 H 0.063 0.937 48 H 0.059 0.941 49 H 0.083 0.917 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 -13.688 8.874 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.112 3.888 10 C -0.246 4.246 11 C -0.094 4.094 12 C -0.252 4.252 13 C -0.011 4.011 14 N -0.257 5.257 15 C -0.076 4.076 16 C -0.152 4.152 17 C -0.150 4.150 18 C -0.025 4.025 19 H 0.061 0.939 20 N -0.236 5.236 21 C -0.091 4.091 22 C -0.162 4.162 23 C -0.169 4.169 24 C -0.092 4.092 25 C -0.062 4.062 26 C -0.107 4.107 27 C -0.187 4.187 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.062 0.938 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.102 0.898 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.763 -13.482 8.861 16.566 hybrid contribution 0.267 0.852 -0.210 0.917 sum 4.030 -12.630 8.651 15.830 Atomic orbital electron populations 1.69837 1.07621 1.29217 1.34962 1.25899 0.94666 1.01274 0.92184 0.86365 0.80897 0.80829 0.79056 1.19573 1.20016 1.18385 1.19593 0.98647 0.91524 1.39625 0.90503 1.17596 0.90805 0.91954 0.88399 1.20960 1.04221 0.92965 1.06473 1.20343 0.95700 0.96145 0.97219 1.19626 1.02674 0.94318 1.08621 1.20802 0.96836 0.93239 0.90216 1.62409 1.12698 1.45246 1.05338 1.22056 1.00344 0.95014 0.90185 1.21559 0.95351 1.00866 0.97390 1.21617 0.96634 1.00143 0.96564 1.21809 0.86699 0.97816 0.96183 0.93884 1.64730 1.13338 1.41851 1.03727 1.23189 0.94962 0.97199 0.93740 1.22473 0.97689 1.00046 0.95959 1.22402 0.97956 0.99084 0.97479 1.22848 0.96730 0.93626 0.95991 1.21946 0.88370 1.00383 0.95483 1.20500 0.98264 0.92731 0.99193 1.21232 0.99886 0.96623 1.00913 0.90902 0.89236 0.89886 0.91688 0.91862 0.93301 0.91523 0.91727 0.91869 0.91145 0.92523 0.90141 0.94070 0.91409 0.90737 0.91831 0.91078 0.93790 0.90209 0.91886 0.92294 0.89849 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.55 11.08 55.55 0.62 -19.94 16 2 C 0.08 1.97 5.10 -17.34 -0.09 1.88 16 3 Si 0.90 18.76 29.60 -169.99 -5.03 13.72 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.44 9.04 -37.74 -0.34 -12.78 16 8 H 0.08 1.99 7.92 -52.48 -0.42 1.58 16 9 C 0.12 3.08 5.56 -106.83 -0.59 2.48 16 10 C -0.23 -5.60 9.80 -38.87 -0.38 -5.98 16 11 C -0.08 -1.66 7.98 -39.66 -0.32 -1.98 16 12 C -0.25 -5.28 4.06 -104.33 -0.42 -5.70 16 13 C 0.12 2.05 5.55 -4.97 -0.03 2.02 16 14 N -0.53 -8.67 4.86 -236.11 -1.15 -9.81 16 15 C 0.05 0.81 4.82 -3.84 -0.02 0.80 16 16 C -0.11 -1.47 6.09 -26.65 -0.16 -1.63 16 17 C -0.11 -1.48 5.05 -26.60 -0.13 -1.61 16 18 C 0.08 1.16 1.79 -67.63 -0.12 1.04 16 19 H 0.04 0.61 7.98 -51.93 -0.41 0.19 16 20 N -0.51 -6.71 5.11 -222.41 -1.14 -7.84 16 21 C 0.04 0.40 5.38 -1.89 -0.01 0.39 16 22 C -0.12 -1.14 7.06 -24.87 -0.18 -1.32 16 23 C -0.13 -1.25 6.93 -25.38 -0.18 -1.42 16 24 C 0.04 0.43 5.52 -2.75 -0.02 0.41 16 25 C 0.07 1.07 3.75 -3.84 -0.01 1.06 16 26 C -0.09 -2.01 8.09 -39.66 -0.32 -2.33 16 27 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 28 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 29 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 30 H 0.08 1.66 8.01 -52.48 -0.42 1.24 16 31 H 0.06 1.11 8.00 -51.93 -0.42 0.69 16 32 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 33 H 0.05 0.90 6.56 -51.93 -0.34 0.56 16 34 H 0.07 1.00 8.06 -51.92 -0.42 0.58 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.65 7.06 -51.93 -0.37 0.29 16 39 H 0.08 0.85 7.71 -51.93 -0.40 0.45 16 40 H 0.04 0.43 8.01 -51.93 -0.42 0.01 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.04 0.52 7.64 -51.93 -0.40 0.12 16 46 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.06 1.01 7.30 -51.93 -0.38 0.63 16 48 H 0.06 1.15 6.46 -51.93 -0.34 0.81 16 49 H 0.08 1.75 8.03 -52.49 -0.42 1.33 16 50 H 0.11 3.03 6.25 -52.49 -0.33 2.71 16 LS Contribution 376.81 15.07 5.68 5.68 Total: -1.00 -26.88 376.81 -13.51 -40.38 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -8.83 Total: 7.17 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: -3.66 Total: -29.36 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -1.67 Total: -37.60 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -26.88 -13.51 -40.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342764881.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.843 kcal (2) G-P(sol) polarization free energy of solvation -26.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds